mRNA_L-elsbetiae_contig827.17274.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig827.17274.1
Unique NamemRNA_L-elsbetiae_contig827.17274.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig827.17274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig827contigL-elsbetiae_contig827:26086..26894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size809
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.1721137-UTR-L-elsbetiae_contig827:26085..264621622816910.1721137-UTR-L-elsbetiae_contig827:26085..26462Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig827 26086..26462 +
1691683905.3986905-UTR-L-elsbetiae_contig827:26085..264621691683905.3986905-UTR-L-elsbetiae_contig827:26085..26462Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig827 26086..26462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.1822712-CDS-L-elsbetiae_contig827:26462..268941622816910.1822712-CDS-L-elsbetiae_contig827:26462..26894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig827 26463..26894 +
1691683905.417944-CDS-L-elsbetiae_contig827:26462..268941691683905.417944-CDS-L-elsbetiae_contig827:26462..26894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig827 26463..26894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig827.17274.1prot_L-elsbetiae_contig827.17274.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig827 26463..26894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig827.17274.1

>prot_L-elsbetiae_contig827.17274.1 ID=prot_L-elsbetiae_contig827.17274.1|Name=mRNA_L-elsbetiae_contig827.17274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MSPERVTKPRQQRESFSLGALFVRFNILSLHSAARGVHAVVGRVAFLSLA
PDSMVLRPIPMVQEKWAGNGFMPDSRRNPFGGQKIPVGNGATARKHTAPP
IACPLADGSRSGLQNTSSMSMSITYVKQSFFWWPVGQMRMTNNI
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mRNA from alignment at L-elsbetiae_contig827:26086..26894+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig827.17274.1 ID=mRNA_L-elsbetiae_contig827.17274.1|Name=mRNA_L-elsbetiae_contig827.17274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=809bp|location=Sequence derived from alignment at L-elsbetiae_contig827:26086..26894+ (Laminarionema elsbetiae ELsaHSoW15)
TGCTTCGAGGACAGGCAGCGGGGCTTCTCTGTGTAGCCCTCCAAAATGCA
TACTGGTGCCGGGTGTCGTTCTGCAAGATTAGCGTGCTTTCCCCGACCAT
GTCTTCGTTTCTCAAGCCTCCTTTCTTTAAAAAGGGGTGGGTGCAGGAGC
ACCTTTCCTTCGGTGTTGCGTGACGGTGGGCCCGCCGTGTTTTTGTTTCG
TAGTCCCCAAGCTGGGTACTAGCCTGTCTGAACTTGGGTTTACTCAAGCA
GTACATAGACCTGGCCGGGATCAGCAACACGGGCGCTTGTAGTAATCCGG
ACGGTCGAATCGGCAATCGCGGCTAGGGAAACCCCCGTTTTATCCGTGCT
GCTGCCGCTGCTGAGCATGCGTCTCGAATGTCTCCGGAGCGGGTGACGAA
GCCGAGGCAACAACGAGAGAGCTTTTCATTGGGCGCACTCTTTGTGCGTT
TCAATATCTTGTCGCTTCATTCGGCGGCCCGCGGGGTGCATGCGGTGGTC
GGCCGTGTTGCTTTTCTCTCGCTCGCACCAGACAGTATGGTTCTGAGGCC
GATTCCTATGGTTCAGGAAAAGTGGGCAGGAAATGGTTTTATGCCTGATT
CGCGGAGAAACCCCTTCGGAGGGCAGAAAATTCCGGTGGGAAATGGTGCA
ACGGCCCGAAAACACACGGCACCACCGATTGCTTGCCCTCTTGCTGACGG
ATCACGCTCTGGCCTTCAGAATACAAGCTCCATGTCGATGAGCATCACAT
ATGTCAAGCAGAGTTTCTTTTGGTGGCCTGTGGGGCAAATGCGAATGACC
AACAACATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig827:26086..26894+

>mRNA_L-elsbetiae_contig827.17274.1 ID=mRNA_L-elsbetiae_contig827.17274.1|Name=mRNA_L-elsbetiae_contig827.17274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig827:26086..26894+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCCGGAGCGGGTGACGAAGCCGAGGCAACAACGAGAGAGCTTTTC
ATTGGGCGCACTCTTTGTGCGTTTCAATATCTTGTCGCTTCATTCGGCGG
CCCGCGGGGTGCATGCGGTGGTCGGCCGTGTTGCTTTTCTCTCGCTCGCA
CCAGACAGTATGGTTCTGAGGCCGATTCCTATGGTTCAGGAAAAGTGGGC
AGGAAATGGTTTTATGCCTGATTCGCGGAGAAACCCCTTCGGAGGGCAGA
AAATTCCGGTGGGAAATGGTGCAACGGCCCGAAAACACACGGCACCACCG
ATTGCTTGCCCTCTTGCTGACGGATCACGCTCTGGCCTTCAGAATACAAG
CTCCATGTCGATGAGCATCACATATGTCAAGCAGAGTTTCTTTTGGTGGC
CTGTGGGGCAAATGCGAATGACCAACAACATTATGTCTCCGGAGCGGGTG
ACGAAGCCGAGGCAACAACGAGAGAGCTTTTCATTGGGCGCACTCTTTGT
GCGTTTCAATATCTTGTCGCTTCATTCGGCGGCCCGCGGGGTGCATGCGG
TGGTCGGCCGTGTTGCTTTTCTCTCGCTCGCACCAGACAGTATGGTTCTG
AGGCCGATTCCTATGGTTCAGGAAAAGTGGGCAGGAAATGGTTTTATGCC
TGATTCGCGGAGAAACCCCTTCGGAGGGCAGAAAATTCCGGTGGGAAATG
GTGCAACGGCCCGAAAACACACGGCACCACCGATTGCTTGCCCTCTTGCT
GACGGATCACGCTCTGGCCTTCAGAATACAAGCTCCATGTCGATGAGCAT
CACATATGTCAAGCAGAGTTTCTTTTGGTGGCCTGTGGGGCAAATGCGAA
TGACCAACAACATT
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