mRNA_L-elsbetiae_contig8283.17291.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8283.17291.1
Unique NamemRNA_L-elsbetiae_contig8283.17291.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8283.17291.1 vs. uniprot
Match: D8LPX1_ECTSI (Alpha/beta hydrolase fold n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPX1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 8.000e-13
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 2 
Query:  188 SKILAGLGGRAREPGIMGRAVTCVPFDAVSCQQRVDIRR*LGKIVYARNGINIVTPKSL 364
            +K L  LG RAR+ GIMG AVTCVPFDAVSCQQRVD     GKIVYA+N +N + PK +
Sbjct:  278 TKFLGELGDRARDMGIMGGAVTCVPFDAVSCQQRVDTG--FGKIVYAKNFLNSLIPKMM 334
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BLAST of mRNA_L-elsbetiae_contig8283.17291.1 vs. uniprot
Match: A0A835ZB94_9STRA (Alpha/beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB94_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.320e-5
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 2 
Query:  188 SKILAGLGGRAREPGIMGRAVTCVPFDAVSCQQRVDIRR*LGKIVYARNGINIVTPK 358
            SK L  +G RA+E GI+G +V+CVPFDAV CQ+++D      + VY+ N +  + PK
Sbjct:  193 SKYLGEIGSRAQELGIIGASVSCVPFDAVGCQEQIDSG--FNRRVYSGNFLKSLKPK 247
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8283.17291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPX1_ECTSI8.000e-1364.41Alpha/beta hydrolase fold n=2 Tax=Ectocarpus TaxID... [more]
A0A835ZB94_9STRA1.320e-545.61Alpha/beta hydrolase protein n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8283contigL-elsbetiae_contig8283:662..5405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size617
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8283.17291.1prot_L-elsbetiae_contig8283.17291.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8283 662..4060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.9868698-CDS-L-elsbetiae_contig8283:661..7591622816911.9868698-CDS-L-elsbetiae_contig8283:661..759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8283 662..759 -
1691683906.741675-CDS-L-elsbetiae_contig8283:661..7591691683906.741675-CDS-L-elsbetiae_contig8283:661..759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8283 662..759 -
1622816911.9983993-CDS-L-elsbetiae_contig8283:3957..40601622816911.9983993-CDS-L-elsbetiae_contig8283:3957..4060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8283 3958..4060 -
1691683906.7533758-CDS-L-elsbetiae_contig8283:3957..40601691683906.7533758-CDS-L-elsbetiae_contig8283:3957..4060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8283 3958..4060 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.0107052-UTR-L-elsbetiae_contig8283:4060..40761622816912.0107052-UTR-L-elsbetiae_contig8283:4060..4076Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8283 4061..4076 -
1691683906.7629032-UTR-L-elsbetiae_contig8283:4060..40761691683906.7629032-UTR-L-elsbetiae_contig8283:4060..4076Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8283 4061..4076 -
1622816912.0253227-UTR-L-elsbetiae_contig8283:4565..46791622816912.0253227-UTR-L-elsbetiae_contig8283:4565..4679Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8283 4566..4679 -
1691683906.774331-UTR-L-elsbetiae_contig8283:4565..46791691683906.774331-UTR-L-elsbetiae_contig8283:4565..4679Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8283 4566..4679 -
1622816912.0380776-UTR-L-elsbetiae_contig8283:5119..54051622816912.0380776-UTR-L-elsbetiae_contig8283:5119..5405Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8283 5120..5405 -
1691683906.792843-UTR-L-elsbetiae_contig8283:5119..54051691683906.792843-UTR-L-elsbetiae_contig8283:5119..5405Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8283 5120..5405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8283.17291.1

>prot_L-elsbetiae_contig8283.17291.1 ID=prot_L-elsbetiae_contig8283.17291.1|Name=mRNA_L-elsbetiae_contig8283.17291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MMIHSFLDDHQDYYPKTQSGQFSRDARVPFLGGAGDRRSFHGPGTAAYVA
HGSEGAPARLLYPTTR*
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mRNA from alignment at L-elsbetiae_contig8283:662..5405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8283.17291.1 ID=mRNA_L-elsbetiae_contig8283.17291.1|Name=mRNA_L-elsbetiae_contig8283.17291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4744bp|location=Sequence derived from alignment at L-elsbetiae_contig8283:662..5405- (Laminarionema elsbetiae ELsaHSoW15)
CGAGGTAAACGCACGACAAGTCGTTTCCATCGATGGGTTCAAGAGGGGAC
CATGGGTAGTTTATTTCTTCTTTCAAGAGCGTGCAGCAAAAACCTTTCTG
AGCTGTCTTACACCTTGGCGTGGCTGGTTGTTGTTCGCTTTTTCGGTTTT
GTGTAGATATGTGTTGTGATCGTTGCTTTGCCCGTTCTCCAAGATCCTGG
CGGGGTTGGGCGGTCGTGCGAGGGAACCAGGAATCATGGGCAGGGCCGTG
ACTTGCGTCCCGTTCGACGCTGTTTCGTGCCAACAGGTGAGGGCTATTCG
CAAGGATGAGTCGTCGTTGTTGCTCGTTGCTGCTGGTGTTGTGGTGATTC
TCATCGATTGCTGTTGGTGTTACTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTTGTTGTTGTCGTGTATAGTATGTCCCAACAACGATTC
GAGAGTCATCCGCTTACGTCTGTCCGCTTGTCTGTCGTGGCCGTGTTCCT
TATTTTTGTTTCTTGCATGTTTGGCATTTTCGGAGAGTTTTGGTCCACGC
CAGGCCTGCCTGATTTTCGAGCCCGTCTTGCGTTTTCTGTATGTTGGTTT
GCGTTTCTGTCTGCTTTCGCTGCAAAACCTCGTCAGCAGTCCGCATCCAA
GCGTTCTGATCATGTTCGTCCTATACTGTTTGCTCCCTCTATCCCCGCCC
CGCGTCCGCAACCCCTCTCGCGCCAGCGAGTAGACATACGTAGGTGACTC
GGCAAAATTGTCTACGCGAGGAATGGTATCAACATCGTGACCCCAAAGTC
GTTGGCCTAGAGAATCTGAAGAACGCCACCACAGCAGTCGGTAAGCATTT
GGGGATGATGAAGCATAATTTTGCACTATCTTATCGATGTTAGTGCATAG
AACATGCTGCAAGTGTGTGGGTACCAACGACGGAAGATAGCATACCCACC
CTAACCCTCAACCTTGAGAGCACCCCCCGCCACCGCCCCCCCATGGTGTC
CAACTGAACGATAGCACGACGGGAGAAGGGAGATGCAGCCGAGTGTTACG
TGTGTAGAAGGCCAACGATCTCGTGTTTTCCACCATGATGTGTCGAGTAT
CGTCATCCTCCCCCTTGATAAATGGACCGGTCAACTCGAGTGCCCAGCAC
CTTGGGCATGGTAACGTTGTGGTTTAATGGTGCGCTTCCCCACGTCTGGA
CTCCAACCGGCCTCTTTCTCTGTCTCTCTGTGTGTGTGTGTCCCTCGTTC
TCTGTCTCGCTGTTTTGCTGCCTTTTTTTCTTGTGGTCTGGCTGTTTTGA
TGTACTGGGAACAAATGAAACGACAACAGGTGAGAGAGTGGCGACATGAT
GATACATAGCTTCCTCGACGACCATCAGGACTACTACCCAAAGACGCAGT
CCGGACAGTTCTCCAGGGACGCACGAGTTCCCTTCTTGGGCGGTGCAGGT
GTGTTCTTCGACGAAGCCGACAGTTTTGAAAGAAAAACAGCAAATCAAAA
AATGGAACCTAACCCACATTGAGACGGGACTCCGTGAGATTGAATCGATG
TTCCACACAGTGACGTGATATTGGGCCCGCCGAGTAGAAAAACACTTGAG
ATATAGGAAGAATTGACCACCTCCCCTGCAAGCCAAGCCTGCCAGGCCAA
ACAACATGTATTTCGGGGAACCACCCTCCGTGATTTCGTGATATTGTCAA
CTACCTCTTTGATAGGACCACCTGGCATTATTTGACTTAATTGCTGCTGT
GAGCAAGTCTACGTGGTTTGTTTGTACGGACCCTTAACCGTGTCCGATCT
GTTTTTGGGTTTTTTGTTGAAACCTTTGGTGTCTTTTTAGTAAAGAAGAG
CATTTTTGTTTTCCCAGCTGGTGCTTGAACCATGCGGCCGAACGGCCGAA
AACAAACCAATCGGCCCAAAAATGGCGGGATGTACTTCGCCCCTTTTCCC
AGCAAAAGTAAAAGACCTATGGTCCGTGCACAATAATTCGTCCAATCACG
TTTCCTGTCGTACCTTTTGCAATAGGGCGATTCAGCCGGAGTTCCAGCCA
TCCTAGTGTTCCTCAGACCAAGCGGAAAAAGATGGGACCGAGAAACAAAA
TGATAGCAGTACTTTAATTCCAAATTGTTTAGGAGGCACACGCCGGAAAA
AAAACAGAGACAGGAATGAAAAGACCAAAAAAGGGGCAAGTTTGTTGAAG
CAGCAGGTACAACAAGGTGTTGTTTATTGATGAAACCGTCGTGTTGTACT
TAGATTGGTCAAGAGGCGTTAACCGGTTGTTTAGGGTACGCGGAGATGTA
TCACGTAGCACGGGACCCCCAGCATGGCAGAGTGTCTCTCCCACTCTATT
CGAAGCCAACTGGTCACCTTGAAAGTTTTAGTGCTCTAGAGAGCGTAGCG
CAGAGGAATGGAGCAAGGTGGACACGTAGAAGGGCTTCCAAAGGAGTTGG
TCAGCTTTAGGAGCGGCCAATAAAGCGAGTATTTTCCCGCCCACCCACCC
CTTCCTTTCGAAGGCGGGGGGAGGAAGAGAAGACCCGACAGTAGCTAGAA
ACGAGTTCTAGTTGGCGTAGGAAATGGTAGGATGTCATTTGGGGACTTGG
TCACCCGAGCCTACTGCTTACAGTAAGACTAGTTCCCTTCACCGGAGGAT
AGAGAATCCTCGGTTGTTGTTACGGAGGGAAGAGGTTAGGTAGTGTTTGA
GCAGAGAGGCAGAGATACGGTCCAGTTCGCGCAGAAGTATATCTGCAGGA
ACATGGCTCTGCTGGTTGGTATTTCCCTCTTCCTTCGGGGGTCTCGGAAA
ACAATTAAAGTCGGCTCGAAAGAAAACAAAACAATGAACGGTATGTTGGA
CAAAAAACAGAATATCTCGACAACTAGATTTCTCCTCGGCATTTAAAACA
AAAATAGGGAAGCGGCCAAAACAAGGTACACCTTGTACTTTTCCGGCCAA
AACGTGGTGTCCTACTTTGGGTTCAAGTGAAAATTCCTGCCAAGCACCTT
CTTTTGGCCGAAAACGTACACGGTACACCTTCGCGTGGCTACTCAACTTC
CAGCTACACCTTGTTTTGCCGCTCGTTCACCCTCTTTTGGCCGGAAACCG
CGGAGTTCTTCGTCGGGGACCAGGGGCCTTAGTGCCCTACTGACCCACGA
GAAAAGTGCCCTTCCTGCTTACATTTTATCATCATGCCGGATGACCCCCT
AAACCAAATGCGCTACTTACCCTACCCCAATAATCCAGCTGGATAGCCCC
GCCGTCACACTACTGTTGTACAAACGACGGTCATTGCAGCCGTGTGTAGT
TGCACGGCGGAGCGTCTACCCCATCGAGCATGTGTATGTAGAAAGTATGT
AGACATCTATTGACGCTGTGCACGGGTTGTGCCCTACTTTGATGGCGGCC
ATGGGACAGCCTCCGAGATTCTATCAGAGGGCTTTAGAAGGTGCGAGGCA
CGTTGATGTTCGGTACCACATATACCTTGTTTTGGCCGTTGCCCCAAAAA
ATTCCCCTCTGGAGGTTGACGAGGAGGATCGTTGGCCGCTCTTTTGTTTT
GAATCGGTTGGTTTGTTTTTCCATATAAAACAAAACAAATTGGCCTTCTT
TACAAGTTACAGTTTTTTTCCGGATTTCTCGACAACTAGATTTCTCCTCC
GAAAAAACCAAGCTACTCCTATGGGGATCGAACTCAGGAATCGAATGCCG
AAATCTTTTTTTCAAATCGGCTGGTGAGGTTTTGCACATACATAAAACAA
TGCAAGATTTCCGTTTTTTTTTCTCTGATCAAAAGTCAAGGGACACCAAA
ATAAAACACTTTGCGCCACGTCATGCGCCTGGAGACGGGGCGTTTGCCGA
TACTTTAGGATTTCGGAACGTGTGTGCAGAGAAAAGTTGTCATCTGTAAC
GGTTAGGCCACTCAGGCACACTGGTAAAAATATTTTCGTCGTGTAATTGT
TGCTGCCGACGCCAAAATGCCCAAAATCGGTCAAACTGGGTTTATATGAA
TGGAAAAGTCCCACATTGGGGCATATTTTGACATTGTTTTAGTTTTGAAA
GACCAACTCGTGGTTCCTTTTTCTTCATCAGCTTCCTCTTTGCTTTGTCT
TTCAGACGTAATCAACTATAGGATAATCATAAACCGCGATAGATCCAAAC
CATCAAACACCCATAACCACGTGGACTCATGGGACAGAAGTATGCAGTAC
ATTCCAGTACAAACACCAGAAAAACAAAATAAAGTCTACCCTATTTCGAA
ATAATGTATGATGTTATCTACTAAAGACTTCTACCATATTTCGGGGCATG
TACGTATCGACATCTTTTGTTTTCTCGCCGCGTTGCCGGAAGGAGTGGTG
AGTGGGCGGGCGGAATTGTAGGCTGGTGTGTGTGCGCATACCGACTGCCG
TGAAGGAGAAGGAGGTAGGCAAACCAATCTCTAGATCGGCAGCGATATCG
ACATTTAACGCCAGAACATATGATCCCATCTCGCCAGCACGATACCCAAA
ACCCTATCTACCCCGCCGCATATGACCCTTCGCTGCCTCGCCTCACTGTC
TGGGTTTCCCTGTATCGCCGCGGCTACACTCGGATCCGACCCGACCCGGA
ACTTAATCTGGTACCATACTGCCCATGCCCCGACGATACCTTGCAGGCGA
TCGACGATCCTTTCATGGACCTGGCACAGCTGCCTACGTTGCACACGGCT
CGGAAGGCGCCCCTGCCAGGCTATTGTATCCTACCACGAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8283:662..5405-

>mRNA_L-elsbetiae_contig8283.17291.1 ID=mRNA_L-elsbetiae_contig8283.17291.1|Name=mRNA_L-elsbetiae_contig8283.17291.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig8283:662..5405- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGATACATAGCTTCCTCGACGACCATCAGGACTACTACCCAAAGAC
GCAGTCCGGACAGTTCTCCAGGGACGCACGAGTTCCCTTCTTGGGCGGTG
CAGATGATGATACATAGCTTCCTCGACGACCATCAGGACTACTACCCAAA
GACGCAGTCCGGACAGTTCTCCAGGGACGCACGAGTTCCCTTCTTGGGCG
GTGCAGGCGATCGACGATCCTTTCATGGACCTGGCACAGCTGCCTACGTT
GCACACGGCTCGGAAGGCGCCCCTGCCAGGCTATTGTATCCTACCACGAG
GTGAGCGATCGACGATCCTTTCATGGACCTGGCACAGCTGCCTACGTTGC
ACACGGCTCGGAAGGCGCCCCTGCCAGGCTATTGTATCCTACCACGAGGT
GA
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