mRNA_L-elsbetiae_contig8274.17277.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8274.17277.1
Unique NamemRNA_L-elsbetiae_contig8274.17277.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8274.17277.1 vs. uniprot
Match: A0A6H5J8B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8B2_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.740e-7
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = -2 
Query:  453 IPGYGATIKRPMDLQSMYYKVQYGAFGGLRLDAVADSAPAVV 578
            +P YGA IKRPMDLQSMYYKVQ+G+FGGL   AV ++ P +V
Sbjct:  272 LPLYGALIKRPMDLQSMYYKVQFGSFGGLHPSAVPNTDPPLV 313
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8274.17277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J8B2_9PHAE3.740e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8274contigL-elsbetiae_contig8274:7017..7595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8274.17277.1prot_L-elsbetiae_contig8274.17277.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8274 7065..7541 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.7871277-UTR-L-elsbetiae_contig8274:7016..70641622816910.7871277-UTR-L-elsbetiae_contig8274:7016..7064Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8274 7017..7064 +
1691683905.897051-UTR-L-elsbetiae_contig8274:7016..70641691683905.897051-UTR-L-elsbetiae_contig8274:7016..7064Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8274 7017..7064 +
1622816910.8087878-UTR-L-elsbetiae_contig8274:7541..75951622816910.8087878-UTR-L-elsbetiae_contig8274:7541..7595Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8274 7542..7595 +
1691683905.9182165-UTR-L-elsbetiae_contig8274:7541..75951691683905.9182165-UTR-L-elsbetiae_contig8274:7541..7595Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8274 7542..7595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.7988932-CDS-L-elsbetiae_contig8274:7064..75411622816910.7988932-CDS-L-elsbetiae_contig8274:7064..7541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8274 7065..7541 +
1691683905.9060137-CDS-L-elsbetiae_contig8274:7064..75411691683905.9060137-CDS-L-elsbetiae_contig8274:7064..7541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8274 7065..7541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8274.17277.1

>prot_L-elsbetiae_contig8274.17277.1 ID=prot_L-elsbetiae_contig8274.17277.1|Name=mRNA_L-elsbetiae_contig8274.17277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MSPGSPASLPAPAEGYNSWGSPFAPPISCGALSPLLPPCALNAAAAAAAA
AAETGINIRSQPPPPPPPPPPPSTATASLLKNPSITAESSSSPASSASPN
GAVTAPLGKGTPKPGLALVMALGSTRTPASLPVPATTAGAESATASRRSP
PNAPYCTL*
back to top

mRNA from alignment at L-elsbetiae_contig8274:7017..7595+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8274.17277.1 ID=mRNA_L-elsbetiae_contig8274.17277.1|Name=mRNA_L-elsbetiae_contig8274.17277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=579bp|location=Sequence derived from alignment at L-elsbetiae_contig8274:7017..7595+ (Laminarionema elsbetiae ELsaHSoW15)
TGGGTATCTAAACTTCCGTTCGCGACATCACGGGGCGCGCCCGGGCTGAT
GAGCCCGGGCAGCCCTGCCTCGCTCCCTGCTCCCGCTGAGGGATACAACA
GCTGGGGATCGCCGTTCGCTCCGCCGATTTCATGTGGCGCCCTCTCCCCG
TTGCTTCCACCGTGCGCGTTGAACGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCGGAAACGGGGATCAACATCCGGTCGCAGCCGCCGCCACCGCCGCCGC
CGCCGCCGCCACCGTCGACCGCAACGGCTTCACTGTTAAAGAACCCATCG
ATCACGGCGGAGTCGTCGTCGTCACCGGCATCCAGCGCCTCTCCCAACGG
CGCCGTGACGGCGCCGTTGGGCAAGGGCACACCGAAGCCCGGGCTCGCGC
TCGTGATGGCACTCGGGTCCACAAGAACGCCGGCTTCGCTGCCCGTGCCG
GCTACTACAGCCGGGGCGGAGTCGGCGACGGCGTCAAGGCGAAGCCCCCC
GAACGCTCCGTACTGCACCTTGTAGTACATCGATTGCAGGTCCATCGGCC
GCTTGATCGTAGCCCCGTAGCCCGGGATC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8274:7017..7595+

>mRNA_L-elsbetiae_contig8274.17277.1 ID=mRNA_L-elsbetiae_contig8274.17277.1|Name=mRNA_L-elsbetiae_contig8274.17277.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig8274:7017..7595+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCCGGGCAGCCCTGCCTCGCTCCCTGCTCCCGCTGAGGGATACAA
CAGCTGGGGATCGCCGTTCGCTCCGCCGATTTCATGTGGCGCCCTCTCCC
CGTTGCTTCCACCGTGCGCGTTGAACGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCGGAAACGGGGATCAACATCCGGTCGCAGCCGCCGCCACCGCCGCC
GCCGCCGCCGCCACCGTCGACCGCAACGGCTTCACTGTTAAAGAACCCAT
CGATCACGGCGGAGTCGTCGTCGTCACCGGCATCCAGCGCCTCTCCCAAC
GGCGCCGTGACGGCGCCGTTGGGCAAGGGCACACCGAAGCCCGGGCTCGC
GCTCGTGATGGCACTCGGGTCCACAAGAACGCCGGCTTCGCTGCCCGTGC
CGGCTACTACAGCCGGGGCGGAGTCGGCGACGGCGTCAAGGCGAAGCCCC
CCGAACGCTCCGTACTGCACCTTGTAGATGAGCCCGGGCAGCCCTGCCTC
GCTCCCTGCTCCCGCTGAGGGATACAACAGCTGGGGATCGCCGTTCGCTC
CGCCGATTTCATGTGGCGCCCTCTCCCCGTTGCTTCCACCGTGCGCGTTG
AACGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGAAACGGGGATCAACAT
CCGGTCGCAGCCGCCGCCACCGCCGCCGCCGCCGCCGCCACCGTCGACCG
CAACGGCTTCACTGTTAAAGAACCCATCGATCACGGCGGAGTCGTCGTCG
TCACCGGCATCCAGCGCCTCTCCCAACGGCGCCGTGACGGCGCCGTTGGG
CAAGGGCACACCGAAGCCCGGGCTCGCGCTCGTGATGGCACTCGGGTCCA
CAAGAACGCCGGCTTCGCTGCCCGTGCCGGCTACTACAGCCGGGGCGGAG
TCGGCGACGGCGTCAAGGCGAAGCCCCCCGAACGCTCCGTACTGCACCTT
GTAG
back to top