mRNA_L-elsbetiae_contig8279.17282.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8279.17282.1
Unique NamemRNA_L-elsbetiae_contig8279.17282.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8279.17282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8279contigL-elsbetiae_contig8279:630..2221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size548
Cds size483
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8279.17282.1prot_L-elsbetiae_contig8279.17282.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8279 630..2157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.077406-CDS-L-elsbetiae_contig8279:629..7581622816911.077406-CDS-L-elsbetiae_contig8279:629..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8279 630..758 +
1691683906.0791025-CDS-L-elsbetiae_contig8279:629..7581691683906.0791025-CDS-L-elsbetiae_contig8279:629..758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8279 630..758 +
1622816911.0878923-CDS-L-elsbetiae_contig8279:1803..21571622816911.0878923-CDS-L-elsbetiae_contig8279:1803..2157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8279 1804..2157 +
1691683906.0892322-CDS-L-elsbetiae_contig8279:1803..21571691683906.0892322-CDS-L-elsbetiae_contig8279:1803..2157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8279 1804..2157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.0973601-UTR-L-elsbetiae_contig8279:2157..22211622816911.0973601-UTR-L-elsbetiae_contig8279:2157..2221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8279 2158..2221 +
1691683906.0985832-UTR-L-elsbetiae_contig8279:2157..22211691683906.0985832-UTR-L-elsbetiae_contig8279:2157..2221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8279 2158..2221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8279.17282.1

>prot_L-elsbetiae_contig8279.17282.1 ID=prot_L-elsbetiae_contig8279.17282.1|Name=mRNA_L-elsbetiae_contig8279.17282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
PVSPRTAVVSAGQDLSNGWASLAPQRSISRTQPGLSTSTQVSQLQARPSA
SADVSVVVGSAAFSSSSPSSSSSSSSSILSSALGIGVGNGARTSSPRRTQ
TQGQSQVIHTRRLDLAGHAGGSPPPPTSAAAFPPPSAANPSSLGGVGVQS
TAATRTGNGL*
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mRNA from alignment at L-elsbetiae_contig8279:630..2221+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8279.17282.1 ID=mRNA_L-elsbetiae_contig8279.17282.1|Name=mRNA_L-elsbetiae_contig8279.17282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1592bp|location=Sequence derived from alignment at L-elsbetiae_contig8279:630..2221+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGTGAGCCCTCGAACAGCAGTCGTGTCCGCTGGCCAAGACTTGTCCAA
CGGTTGGGCATCACTGGCACCCCAACGCTCGATCTCGCGGACGCAACCAG
GGCTCAGCACTTCCACTCAGGTGTCGCAGGTGTGTATGTACCGTAGGTGA
CATGACACAAGATACCGCACCCCCTGGACCGACGTTTAGAGCTCCATTAC
TCGGTAACGAACAGAGTGCCAACAACAAACAACACGTTTTCGGACAGCCC
TCGACTAGATCTCTCCAACGGCCACCTCGTTTCGGGACTGGCACTCCTCT
TGCTGGGGAGGAATCGAGCTTTGAAAATCTGCCCAGGGGGTATGGTATCG
TGTGTCACCTACATACGGTATGCATGTAATTTTACGTCGTCGGGGGAAAT
GTCTCAGGAATTTGATGTTTTCTCCGTCCTCAGAAATCAGAGCTAAGATA
CGGCAGTTTAGATGCAGATGTGAGAAGCAGGTGCCAACAGGCGGGCATTG
GTGAAATGCGCGCCCGATTGAGAGGTTAGGTCACAAATGCTGACAAGTAC
GTGTGTAGTAGGAGTCTACCTGGCGTCCAACAGCAGTCAGTGCCGTAGGT
TACATGACACAAGATACCACACCCCCTGGACCAAACTTTAGATCTTCATT
ACTCTGTAACGAAGACGGCGCCAGCACCAAACGACAGGTTTTCGAACAGC
CCTCGACTACAATAGATCTTTCCAACGCCACCCCTTCCGGCACTGGCACC
CTCTTTGTCAAGGAGTAATGCAGCTCTAAAATTCGGTCCGGGGTGTGTGG
TATCTTGTGTCACCTACGGTAGTTCTGCTTGGAAGACGGAAGGCGTAGAT
GTGTTACATGTATATGTAGCAGGGGTACACAGCTGCGTCCTGGCTCACCA
ATGTTCAGGCTTGCGGCAAAACTCACCCTCAATCTGTGCTGCGGCTTCCT
TTTATGCCAGCCCTGCTTAAACCCAACCCTCGGCGTGTTTATTCCTCTGC
AGTATTCATCCCCAAGACGGAACTTGAAGGGAATTAATCTAGCACCTCGC
ACCCTGAAACCTGACACCGGCGTACCTTCACGGTTCCTTCCGTTTTTTTT
TTTTACTTTTTTTTTTTGCGTCTTCGTGTGTACGGCCTCCTGTTCCTGGT
CGCGCGCTTGCTTCTCCGCTCCAGCTGCAAGCCCGGCCGTCCGCTTCTGC
TGACGTCAGTGTCGTGGTAGGCAGCGCAGCATTCTCGTCGTCGTCACCGT
CGTCGTCGTCGTCATCATCGTCGTCTATTCTGTCGTCGGCCCTAGGCATT
GGTGTTGGTAATGGGGCCCGGACGTCGTCTCCGCGGCGAACCCAGACCCA
AGGCCAAAGCCAAGTCATCCATACTCGGCGGCTGGATCTAGCCGGTCACG
CCGGGGGCTCTCCTCCTCCTCCTACTTCGGCGGCGGCCTTCCCGCCTCCT
TCTGCTGCAAACCCCTCGTCTTTGGGGGGCGTTGGCGTTCAGTCGACGGC
AGCGACTCGGACCGGGAATGGCCTGTAACGACCTCGTGGTATTGATGGAA
ATAGAGATGTACGTACCACGATGTATAGATGGACTCGACTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8279:630..2221+

>mRNA_L-elsbetiae_contig8279.17282.1 ID=mRNA_L-elsbetiae_contig8279.17282.1|Name=mRNA_L-elsbetiae_contig8279.17282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig8279:630..2221+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGTGAGCCCTCGAACAGCAGTCGTGTCCGCTGGCCAAGACTTGTCCAA
CGGTTGGGCATCACTGGCACCCCAACGCTCGATCTCGCGGACGCAACCAG
GGCTCAGCACTTCCACTCAGGTGTCGCAGCCCGTGAGCCCTCGAACAGCA
GTCGTGTCCGCTGGCCAAGACTTGTCCAACGGTTGGGCATCACTGGCACC
CCAACGCTCGATCTCGCGGACGCAACCAGGGCTCAGCACTTCCACTCAGG
TGTCGCAGCTGCAAGCCCGGCCGTCCGCTTCTGCTGACGTCAGTGTCGTG
GTAGGCAGCGCAGCATTCTCGTCGTCGTCACCGTCGTCGTCGTCGTCATC
ATCGTCGTCTATTCTGTCGTCGGCCCTAGGCATTGGTGTTGGTAATGGGG
CCCGGACGTCGTCTCCGCGGCGAACCCAGACCCAAGGCCAAAGCCAAGTC
ATCCATACTCGGCGGCTGGATCTAGCCGGTCACGCCGGGGGCTCTCCTCC
TCCTCCTACTTCGGCGGCGGCCTTCCCGCCTCCTTCTGCTGCAAACCCCT
CGTCTTTGGGGGGCGTTGGCGTTCAGTCGACGGCAGCGACTCGGACCGGG
AATGGCCTGTAACTGCAAGCCCGGCCGTCCGCTTCTGCTGACGTCAGTGT
CGTGGTAGGCAGCGCAGCATTCTCGTCGTCGTCACCGTCGTCGTCGTCGT
CATCATCGTCGTCTATTCTGTCGTCGGCCCTAGGCATTGGTGTTGGTAAT
GGGGCCCGGACGTCGTCTCCGCGGCGAACCCAGACCCAAGGCCAAAGCCA
AGTCATCCATACTCGGCGGCTGGATCTAGCCGGTCACGCCGGGGGCTCTC
CTCCTCCTCCTACTTCGGCGGCGGCCTTCCCGCCTCCTTCTGCTGCAAAC
CCCTCGTCTTTGGGGGGCGTTGGCGTTCAGTCGACGGCAGCGACTCGGAC
CGGGAATGGCCTGTAA
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