mRNA_L-elsbetiae_contig8276.17278.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8276.17278.1
Unique NamemRNA_L-elsbetiae_contig8276.17278.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8276.17278.1 vs. uniprot
Match: D7FZ85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ85_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 9.220e-30
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 2 
Query:    2 MPMTVQTPRIAIRDTTIDGLLDKPAKANKTVFILQIREAAAKTKDPLFTFGAGVDERQCAFKFAFQKLMNDLQ 220
            MPMTV TPRIAI+D+T+ GLL KPAKA  T+FIL IR+AAA+TKD LFTFGAGVD+RQCAF+FAFQKLM DLQ
Sbjct:  234 MPMTVATPRIAIKDSTLGGLLKKPAKAKWTMFILNIRQAAAETKDSLFTFGAGVDKRQCAFRFAFQKLMADLQ 306
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BLAST of mRNA_L-elsbetiae_contig8276.17278.1 vs. uniprot
Match: UPI001CFC7680 (hypothetical protein n=1 Tax=Microseira wollei TaxID=467598 RepID=UPI001CFC7680)

HSP 1 Score: 81.3 bits (199), Expect = 2.730e-18
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:    5 PMTVQTPRIAIRDTTIDGLLDKPAKANKTVFILQIREAAAKTKDPLFTFGAGVDERQCAFKFAFQKLMNDLQ 220
            P+T Q PRIAI+ +T DG+L  P    KTV ++QI +AAAKT D  FTFGAG  ER C FK  F   M DLQ
Sbjct:   28 PLTPQAPRIAIKSSTFDGMLSSPTTPGKTVVLMQIGKAAAKTHDIFFTFGAGSSERACVFKDFFLAFMKDLQ 99
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BLAST of mRNA_L-elsbetiae_contig8276.17278.1 vs. uniprot
Match: A0A351L9G3_9CYAN (Uncharacterized protein n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A351L9G3_9CYAN)

HSP 1 Score: 81.3 bits (199), Expect = 1.170e-16
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 2 
Query:    5 PMTVQTPRIAIRDTTIDGLLDKPAKANKTVFILQIREAAAKTKDPLFTFGAGVDERQCAFKFAFQKLMNDLQ 220
            P+T Q PRIAI+ +T DG+L  P    KTV ++QI +AAAKT D  FTFGAG  ER C FK  F   M DLQ
Sbjct:  222 PLTPQAPRIAIKSSTFDGMLSSPTTPGKTVVLMQIGKAAAKTHDIFFTFGAGSSERACVFKDFFLAFMKDLQ 293
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BLAST of mRNA_L-elsbetiae_contig8276.17278.1 vs. uniprot
Match: A0A352AP33_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium UBA9273 TaxID=2055791 RepID=A0A352AP33_9CYAN)

HSP 1 Score: 73.9 bits (180), Expect = 6.310e-14
Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:   11 TVQTPRIAIRDTTIDGLLDKPAKANKTVFILQIREAAAKTKDPLFTFGAGVDERQCAFKFAFQKLMNDLQ 220
            T Q PRIA++++T DGLL  P    KTV IL++ +AA KT +  FTFG G  ER C FK  F   M DLQ
Sbjct:  224 TPQVPRIAVQESTFDGLLSSPITPGKTVIILEVGKAATKTHNLYFTFGTGTPERACVFKDFFVNFMQDLQ 293
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BLAST of mRNA_L-elsbetiae_contig8276.17278.1 vs. uniprot
Match: UPI00024846BC (hypothetical protein n=1 Tax=Acaryochloris sp. CCMEE 5410 TaxID=310037 RepID=UPI00024846BC)

HSP 1 Score: 73.9 bits (180), Expect = 6.310e-14
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 2 
Query:    5 PMTVQTPRIAIRDTTIDGLLDKPAKANKTVFILQIREAAAKTKDPLFTFGAGVDERQCAFKFAFQKLMNDLQV 223
            P+T+Q PRIAIRD+ + GLL    K   TV I QI +AA KT D  FTFG G  ER C+F   F   M DLQ+
Sbjct:  223 PITLQAPRIAIRDSDLGGLLKSKTKPGWTVVIFQIAKAAQKTSDLYFTFGTGTSERACSFMNFFLDFMKDLQM 295
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BLAST of mRNA_L-elsbetiae_contig8276.17278.1 vs. uniprot
Match: A0A1D2P8J3_9CYAN (Uncharacterized protein n=1 Tax=Scytonema millei VB511283 TaxID=1245923 RepID=A0A1D2P8J3_9CYAN)

HSP 1 Score: 69.7 bits (169), Expect = 2.230e-12
Identity = 36/70 (51.43%), Postives = 42/70 (60.00%), Query Frame = 2 
Query:   11 TVQTPRIAIRDTTIDGLLDKPAKANKTVFILQIREAAAKTKDPLFTFGAGVDERQCAFKFAFQKLMNDLQ 220
            T Q PRIA++ +  DGLL  P    KTV IL++ +AAAKT D  FTFG G   R C FK  F   M DLQ
Sbjct:  224 TPQVPRIAVKASNFDGLLSSPITPGKTVVILKVGKAAAKTHDLYFTFGTGSTNRVCIFKDFFLAFMKDLQ 293
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BLAST of mRNA_L-elsbetiae_contig8276.17278.1 vs. uniprot
Match: A0A0P4UME5_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. NIES-2104 TaxID=1552121 RepID=A0A0P4UME5_9CYAN)

HSP 1 Score: 65.5 bits (158), Expect = 7.840e-11
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 2 
Query:    5 PMTVQTPRIAIRDTTIDGLLDKPAKANKTVFILQIREAAAKTKDPLFTFGAGVDERQCAFKFAFQKLMNDLQ 220
            P T Q  RIA++ +T+ G+L  P    KTV    + +AA +T+D LFTFG G  ER C FK  F   M DLQ
Sbjct:  221 PPTPQVSRIAVKASTLGGILAAPTTPGKTVVAFNVGKAATQTQDILFTFGTGRSERSCVFKDFFLGFMTDLQ 292
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8276.17278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FZ85_ECTSI9.220e-3078.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI001CFC76802.730e-1855.56hypothetical protein n=1 Tax=Microseira wollei Tax... [more]
A0A351L9G3_9CYAN1.170e-1655.56Uncharacterized protein n=2 Tax=unclassified Cyano... [more]
A0A352AP33_9CYAN6.310e-1451.43Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
UPI00024846BC6.310e-1452.05hypothetical protein n=1 Tax=Acaryochloris sp. CCM... [more]
A0A1D2P8J3_9CYAN2.230e-1251.43Uncharacterized protein n=1 Tax=Scytonema millei V... [more]
A0A0P4UME5_9CYAN7.840e-1145.83Uncharacterized protein n=1 Tax=Leptolyngbya sp. N... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8276contigL-elsbetiae_contig8276:6852..8719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size233
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.841299-CDS-L-elsbetiae_contig8276:6851..69941622816910.841299-CDS-L-elsbetiae_contig8276:6851..6994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8276 6852..6994 -
1691683905.9317634-CDS-L-elsbetiae_contig8276:6851..69941691683905.9317634-CDS-L-elsbetiae_contig8276:6851..6994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8276 6852..6994 -
1622816910.85276-CDS-L-elsbetiae_contig8276:8631..87191622816910.85276-CDS-L-elsbetiae_contig8276:8631..8719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8276 8632..8719 -
1691683905.9425635-CDS-L-elsbetiae_contig8276:8631..87191691683905.9425635-CDS-L-elsbetiae_contig8276:8631..8719Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8276 8632..8719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8276.17278.1prot_L-elsbetiae_contig8276.17278.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8276 6852..8719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8276.17278.1

>prot_L-elsbetiae_contig8276.17278.1 ID=prot_L-elsbetiae_contig8276.17278.1|Name=mRNA_L-elsbetiae_contig8276.17278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
HADDRPDAPYRYSRHHYRRPPRQACQGQQDRVYPADQGGRGEDEGSPLHL
RRGRRRAAVRLQVRLPEAHERPAGRY*
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mRNA from alignment at L-elsbetiae_contig8276:6852..8719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8276.17278.1 ID=mRNA_L-elsbetiae_contig8276.17278.1|Name=mRNA_L-elsbetiae_contig8276.17278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1868bp|location=Sequence derived from alignment at L-elsbetiae_contig8276:6852..8719- (Laminarionema elsbetiae ELsaHSoW15)
CATGCCGATGACCGTCCAGACGCCCCGTATCGCTATTCGCGACACCACTA
TCGACGGCCTCCTCGACAAGCCTGCCAAGGCCAACAAGGTGAGCCAGTTT
ACCGTACCGTACCCGTACCGTACCCGTACCGTACCCGTACCGTACCCGTA
CTGAACCCGTACCGTATCCGTACCCGTACCGTACCATGTTATGCTCGACA
AGCCGGCCAAGGCACACCGGGTGAGCTAAGATTCCATGCCGCACCGTGTA
TACCATGCTCGGCGAGAAGACCAAGGCGGCTAAAACCCACGTAGACCAGT
ATACCGTACCATACAACCCGTGCCGTACACATACATACTGCTACACCATG
TGGTTGCTCGGCAAGCCAAGTCCGACCAAGGCTGACCAGATCAGCCAATG
TGGCCGTCATTTACCTCACCGTACCGTACCATACGGTGGTCGATGCGGCG
AGTCGACAAGTCGGCCGAAGCCATCATCCTACCGACCACCCAGCAGATCG
ATACATCGAAACACAGCGTAAAATTGCCGCGGTGTACTCTACGGACGAAG
ACTGCGTGTTGGTTCCACGCATTGAACTTGAAGTTGAAGGCAAGCACCGC
AGAAGAGGGGGGGGGGGGGGGGGGGGGGGGGGGCGGTAGCCTCAGGGAGA
GGAACCCTTTTGTGTGACCACGGTTCAGAGCTCTTGTGTGACCACGGTTC
AGAGCTCAGGCATCAAGATGCGCCCTCGCGGGGCTAGGAGCCCTAGACAG
TAGAGCTATCGCCGATGTACAATGCAGGGTAGAATCAGGCCTCGAGGTGA
TCACCAGCGAGAACGGATATACCCAGGAGATCCACGCGAAGCCACTTGCC
CCGCGTTGGCACGCCTACAAGATGTCTGTCTCGTCCTTTTGATGCGGCCG
TCGCGCAGAGAGCAAGCCACTCCTTCCTGCGGAAACATATTATAGCACAC
GAACTAAAAAAATCGAGCGCCAGAAATGGCTAAGAGCCCTTCGAGCGCCA
GAAATGAAAATGCGATGAACAAGAACCGAAAAATGTTCTACAAAGAGCCA
GCAAGCGATCTACATACATACGTCCCCCGTCCCGCCTGTGAAAAAAGTCG
CTCCAGGCGGGTTGCTTGTTGTACAGAGTCCCGTTGACAGTCCCGTTGGC
AGTCCCGTTGGCAGTCCCGTTGACAGTCCCGTTGACAGTCCCGTTGACAG
TCCTGGTGACAGTCCCGTTGACAGTCCCGTTGGCAGTCCCGTTGGCAGTC
CCGTTGACAGTCCCGGTGACAGTCCCGTTGACAGTCCCGGTGACAGTCCC
GTTGACAGTCCTGTTGATAGTCTCCATACGTCCCGTCCCGCCCGTGAAAA
AAGTCGGCCCAGAAGGGCTGACTGCTGCAGGCACGGCATGCTAACCCCCG
CCCCAAGTTACCTGCACGAAATCCGTAACCCTTTTAATGCCGGTTGGTGG
AAAGTTATCTCAGAGGTTCTGTTTATTCGGACACACTCACTTACCTTCTT
GCACCGTCGTTCGGGCGTAACGTCCGTAAACCGTATAGAAGTATCTATTC
TTTGTTTGCAAAAGAGCGTGATGACCGGCTTTTCTGAAAAAACACAGTAC
GTTTTCAGAGCAAAGAAGTCAATCAAAAGTGCATTATTATTACGTAGAAC
GATTCATTGTGGTCTTCACTTTTCGCTTTTTCGCTCCTTCATTTCCGCCC
CCCCCGCTCCGCCCGCTCCTCCCAGACCGTGTTTATCCTGCAGATCAGGG
AGGCCGCGGCGAAGACGAAGGATCCCCTCTTCACCTTCGGCGCGGGCGTC
GACGAGCGGCAGTGCGCCTTCAAGTTCGCCTTCCAGAAGCTCATGAACGA
CCTGCAGGTAGGTACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8276:6852..8719-

>mRNA_L-elsbetiae_contig8276.17278.1 ID=mRNA_L-elsbetiae_contig8276.17278.1|Name=mRNA_L-elsbetiae_contig8276.17278.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig8276:6852..8719- (Laminarionema elsbetiae ELsaHSoW15)
CATGCCGATGACCGTCCAGACGCCCCGTATCGCTATTCGCGACACCACTA
TCGACGGCCTCCTCGACAAGCCTGCCAAGGCCAACAAGCATGCCGATGAC
CGTCCAGACGCCCCGTATCGCTATTCGCGACACCACTATCGACGGCCTCC
TCGACAAGCCTGCCAAGGCCAACAAGACCGTGTTTATCCTGCAGATCAGG
GAGGCCGCGGCGAAGACGAAGGATCCCCTCTTCACCTTCGGCGCGGGCGT
CGACGAGCGGCAGTGCGCCTTCAAGTTCGCCTTCCAGAAGCTCATGAACG
ACCTGCAGGTAGGTACTGAACCGTGTTTATCCTGCAGATCAGGGAGGCCG
CGGCGAAGACGAAGGATCCCCTCTTCACCTTCGGCGCGGGCGTCGACGAG
CGGCAGTGCGCCTTCAAGTTCGCCTTCCAGAAGCTCATGAACGACCTGCA
GGTAGGTACTGA
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