mRNA_L-elsbetiae_contig8266.17267.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8266.17267.1
Unique NamemRNA_L-elsbetiae_contig8266.17267.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8266.17267.1 vs. uniprot
Match: D7G0P1_ECTSI (Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P1_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 3.270e-40
Identity = 86/171 (50.29%), Postives = 110/171 (64.33%), Query Frame = 2 
Query:  215 TRSLLIGINYNDHKDTDLMLPGPDVDVENMKMFIKSQGYSLRKKECKILMDDGKHGYPCKEGIRDGFKWLVKGATQGDSLFFFFSGHGTQVKDLNGDEDDGQDEAIVPADHRTKKSELLIDDDIFTELVCAVPKGVTLTAVLDCCSSGTSLDLPYCINAEEIAGGTGSGVE 727
            T+ LLIGINY   +     L G   DV+ MK +I + GYS+   +CK+LMDD  HG P  +G+ +GF+WL   A  GDSLF  +SGHG  VKD +GDE D  DE +VP D+  K S  + DD+I  ELV  +P+GVTLT V+DCC SG+ LDLPY + A+E   GT S VE
Sbjct:  157 TKCLLIGINYIGQQGE---LAGCHNDVDMMKKYITTHGYSMDPADCKVLMDDNVHGMPDHKGVIEGFRWLTADAKAGDSLFMHYSGHGGSVKDTSGDEADNMDETLVPVDY--KSSGQITDDEILKELVMVLPEGVTLTVVMDCCHSGSILDLPYALKADE---GTISAVE 319
[Close]
BLAST of mRNA_L-elsbetiae_contig8266.17267.1 vs. uniprot
Match: A0A7S0XQF0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XQF0_HEMAN)

HSP 1 Score: 156 bits (395), Expect = 6.260e-38
Identity = 88/180 (48.89%), Postives = 110/180 (61.11%), Query Frame = 2 
Query:  212 RTRSLLIGINYNDHKDTDLMLPGPDVDVENMKMFIKSQGYSLRKKECKILMDDGKHGYPCKEGIRDGFKWLVKGATQGDSLFFFFSGHGTQVKDLNGDEDDGQDEAIVPADHRTKKSELLIDDDIFTELVCAVPKGVTLTAVLDCCSSGTSLDLPYCINAE-EIAGGTGSGVEQTMLHGP 748
            +TR+L +GINY   K     L G   DVE MK +I SQGY   +K  ++LMD  +H  P K+ I  GFKWLVK A  GDSLFF +SGHG+Q+ D NGDE DG DE +VP D+   ++  + DD IF ELV  +PKG  LT V+DCC SGT +DLPY   A+ E   G  SG    +   P
Sbjct:  142 KTRALFVGINYVGQKGE---LRGCHNDVETMKAYIASQGYD--EKNMRVLMDTKQHQQPTKDNILAGFKWLVKDAKAGDSLFFHYSGHGSQLPDDNGDEADGYDETLVPVDYH--RAGQIRDDTIFQELVAVLPKGCKLTCVMDCCHSGTIMDLPYIFTADNEGISGYNSGKINNLQQNP 314
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BLAST of mRNA_L-elsbetiae_contig8266.17267.1 vs. uniprot
Match: A0A7S0MFT1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFT1_9CRYP)

HSP 1 Score: 149 bits (376), Expect = 6.640e-36
Identity = 81/164 (49.39%), Postives = 104/164 (63.41%), Query Frame = 2 
Query:  206 RSRTRSLLIGINYNDHKDTDLMLPGPDVDVENMKMFIKSQGYSLRKKECKILMDDGKHGYPCKEGIRDGFKWLVKGATQGDSLFFFFSGHGTQVKDLNGDEDDGQDEAIVPADHRTKKSELLIDDDIFTELVCAVPKGVTLTAVLDCCSSGTSLDLPYCINAEE 697
            + RTR+L IGINY  H   +L   G   DVE MK F+  QG+   +   K L+DDGK+  P K  +    KWLV+GA +GDSLF  +SGHG Q++D  GDE DG DE +VP D++TK    + DDD+  ELV  +P+GV LT V+DCC SG+ LDLPY   A E
Sbjct:  138 QGRTRALFIGINYVGHSPGELR--GCHNDVEKMKRFVLKQGFD--EANMKFLLDDGKNIVPNKVEVLTALKWLVQGAKEGDSLFMHYSGHGGQLRDDTGDEADGFDETLVPLDYQTKGQ--IRDDDLLKELVLPLPEGVLLTVVMDCCHSGSILDLPYEFTATE 295
[Close]
BLAST of mRNA_L-elsbetiae_contig8266.17267.1 vs. uniprot
Match: A0A835YV30_9STRA (Caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV30_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.230e-35
Identity = 79/162 (48.77%), Postives = 100/162 (61.73%), Query Frame = 2 
Query:  212 RTRSLLIGINYNDHKDTDLMLPGPDVDVENMKMFIKSQGYSLRKKECKILMDDGKHGYPCKEGIRDGFKWLVKGATQGDSLFFFFSGHGTQVKDLNGDEDDGQDEAIVPADHRTKKSELLIDDDIFTELVCAVPKGVTLTAVLDCCSSGTSLDLPYCINAEE 697
            R RSLLIGINY   ++    L G   DV  MK +I SQG++       +L+DDG+H  P    I  GF+WLV GA  GDSLFF +SGHG  V D NGDE DG DE I+P D+ T     + DDDI+  LV  +P GV  T V+DCC SGT +DLPY ++ ++
Sbjct:   36 RHRSLLIGINYRGQRNE---LRGCHNDVFAMKRYITSQGFTETADTMCVLVDDGRHSSPTCATIVAGFRWLVDGARAGDSLFFHYSGHGGSVPDDNGDEADGMDETILPLDYLTAGQ--IRDDDIYKLLVKPLPHGVEFTIVMDCCHSGTIIDLPYSLSVDD 192
[Close]
BLAST of mRNA_L-elsbetiae_contig8266.17267.1 vs. uniprot
Match: D8LJ59_ECTSI (Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ59_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 4.840e-35
Identity = 82/175 (46.86%), Postives = 106/175 (60.57%), Query Frame = 2 
Query:  218 RSLLIGINYNDHKDTDLMLPGPDVDVENMKMFIKSQGYSLRKKECKILMDDGKHGYPCKEGIRDGFKWLVKGATQGDSLFFFFSGHGTQVKDLNGDEDDGQDEAIVPADHRTKKSELLIDDDIFTELVCAVPKGVTLTAVLDCCSSGTSLDLPYCINAE----EIAGGTGSGVEQ 730
            ++LLIGINY   K     L G   DV+ M+ +I + GY       KI+ DDG+H  P KE I    KWLV GA  GDSLF  +SGHG  VKD  GDE+D +DE ++P D+   KS  + DD+I  ELV  +P+GV L+ V+DCC SG+ LDLPY  +A+    E+    GSGV Q
Sbjct:  167 KALLIGINYTGGKGE---LKGCHNDVKQMREYITTHGYPADGANLKIVSDDGEHEEPSKENILKAIKWLVHGAKAGDSLFMHYSGHGGSVKDNTGDEEDNKDETMIPVDYM--KSGQIKDDEILKELVMPLPEGVVLSVVMDCCHSGSILDLPYSFDAKDGALELVEAGGSGVMQ 336
[Close]
BLAST of mRNA_L-elsbetiae_contig8266.17267.1 vs. uniprot
Match: A0A7S4R0W6_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R0W6_9DINO)

HSP 1 Score: 150 bits (379), Expect = 6.060e-35
Identity = 78/160 (48.75%), Postives = 106/160 (66.25%), Query Frame = 2 
Query:  218 RSLLIGINYNDHKDTDLMLPGPDVDVENMKMFIKSQGYSLRKKECKILMDDGKHGYPCKEGIRDGFKWLVKGATQGDSLFFFFSGHGTQVKDLNGDEDDGQDEAIVPADHRTKKSELLIDDDIFTELVCAVPKGVTLTAVLDCCSSGTSLDLPYCINAEE 697
            R+LL+GINY     T   L G   DVE M  +++  GYS  +   K+LMDDG+H  P +E + +  +WLV GA+ GDSLFF +SGHG  V+D +GDE DG+DE + P D+ +  + L+ DD++F  LV  +P+GVTLT VLDCC SGT LDLPY   A++
Sbjct:  299 RALLVGINY---VGTSSELRGCHNDVETMSRYLEDHGYS--QSGMKVLMDDGEHENPSREAMAEAMRWLVDGASAGDSLFFHYSGHGASVRDDDGDEADGKDECLCPVDYDS--AGLMRDDEVFKLLVGPLPEGVTLTCVLDCCHSGTILDLPYMFKADD 451
[Close]
BLAST of mRNA_L-elsbetiae_contig8266.17267.1 vs. uniprot
Match: A0A7S0VZ79_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VZ79_9CRYP)

HSP 1 Score: 147 bits (370), Expect = 7.760e-35
Identity = 77/178 (43.26%), Postives = 108/178 (60.67%), Query Frame = 2 
Query:  173 NQPQVGAPNKRRSRTRSLLIGINYNDHKDTDLMLPGPDVDVENMKMFIKSQGYSLRKKECKILMDDGKHGYPCKEGIRDGFKWLVKGATQGDSLFFFFSGHGTQVKDLNGDEDDGQDEAIVPADHRTKKSELLIDDDIFTELVCAVPKGVTLTAVLDCCSSGTSLDLPYCINAEEIAG 706
            NQP    P   R RT+SLLIGINY      +L+  G   DV  M+ +I S G+S      ++L+DDG    P K  I +  KWL++ A  GD+LFF FSGHG Q +DL+GDE  G D+ ++P DH  K+S  ++DDDI  +++  +P+GV +  ++DCC SGT +DLPY I  +   G
Sbjct:  161 NQPVTIKPPAAR-RTKSLLIGINYRGQGQGELL--GCHNDVRKMQQWITSHGFSSSPDRQQMLLDDGVSPAPTKANIWNAMKWLIQDAQPGDALFFHFSGHGGQTRDLSGDEASGFDQTMIPVDH--KQSGTILDDDILAQIIKPLPRGVDMFCIMDCCHSGTIMDLPYTITVDPKTG 333
[Close]
BLAST of mRNA_L-elsbetiae_contig8266.17267.1 vs. uniprot
Match: A0A7S1HEZ4_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEZ4_HEMAN)

HSP 1 Score: 145 bits (366), Expect = 8.030e-34
Identity = 77/178 (43.26%), Postives = 108/178 (60.67%), Query Frame = 2 
Query:  173 NQPQVGAPNKRRSRTRSLLIGINYNDHKDTDLMLPGPDVDVENMKMFIKSQGYSLRKKECKILMDDGKHGYPCKEGIRDGFKWLVKGATQGDSLFFFFSGHGTQVKDLNGDEDDGQDEAIVPADHRTKKSELLIDDDIFTELVCAVPKGVTLTAVLDCCSSGTSLDLPYCINAEEIAG 706
            NQP +  P   R RT+SLLIGINY      +L+  G   DV  M+ +I S G+S      +IL+DDG    P K+ I +   WL+  A  GD+LFF FSGHG Q +DL+GDE  G D+ +VP DH  K+S  ++DDDI  +++  +P+GV +  ++DCC SGT +DLPY +  +   G
Sbjct:  163 NQPVMIKPPAAR-RTKSLLIGINYRGQGQGELL--GCHNDVRKMQQWITSHGFSSSPDRQQILLDDGVSPAPTKKNIWNAMLWLISDAQPGDALFFHFSGHGGQTRDLSGDEASGFDQTMVPVDH--KESGTILDDDILAQIIKPLPRGVDMFCLMDCCHSGTIMDLPYTMTVDPTTG 335
[Close]
BLAST of mRNA_L-elsbetiae_contig8266.17267.1 vs. uniprot
Match: A0A2R5G0J8_9STRA (Metacaspase-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G0J8_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.890e-33
Identity = 89/232 (38.36%), Postives = 128/232 (55.17%), Query Frame = 2 
Query:    2 SVFLSIEPVSLVSLTMGSMFDTGWRLVDYRIAQHLARGSIVAFCHRFAELFPVSWNYNQPQVGAPNKRRSRTRSLLIGINYNDHKDTDLMLPGPDVDVENMKMFIKSQGYSLRKKECKILMDDGKHGYPCKEGIRDGFKWLVKGATQGDSLFFFFSGHGTQVKDLNGDEDDGQDEAIVPADHRTKKSELLIDDDIFTELVCAVPKGVTLTAVLDCCSSGTSLDLPYCINAEE 697
            S+  +IE      LT   + +   +++D +    + + S      R  ++    +N   P   + NKR++    LL+GINY   K     L G   DV +MK F++ QG+     E ++L+DDG+   P  + I  GF WL +G + GDSLFF +SGHG  V D +GDE DG+DE IVP D ++     + DD IF ELV  V +G+TL+ ++DCC SGT LDLPY I A E
Sbjct:   96 SLLAAIERNGSEDLTWVELLEAMRKILDEKGYSQIPQLS----ASRKLDVAAEKFNLINPDESSGNKRKA----LLVGINYVGQKGE---LAGCHNDVISMKRFLEKQGFQ----EFRVLLDDGEAENPTADNIMKGFDWLTEGNSTGDSLFFHYSGHGGYVADDSGDEKDGRDETIVPVDFQSTGQ--IRDDLIFKELVLPVDEGITLSCLMDCCHSGTVLDLPYMIKASE 310
[Close]
BLAST of mRNA_L-elsbetiae_contig8266.17267.1 vs. uniprot
Match: A0A7S4JU28_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JU28_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.840e-33
Identity = 73/159 (45.91%), Postives = 101/159 (63.52%), Query Frame = 2 
Query:  212 RTRSLLIGINYNDHKDTDLMLPGPDVDVENMKMFIKSQGYSLRKKECKILMDDGKHGYPCKEGIRDGFKWLVKGATQGDSLFFFFSGHGTQVKDLNGDEDDGQDEAIVPADHRTKKSELLIDDDIFTELVCAVPKGVTLTAVLDCCSSGTSLDLPYCIN 688
            + R+L IGINY+  +     L G   DV+N+K F++    + R  E ++L DDGK   P +  I  GFKWL  GA  GDSL   +SGHG  VKD +GDE+DG DE ++P DH+T  + +++DD++   LV  +PKGV LTA++DCC S + LDLPY  N
Sbjct:   46 KRRALFIGINYHGQRGE---LRGCINDVDNIKRFLQQ---NFRLDEIRVLTDDGKTPSPTRANILAGFKWLRSGAKAGDSLILHYSGHGGSVKDTDGDEEDGMDETLIPVDHQT--AGIIVDDEVHDVLVRGLPKGVRLTAIMDCCHSESMLDLPYTYN 196
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8266.17267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0P1_ECTSI3.270e-4050.29Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S0XQF0_HEMAN6.260e-3848.89Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S0MFT1_9CRYP6.640e-3649.39Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A835YV30_9STRA4.230e-3548.77Caspase domain-containing protein n=1 Tax=Tribonem... [more]
D8LJ59_ECTSI4.840e-3546.86Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A7S4R0W6_9DINO6.060e-3548.75Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S0VZ79_9CRYP7.760e-3543.26Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1HEZ4_HEMAN8.030e-3443.26Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A2R5G0J8_9STRA1.890e-3338.36Metacaspase-1 n=1 Tax=Hondaea fermentalgiana TaxID... [more]
A0A7S4JU28_9STRA3.840e-3345.91Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8266contigL-elsbetiae_contig8266:2328..6937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue3.6e-33
Seed eggNOG ortholog2880.D8LJ59
Preferred nameMCA5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-type peptidase activity
EggNOG OGsKOG1546@1,KOG1546@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size2312
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8266.17267.1prot_L-elsbetiae_contig8266.17267.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8266 3865..6891 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.8470669-UTR-L-elsbetiae_contig8266:2327..38641622816909.8470669-UTR-L-elsbetiae_contig8266:2327..3864Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8266 2328..3864 -
1691683905.1058192-UTR-L-elsbetiae_contig8266:2327..38641691683905.1058192-UTR-L-elsbetiae_contig8266:2327..3864Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8266 2328..3864 -
1622816909.9344592-UTR-L-elsbetiae_contig8266:6891..69371622816909.9344592-UTR-L-elsbetiae_contig8266:6891..6937Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8266 6892..6937 -
1691683905.2064118-UTR-L-elsbetiae_contig8266:6891..69371691683905.2064118-UTR-L-elsbetiae_contig8266:6891..6937Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8266 6892..6937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.860174-CDS-L-elsbetiae_contig8266:3864..39091622816909.860174-CDS-L-elsbetiae_contig8266:3864..3909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 3865..3909 -
1691683905.123924-CDS-L-elsbetiae_contig8266:3864..39091691683905.123924-CDS-L-elsbetiae_contig8266:3864..3909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 3865..3909 -
1622816909.8706827-CDS-L-elsbetiae_contig8266:4539..46741622816909.8706827-CDS-L-elsbetiae_contig8266:4539..4674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 4540..4674 -
1691683905.1331472-CDS-L-elsbetiae_contig8266:4539..46741691683905.1331472-CDS-L-elsbetiae_contig8266:4539..4674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 4540..4674 -
1622816909.881415-CDS-L-elsbetiae_contig8266:5508..56331622816909.881415-CDS-L-elsbetiae_contig8266:5508..5633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 5509..5633 -
1691683905.1437635-CDS-L-elsbetiae_contig8266:5508..56331691683905.1437635-CDS-L-elsbetiae_contig8266:5508..5633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 5509..5633 -
1622816909.8941133-CDS-L-elsbetiae_contig8266:6000..60531622816909.8941133-CDS-L-elsbetiae_contig8266:6000..6053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 6001..6053 -
1691683905.1636627-CDS-L-elsbetiae_contig8266:6000..60531691683905.1636627-CDS-L-elsbetiae_contig8266:6000..6053Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 6001..6053 -
1622816909.90766-CDS-L-elsbetiae_contig8266:6285..63771622816909.90766-CDS-L-elsbetiae_contig8266:6285..6377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 6286..6377 -
1691683905.176826-CDS-L-elsbetiae_contig8266:6285..63771691683905.176826-CDS-L-elsbetiae_contig8266:6285..6377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 6286..6377 -
1622816909.9230707-CDS-L-elsbetiae_contig8266:6612..68911622816909.9230707-CDS-L-elsbetiae_contig8266:6612..6891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 6613..6891 -
1691683905.194101-CDS-L-elsbetiae_contig8266:6612..68911691683905.194101-CDS-L-elsbetiae_contig8266:6612..6891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8266 6613..6891 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8266.17267.1

>prot_L-elsbetiae_contig8266.17267.1 ID=prot_L-elsbetiae_contig8266.17267.1|Name=mRNA_L-elsbetiae_contig8266.17267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
MGSMFDTGWRLVDYRIAQHLARGSIVAFCHRFAELFPVSWNYNQPQVGAP
NKRRSRTRSLLIGINYNDHKDTDLMLPGPDVDVENMKMFIKSQGYSLRKK
ECKILMDDGKHGYPCKEGIRDGFKWLVKGATQGDSLFFFFSGHGTQVKDL
NGDEDDGQDEAIVPADHRTKKSELLIDDDIFTELVCAVPKGVTLTAVLDC
CSSGTSLDLPYCINAEEIAGGTGSGVEQTMLHGPGRVRMLAG*
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mRNA from alignment at L-elsbetiae_contig8266:2328..6937-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8266.17267.1 ID=mRNA_L-elsbetiae_contig8266.17267.1|Name=mRNA_L-elsbetiae_contig8266.17267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4610bp|location=Sequence derived from alignment at L-elsbetiae_contig8266:2328..6937- (Laminarionema elsbetiae ELsaHSoW15)
GAGCGTTTTTCTTTCAATCGAACCCGTCTCGCTTGTATCTTTGACTATGG
GCTCGATGTTCGATACGGGCTGGCGTCTTGTAGACTACCGTATTGCACAG
CATTTAGCTCGAGGTTCGATAGTTGCATTCTGTCATCGCTTTGCTGAGCT
TTTCCCTGTGTCATGGAACTACAACCAACCGCAGGTCGGTGCACCAAACA
AACGGCGAAGCAGGACGCGTTCTCTTCTCATCGGCATCAACTACAATGAT
CATAAGGATACTGACTTAATGCTGCCCGGGCCCGATGTCGACGTCGAAAA
CATGAAGATGTTCATTAAATCCCAAGTGAGCGCGTATGCACAATACTGCA
CTCCCCTTGTAAGCCAGCGTCGTCAGCGCCACGCGTAGTGCGTGCCACTC
TAATCGTGAGAAAAAGAGATGAGGGTATGTAACGCTTGAAAAATTCCACT
GATTTTTGTTTGAGACTGCTTGCTCTTGACAATTTAAGTGGCAAGCGGTG
AAATTTGGACCATGTCTGGAATTCCTGCCATTTGCACGTTTTTCTGTCCC
TCAATCTCAGGGGTACAGCCTGCGGAAGAAAGAGTGCAAAATTCTCATGG
ACGATGGGAAGCACGGGTATCCCTGCAAAGAAGGCATTCGTGACGGATTC
AAGCAAGTACTGCTGAGCCACACTAAATACAGTATTATCTAGGAGATTGT
GTACCGAGAAAGCAGCGTTCCAGATGACAGCGTCACTTCGATTCTGAAGT
ACATATGTCCAGGGTTTGAACTGCTGCCGCTGGTAAAGCGTTTATTTGCC
TTCTCGTTCTATTTTTGGGGTTATTTACTCCTTAATTGATTGTGACGGTA
TTTTTTCATGTTTTCTACGTACGACAAACTTCAGGTGGTTGGTAAAAGGG
GCGACTCAAGGAGATTCCCTATTCTTCTTCTTCTCAGGTAAGCTACTACA
CATACACGCTTTTCGTCGTACAAGAGTCGTGAGCGTCTGATCGTTTTTCC
GAGGACAGACAACCTCCTTGCCTCCCCAGCACCAATATATGTCTAGCTCC
AGGATGGCGCTTGCGCGCCGGAGAGGAAGGATCTGCTCAATCAGCAAAAG
TTAAAAGGTATATCTAGTACACAGCCGGCGAAATAGAATCGCGCACACAA
CACAAATATTTTGCTAACCCGTTTGAGTCCCGGTGCTAGCATGCGGACAG
CGAACAAGCTGCTTGATCAACCTGTTGAAATATTCTTTAGTGCAAGTACA
CAGGACAGGCCAATCGAACACGTGCCTCCCCTGAACGTTTGCTGGTTTCG
GTAGGCCATGGTACACAGGTTAAAGACCTCAATGGTGATGAGGACGATGG
CCAGGACGAGGCGATTGTTCCGGCGGACCACAGGACGAAGAAGTCGGAGT
TATTGATCGATGACGACATATTTACAGAGGTGAGTGAACAAGTCAGAGCC
ACGAGCTGACCTACAGCTCTGGAAAATACAACGTTGGTGGTTTTAGAGAA
ACGAGATTCCGGGGTTACTGAAACCAATTTTGTGACAGATTCCATGTCGC
GTTGAGTATACAAACTGTCGCGGTTTTCGGGGTTTTTCAAAACAATGTTT
GGTGGTGAGATATCGGCAATATACTGGATTTTCGGTAAGCTACAAGGAAA
TCGGGGAAATCCGGTATAGACTAATAAGCAGGAAAACCCATATATCTTTC
CCAATTGTAGCCCTAACCCTACCATACTGCTGGACATTACGCCACTATCA
CAAACGCACCCAGCCTGCGTAGTGCCCTGCACTTCGTGTGCTACAACGCG
CGTTTGCCCTGCACTGTTGAATTCGACGTTACCTGACAGTTATTCTGCAA
CTTATCAATATTGAATTCATCAAGCCTGGGGGGTTCGTGTGAAGTTGTTT
GTGTTCGGCTGTTGGCATGAGTGCGTTTCCCCACGGAAAATTAGCGGAAA
ATCCACTTTAAGTGTGAAACGCGCAGGGGTCGATAGGTGATCAGGGTCAA
CCGACAAAGAGGTGGCGTACGGATTTCTCCGGTTCTACTGTCTTACACGA
TACATAGGGCGCATTGGGCATCCTTCTGGAATGCGGCGTCCATAACGCTG
TATTCGAACCGAGCGAATGCTAGAGCTGCCCTAGAACATCAATGGGCACT
GTCGATTGCAGTGCCTATCTACACACTTCGTAGTATATATATATCGATTC
CAAACCCCTCTAATAGTTGTTTTTAACACGCGCGCTTGCGCTGCATAACC
GCGAAACTCCAAGCTGGTCTGCGCCGTTCCGAAGGGCGTCACCCTCACGG
CGGTCCTGGATTGCTGCTCAAGTGGAACCAGCTTGGACCTCCCGTATTGT
ATTAATGCCGAAGAAATCGCGGGCGGTACAGGCTCCGGGGTGGAACAGGT
GAGCTGGCGTGCGACCCGAAAAACCTGTTTGACCTGGCAGAGTTGTGCAG
GGGAGGTGATGTATTTTTCACATTCAAGGTGTTTTTTTACTGGGTGGGGC
GGGTCAATATTACAATTCTACTTTGTATGGAGTCGTTAATTCACCACACA
GAGATCGCGTGGGAGTTTTTTCTCTTTTGGTTTTCTGATTTATTAAAAGC
CTGAGCTGGACGATGAGTGCAGAGGTTACGCAATGAACCATAAACCACAC
GGCGACAAGATACACATCCACATTATAATCCGACAACGATAGATGCCCCA
AGAAGCACGGAATATAAATAAAGTAGGGGCTTTGGGTGCGCGTCGACTGG
TGAATCCCGATGACCCCCCTACGTGCGCGATCAAGGAAAAAGGCACAAAA
TGTCCATAGTCCTAGACTTATGACCCTGGCAAGAGGTTGGTCTGTTGGTG
ATCACGAACGCGAAATCGCCCAGAGCAAGCATCGAAACATACGCTTTCAG
TGCCAGCCATATATAGGTGGCAATCGGCATGGGAAACATATCATTACTAC
AATTTCGTCCGTGACCTCTATACTACAACATGCGAATGCTGCGCACGCTC
GTTTCCTTATTGTGCGCTATGCGCACAGACAATGCTACATGGTCCCGGGA
GAGTCCGCATGCTGGCCGGATAACATGCGATCAGGCAGGCGTGGAGGAAC
ACCGGGCGTCGTTCCAAGTTCACATGCGTCAAAACGGAGAGTCACCATAG
TCTAGTTGGTTCCGATATCGAAGCCGTCGATATCTTTCTCTTCGTCTGTG
TGTGTGTGTCCTTCCCATTTATTTTGGCAACAGTCCCCCCAAGTGGAGAC
GTGTACTACACCTTGCGGTGTACTTAGAGGTATTACACTTCGCAGTGCAT
TTGTCTGTACAACTCACCAACCGGGGTCACACAGGAGGGGGTGAACACTG
GGTCTCCAAGCTAGTAACTGCTTCTGGTGGAAATACCCCTGTTGAACTTG
AGGAATATGTAGATTCAACAAAAAATCGGGGATGGATGAGCATTGCGTGC
GCCAAGACACATGATGCACAAGGGGGGTCCTGCAGCATCCTCAGTATCTC
CGAACGTAACCGTTTGCGAAACAAGATACACGCGAGGAGGGCGAAATACG
GTGGTGTATCGTATGGATTCCTGAATGCTTCAGGTTGAACGCAAACGCCG
GGATCGCGGACAAAAATCCATTCATTCGAAGATAAATAGTCCGGGTGGGG
CTGTATCTATGTAGTAAAAGACGATGGGGGTGGAGCTGCATAGAAACTAG
CGTAACAAGGCGGCTTTGCTCATCAAGCCATTCCTCGGTATTGCATACCA
TGGCAGCTAGTAATAAATACTCCTTATGGCGCGCACACCCACGATCAGAC
ACACTTCGCGTGTTAGCATCGTTCAGCTTGCGGGTTATTGTGGACTTCGA
GCGAAGGGCGGGGTTTGATCCTCGCAGGGAAAAGCGGCCGAGTAACGGGA
GGGGGGGAGGTGTACTACACATGCAACCTGACTGAGGGAGAGTATCTAGG
GAAGCGGCCGATAAAGTTGAAACCGGTCTGCTTTGTAGCAGTCCATTGTT
GTATAGTCTATATTCATCTGCGAGGTGGTGCTACTGACGGCGTTCGTTCC
TGGCTGGCTGAGGAACGACAGCAACAAATGTTGAGCGATCTGTGCAGAAG
AGTCACGACCGATTGAGTCATGTTTTAAATTGTAGGGTATGGTAGTATTT
AAATATCGCAGCTCGGTGGGAGAGAAGTAAGTGTTGTTGGGTATATTCGG
TGAAGTACGTGTTGTCGCTTGAGTTATTAAACGTGTGTCGAAAACGTCCA
CATCGGAAACTTGCATCATCTATCTATAAGAGCTTCGCTTGCGATGTACC
ATACAGCTTTTCTACTTCTTGAGAAGTGTCGAGATTCGTGATGAAAAAGA
GGATCCTATGCGTTTGGTATTGGGCGGGGCTATCATACGTTTGGAAACGG
GGGTGCTTACGCTCGGCGCTTGGTTCAATATTGGGTGACGTTGTTATTAG
AGGTCCATTTGTGGGCAAGTGAAGGGTGAAGACACGGAAACCGCATGAGG
AATGAATGGCAATGGAGTTTAGATGACCGTGAAACTCCGTACGTATGTAG
ATATGTGACGTGGATGGAGAATTCAAACAAAAACTCACAGATGGTCGTCG
ACCGTCGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8266:2328..6937-

>mRNA_L-elsbetiae_contig8266.17267.1 ID=mRNA_L-elsbetiae_contig8266.17267.1|Name=mRNA_L-elsbetiae_contig8266.17267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig8266:2328..6937- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCTCGATGTTCGATACGGGCTGGCGTCTTGTAGACTACCGTATTGC
ACAGCATTTAGCTCGAGGTTCGATAGTTGCATTCTGTCATCGCTTTGCTG
AGCTTTTCCCTGTGTCATGGAACTACAACCAACCGCAGGTCGGTGCACCA
AACAAACGGCGAAGCAGGACGCGTTCTCTTCTCATCGGCATCAACTACAA
TGATCATAAGGATACTGACTTAATGCTGCCCGGGCCCGATGTCGACGTCG
AAAACATGAAGATGTTCATTAAATCCCAAATGGGCTCGATGTTCGATACG
GGCTGGCGTCTTGTAGACTACCGTATTGCACAGCATTTAGCTCGAGGTTC
GATAGTTGCATTCTGTCATCGCTTTGCTGAGCTTTTCCCTGTGTCATGGA
ACTACAACCAACCGCAGGTCGGTGCACCAAACAAACGGCGAAGCAGGACG
CGTTCTCTTCTCATCGGCATCAACTACAATGATCATAAGGATACTGACTT
AATGCTGCCCGGGCCCGATGTCGACGTCGAAAACATGAAGATGTTCATTA
AATCCCAAGGGTACAGCCTGCGGAAGAAAGAGTGCAAAATTCTCATGGAC
GATGGGAAGCACGGGTATCCCTGCAAAGAAGGCATTCGTGACGGATTCAA
GGGTACAGCCTGCGGAAGAAAGAGTGCAAAATTCTCATGGACGATGGGAA
GCACGGGTATCCCTGCAAAGAAGGCATTCGTGACGGATTCAAGTGGTTGG
TAAAAGGGGCGACTCAAGGAGATTCCCTATTCTTCTTCTTCTCAGGTGGT
TGGTAAAAGGGGCGACTCAAGGAGATTCCCTATTCTTCTTCTTCTCAGGC
CATGGTACACAGGTTAAAGACCTCAATGGTGATGAGGACGATGGCCAGGA
CGAGGCGATTGTTCCGGCGGACCACAGGACGAAGAAGTCGGAGTTATTGA
TCGATGACGACATATTTACAGAGGCCATGGTACACAGGTTAAAGACCTCA
ATGGTGATGAGGACGATGGCCAGGACGAGGCGATTGTTCCGGCGGACCAC
AGGACGAAGAAGTCGGAGTTATTGATCGATGACGACATATTTACAGAGCT
GGTCTGCGCCGTTCCGAAGGGCGTCACCCTCACGGCGGTCCTGGATTGCT
GCTCAAGTGGAACCAGCTTGGACCTCCCGTATTGTATTAATGCCGAAGAA
ATCGCGGGCGGTACAGGCTCCGGGGTGGAACAGCTGGTCTGCGCCGTTCC
GAAGGGCGTCACCCTCACGGCGGTCCTGGATTGCTGCTCAAGTGGAACCA
GCTTGGACCTCCCGTATTGTATTAATGCCGAAGAAATCGCGGGCGGTACA
GGCTCCGGGGTGGAACAGACAATGCTACATGGTCCCGGGAGAGTCCGCAT
GCTGGCCGGATAAACAATGCTACATGGTCCCGGGAGAGTCCGCATGCTGG
CCGGATAA
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