mRNA_L-elsbetiae_contig8283.17292.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8283.17292.1
Unique NamemRNA_L-elsbetiae_contig8283.17292.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8283.17292.1 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.500e-7
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = -1 
Query:  583 KTAEFCFEHKRDGMVDVLSRRCAHQGCTKQPVFGIVGTK 699
            K AEFC +HK+  MV+V+S+RC H GCTKQP +G  G+K
Sbjct:   20 KNAEFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
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BLAST of mRNA_L-elsbetiae_contig8283.17292.1 vs. uniprot
Match: D7FR73_ECTSI (EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR73_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 4.980e-5
Identity = 23/40 (57.50%), Postives = 30/40 (75.00%), Query Frame = -1 
Query:  583 KTAEFCFEHKRDGMVDVLSRRCAHQGCT-KQPVFGIVGTK 699
            KTA FC  H R+GM DV+S+RCA QGCT + P FG+ G++
Sbjct:   32 KTAPFCMSHAREGMEDVVSKRCAFQGCTVRNPRFGVPGSR 71
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8283.17292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE3.500e-758.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR73_ECTSI4.980e-557.50EsV-1-7 (Partial) (Fragment) n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8283contigL-elsbetiae_contig8283:6674..7372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size701
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.94016-UTR-L-elsbetiae_contig8283:6673..69311622816911.94016-UTR-L-elsbetiae_contig8283:6673..6931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8283 6674..6931 +
1691683906.7217488-UTR-L-elsbetiae_contig8283:6673..69311691683906.7217488-UTR-L-elsbetiae_contig8283:6673..6931Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8283 6674..6931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.9521863-CDS-L-elsbetiae_contig8283:6931..73721622816911.9521863-CDS-L-elsbetiae_contig8283:6931..7372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8283 6932..7372 +
1691683906.7316167-CDS-L-elsbetiae_contig8283:6931..73721691683906.7316167-CDS-L-elsbetiae_contig8283:6931..7372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8283 6932..7372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8283.17292.1prot_L-elsbetiae_contig8283.17292.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8283 6932..7372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8283.17292.1

>prot_L-elsbetiae_contig8283.17292.1 ID=prot_L-elsbetiae_contig8283.17292.1|Name=mRNA_L-elsbetiae_contig8283.17292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MARLVGASGAVATLVLDIHHPVFLMFRAELPCFRADNTKDRMLGAPLVDA
LPALDIHHPVLLVPRAEFRCFRASNTIAGPLGATVVGAPPTQDIHHPVLL
MFRAELRCFRADNTKDRLLGAPLVGAPPAQDIHHPVPLMFEAELRCF
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mRNA from alignment at L-elsbetiae_contig8283:6674..7372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8283.17292.1 ID=mRNA_L-elsbetiae_contig8283.17292.1|Name=mRNA_L-elsbetiae_contig8283.17292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=699bp|location=Sequence derived from alignment at L-elsbetiae_contig8283:6674..7372+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGCCTGGCGGGCTCTCTTGCTCGAGAAGACCTCCGTCTGCTCGGACG
AGGAAGCACGGCCCTTCCGCTCTTGACCGGCACCAGCACCATGGGCGGTG
CCAATGTCACCTACTGCTACATGGTCACGCTCGCTGCCGCTGCCGCTGCC
GCCCCGTGCTTCACCGCTGATGAACCTGTTATTTGGTGCAGTGAGATGGG
CCATGCTCCCTTCGGCGTGTTGACCACATAGTTTTCTCTTGGTAGCGCCG
ATCATACCATGGCTCGACTGGTTGGTGCAAGTGGCGCCGTTGCAACTCTT
GTGCTTGACATCCACCATCCCGTCTTTCTTATGTTCAGAGCAGAACTCCC
CTGTTTTCGTGCCGACAATACCAAAGACCGGATGCTTGGTGCACCCTTGG
TGGACGCACTTCCTGCTCTTGACATCCACCATCCCGTCCTTCTTGTGCCC
AGAGCAGAATTCCGCTGTTTTCGTGCCAGCAACACCATAGCTGGGCCACT
TGGTGCAACCGTGGTGGGCGCACCTCCTACTCAAGACATTCACCATCCCG
TCCTTCTTATGTTCAGAGCAGAACTCCGCTGTTTTCGTGCCGACAATACC
AAAGACCGGCTGCTTGGTGCACCCTTGGTGGGCGCACCTCCTGCTCAAGA
CATCCACCATCCCGTCCCTCTTATGTTCGAAGCAGAACTCCGCTGTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8283:6674..7372+

>mRNA_L-elsbetiae_contig8283.17292.1 ID=mRNA_L-elsbetiae_contig8283.17292.1|Name=mRNA_L-elsbetiae_contig8283.17292.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig8283:6674..7372+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCGACTGGTTGGTGCAAGTGGCGCCGTTGCAACTCTTGTGCTTGA
CATCCACCATCCCGTCTTTCTTATGTTCAGAGCAGAACTCCCCTGTTTTC
GTGCCGACAATACCAAAGACCGGATGCTTGGTGCACCCTTGGTGGACGCA
CTTCCTGCTCTTGACATCCACCATCCCGTCCTTCTTGTGCCCAGAGCAGA
ATTCCGCTGTTTTCGTGCCAGCAACACCATAGCTGGGCCACTTGGTGCAA
CCGTGGTGGGCGCACCTCCTACTCAAGACATTCACCATCCCGTCCTTCTT
ATGTTCAGAGCAGAACTCCGCTGTTTTCGTGCCGACAATACCAAAGACCG
GCTGCTTGGTGCACCCTTGGTGGGCGCACCTCCTGCTCAAGACATCCACC
ATCCCGTCCCTCTTATGTTCGAAGCAGAACTCCGCTGTTTTATGGCTCGA
CTGGTTGGTGCAAGTGGCGCCGTTGCAACTCTTGTGCTTGACATCCACCA
TCCCGTCTTTCTTATGTTCAGAGCAGAACTCCCCTGTTTTCGTGCCGACA
ATACCAAAGACCGGATGCTTGGTGCACCCTTGGTGGACGCACTTCCTGCT
CTTGACATCCACCATCCCGTCCTTCTTGTGCCCAGAGCAGAATTCCGCTG
TTTTCGTGCCAGCAACACCATAGCTGGGCCACTTGGTGCAACCGTGGTGG
GCGCACCTCCTACTCAAGACATTCACCATCCCGTCCTTCTTATGTTCAGA
GCAGAACTCCGCTGTTTTCGTGCCGACAATACCAAAGACCGGCTGCTTGG
TGCACCCTTGGTGGGCGCACCTCCTGCTCAAGACATCCACCATCCCGTCC
CTCTTATGTTCGAAGCAGAACTCCGCTGTTTT
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