mRNA_L-elsbetiae_contig827.17273.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig827.17273.1
Unique NamemRNA_L-elsbetiae_contig827.17273.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig827.17273.1 vs. uniprot
Match: D8LF69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF69_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 5.850e-24
Identity = 78/83 (93.98%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 MLRFAVSKVAAVALRPAVCAAAPRAXXXXXXXXXXXXXXXXXXXXX--VVKVVLADSLEWALSSPPPIHQFDEPPIVVEIAEA 243
            MLRFAVSKVA VALRPAV AAAPRA XXXXXXXXXXXXXXXXXXXX  VVKVVLADSLEWALSSPPPIHQFDEPPIVVEIAEA
Sbjct:    1 MLRFAVSKVATVALRPAVSAAAPRAVXXXXXXXXXXXXXXXXXXXXXXVVKVVLADSLEWALSSPPPIHQFDEPPIVVEIAEA 83
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BLAST of mRNA_L-elsbetiae_contig827.17273.1 vs. uniprot
Match: A0A4D9CUY8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUY8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 9.410e-8
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:  142 VKV-VLADSLEWALSSPPPIHQFDEPPIVVEIAE 240
            VKV ++ DSLEW LSSPPP+HQFDEPPI+VE  E
Sbjct:   89 VKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPE 122
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BLAST of mRNA_L-elsbetiae_contig827.17273.1 vs. uniprot
Match: A0A7S1H457_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H457_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.600e-7
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:  139 VVKVVLADSLEWALSSPPPIHQFDEPPIVVEI 234
            VV  ++ADSLEW LSSPPP+HQF+EPP++VEI
Sbjct:   48 VVVPLIADSLEWTLSSPPPLHQFEEPPLIVEI 79
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BLAST of mRNA_L-elsbetiae_contig827.17273.1 vs. uniprot
Match: W7TKW3_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKW3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.000e-7
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:  142 VKV-VLADSLEWALSSPPPIHQFDEPPIVVEIAE 240
            VKV ++ DSLEW LSSPPP+HQFDEPPI+VE  E
Sbjct:  132 VKVPIVVDSLEWTLSSPPPLHQFDEPPIIVEFPE 165
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BLAST of mRNA_L-elsbetiae_contig827.17273.1 vs. uniprot
Match: A0A7S0GIJ8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIJ8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.930e-7
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  139 VVKVVLADSLEWALSSPPPIHQFDEPPIVVE 231
            VV  ++ DSLEW LSSPPP+HQFDEPP++VE
Sbjct:   36 VVVPIIVDSLEWTLSSPPPLHQFDEPPLMVE 66
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BLAST of mRNA_L-elsbetiae_contig827.17273.1 vs. uniprot
Match: A0A835Z9C3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9C3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 7.230e-7
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:  160 DSLEWALSSPPPIHQFDEPPIVVEIA 237
            DSLEW LSSPPPIHQF+EPPI+VE A
Sbjct:   50 DSLEWTLSSPPPIHQFEEPPIIVETA 75
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BLAST of mRNA_L-elsbetiae_contig827.17273.1 vs. uniprot
Match: A0A6U3NUB7_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NUB7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.690e-7
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:  139 VVKVVLADSLEWALSSPPPIHQFDEPPIVVEI 234
            VV  ++ DSLEW LSSPPP+HQF+EPP++VE+
Sbjct:   41 VVVPLITDSLEWTLSSPPPLHQFEEPPLIVEV 72
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BLAST of mRNA_L-elsbetiae_contig827.17273.1 vs. uniprot
Match: A0A448ZC19_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZC19_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.330e-6
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:  139 VVKVVLADSLEWALSSPPPIHQFDEPPIVVE 231
            VV  ++A+SLEWALSSPPP+HQF EPP+VVE
Sbjct:   33 VVVPLIANSLEWALSSPPPLHQFTEPPLVVE 63
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BLAST of mRNA_L-elsbetiae_contig827.17273.1 vs. uniprot
Match: A0A1E7FR17_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR17_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.350e-6
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:  139 VVKVVLADSLEWALSSPPPIHQFDEPPIVVE 231
            VV  ++A+SLEWALSSPPP+HQF EPP+VVE
Sbjct:   34 VVVPLIANSLEWALSSPPPLHQFTEPPLVVE 64
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BLAST of mRNA_L-elsbetiae_contig827.17273.1 vs. uniprot
Match: A0A7S2WGT9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WGT9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.570e-6
Identity = 20/32 (62.50%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:  139 VVKVVLADSLEWALSSPPPIHQFDEPPIVVEI 234
            V+  ++ DSLEW LSSPPP+HQF+EPP++VE+
Sbjct:   41 VIVPLVTDSLEWTLSSPPPLHQFEEPPLIVEV 72
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig827.17273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LF69_ECTSI5.850e-2493.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CUY8_9STRA9.410e-873.53Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1H457_9STRA1.600e-771.88Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
W7TKW3_9STRA2.000e-773.53Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S0GIJ8_9STRA4.930e-770.97Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A835Z9C3_9STRA7.230e-784.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U3NUB7_9STRA7.690e-765.63Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A448ZC19_9STRA1.330e-674.19Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7FR17_9STRA1.350e-674.19Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2WGT9_9STRA1.570e-662.50Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig827contigL-elsbetiae_contig827:25524..25769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_001880.1
Exons1
Model size246
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.6010435-CDS-L-elsbetiae_contig827:25523..257691622816910.6010435-CDS-L-elsbetiae_contig827:25523..25769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig827 25524..25769 +
1691683905.7662904-CDS-L-elsbetiae_contig827:25523..257691691683905.7662904-CDS-L-elsbetiae_contig827:25523..25769Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig827 25524..25769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig827.17273.1prot_L-elsbetiae_contig827.17273.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig827 25524..25769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig827.17273.1

>prot_L-elsbetiae_contig827.17273.1 ID=prot_L-elsbetiae_contig827.17273.1|Name=mRNA_L-elsbetiae_contig827.17273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MLRFAVSKVAAVALRPAVCAAAPRAAVATTVQQQQKRFFSAKEDEEVVKV
VLADSLEWALSSPPPIHQFDEPPIVVEIAEA*
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mRNA from alignment at L-elsbetiae_contig827:25524..25769+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig827.17273.1 ID=mRNA_L-elsbetiae_contig827.17273.1|Name=mRNA_L-elsbetiae_contig827.17273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=246bp|location=Sequence derived from alignment at L-elsbetiae_contig827:25524..25769+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCGCTTCGCCGTCTCCAAGGTCGCGGCGGTAGCCCTCAGACCCGC
CGTGTGCGCGGCGGCACCGCGGGCGGCCGTAGCAACAACCGTTCAGCAGC
AACAGAAGCGCTTCTTTTCGGCGAAGGAGGACGAGGAAGTCGTCAAGGTC
GTGCTGGCGGACTCGCTCGAGTGGGCACTCTCCAGCCCGCCGCCGATCCA
CCAGTTCGATGAGCCTCCGATCGTTGTAGAGATCGCCGAGGCGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig827:25524..25769+

>mRNA_L-elsbetiae_contig827.17273.1 ID=mRNA_L-elsbetiae_contig827.17273.1|Name=mRNA_L-elsbetiae_contig827.17273.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig827:25524..25769+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCGCTTCGCCGTCTCCAAGGTCGCGGCGGTAGCCCTCAGACCCGC
CGTGTGCGCGGCGGCACCGCGGGCGGCCGTAGCAACAACCGTTCAGCAGC
AACAGAAGCGCTTCTTTTCGGCGAAGGAGGACGAGGAAGTCGTCAAGGTC
GTGCTGGCGGACTCGCTCGAGTGGGCACTCTCCAGCCCGCCGCCGATCCA
CCAGTTCGATGAGCCTCCGATCGTTGTAGAGATCGCCGAGGCGTAAATGC
TGCGCTTCGCCGTCTCCAAGGTCGCGGCGGTAGCCCTCAGACCCGCCGTG
TGCGCGGCGGCACCGCGGGCGGCCGTAGCAACAACCGTTCAGCAGCAACA
GAAGCGCTTCTTTTCGGCGAAGGAGGACGAGGAAGTCGTCAAGGTCGTGC
TGGCGGACTCGCTCGAGTGGGCACTCTCCAGCCCGCCGCCGATCCACCAG
TTCGATGAGCCTCCGATCGTTGTAGAGATCGCCGAGGCGTAA
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