mRNA_L-elsbetiae_contig8263.17265.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8263.17265.1
Unique NamemRNA_L-elsbetiae_contig8263.17265.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8263.17265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8263contigL-elsbetiae_contig8263:2738..4368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size626
Cds size357
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8263.17265.1prot_L-elsbetiae_contig8263.17265.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8263 3005..4368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.6436772-UTR-L-elsbetiae_contig8263:2737..30041622816909.6436772-UTR-L-elsbetiae_contig8263:2737..3004Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8263 2738..3004 -
1691683904.9370267-UTR-L-elsbetiae_contig8263:2737..30041691683904.9370267-UTR-L-elsbetiae_contig8263:2737..3004Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8263 2738..3004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.6540256-CDS-L-elsbetiae_contig8263:3004..32851622816909.6540256-CDS-L-elsbetiae_contig8263:3004..3285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8263 3005..3285 -
1691683904.9532497-CDS-L-elsbetiae_contig8263:3004..32851691683904.9532497-CDS-L-elsbetiae_contig8263:3004..3285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8263 3005..3285 -
1622816909.666827-CDS-L-elsbetiae_contig8263:4292..43681622816909.666827-CDS-L-elsbetiae_contig8263:4292..4368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8263 4293..4368 -
1691683904.9643295-CDS-L-elsbetiae_contig8263:4292..43681691683904.9643295-CDS-L-elsbetiae_contig8263:4292..4368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8263 4293..4368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8263.17265.1

>prot_L-elsbetiae_contig8263.17265.1 ID=prot_L-elsbetiae_contig8263.17265.1|Name=mRNA_L-elsbetiae_contig8263.17265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
RTEPLLRGRVEPKSVFIHAEAGVLRESEKSRNSANRASGARAMLAARGTS
RAGGGTVSSRHARPAHGCRRPSPPPASPPPTGWRRQQPHHPPEDHHRCRK
RFYACGAMIAFPREERQD*
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mRNA from alignment at L-elsbetiae_contig8263:2738..4368-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8263.17265.1 ID=mRNA_L-elsbetiae_contig8263.17265.1|Name=mRNA_L-elsbetiae_contig8263.17265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1631bp|location=Sequence derived from alignment at L-elsbetiae_contig8263:2738..4368- (Laminarionema elsbetiae ELsaHSoW15)
AGAACAGAACCGCTACTGCGGGGTAGGGTGGAACCGAAGAGTGTCTTCAT
CCATGCCGAAGCTGGGGTTCTGAGAGGTGCGACAACAGTAGATAATCAAG
ATTTGCGTTGACACTTTGTTGATAACCGGAGGCTGCGCCTCTCTCCCGTA
CTCGGCAACCAAGTGAGAGCTAACTAGCTAGATAGGCTGCAAGGATCATA
ATTCCACATGACTTTTAAGTTAAGAAAAGTCGTTACCGACTGGAAAAGGA
TGCACCAAAGAGTTATGCGTTCAACATTAGCTAGTTAACATGCTAGATGA
CGCACGGCTGTGGTGTTTTCTGCGGCGGAACCTCATCTTTTGTCTGTTGG
ACACACACACACACACACACCCGTTTGGGTTTACACGTTTACACGGCAGA
GAGAGCCTACCCTTGCGCATGTCAGGCCCGTAATACCATAAAAAGATTCC
CCTGAGGGTTTTGTTGACCACTGCGGAAGCTAGAGCTCCCAAATGTTTGA
CAGCAATAGAGCGGCACGATCATGTTGACACCCTTGTTTTGAAAACAGTT
GGGGGAACAGGGGAAGGAAGGTTTGGGGGAGATATCTGCACCGTCATTTG
AGTTAGAGTCCATCACTTGGACTTGTTCTTGGTAAGTGATGAGGCCTTGT
TCCAACTACCTAGCAGTAGAGTCGTGAGACACGTGTTTAGATATTCCATT
CACCTCTTTTCGCTCCCGTCAGTAGTCTATGTACCGCTGCACCACCCTTC
GCGTCCGGAGCGCTGGGGTTGTGCATTCGTCGTGTGTGACAGCAACGATA
TTTTTGTGCCCACGGGCTGCCCTAAAAGGCCTCGAGTTAGTTCAACGTCG
TGTTTAGAACATTATTATTGACTTGTCCCCAACAGTTTTTTCTCAACGCC
AATAACTCTGTATATGCATAACCCCAACCATTGAACAGCAGGCAGTGGCA
CCATATGCAGTGAGGGACCGAAGAACAGAGAACGCCGTCCCTGCCAGTTT
CGTCTCAAATCTGCCAACGCTCTCTCGACAGCTCTCATCCCCCCGTGTCC
TGCCCCCGCCCCCACGCTCTCGGCCGCTATCAGAGTCCGAAAAAAGCAGG
AATTCTGCCAATCGTGCGTCAGGCGCCAGGGCCATGCTGGCGGCACGAGG
CACAAGCCGTGCGGGCGGCGGGACTGTCAGCAGCCGCCATGCCCGCCCAG
CGCACGGATGCCGCAGGCCTTCACCTCCCCCGGCTTCTCCCCCCCCCACG
GGGTGGCGGCGGCAACAGCCGCACCATCCGCCAGAAGACCATCACCGTTG
CCGCAAGCGCTTTTACGCTTGCGGTGCGATGATCGCCTTTCCTCGGGAGG
AGCGGCAGGATTGACGCCTGCGCACGGCGGGCGTTGGCGTCGGCGGCGTC
GTCGGCGATGGTCCGAGGCGCTGATAACACGGACGATAACACGGAGCATT
TGGGGTTAGAGGGCGGCAGCTGGAGGCGGCAGCTAGAGGAGGATAACGGC
GGTGCTAGTGTTGCTTTCGGCGGCGCGGCTGAAGAAGGCGAGGAAGAAGA
GCGCGAGCCAAAGGCAGAAGACGTTGGAGCTCCATTCGGCCTCCTCTCTG
AGTTCAGCAACGACGATGACGACGGTGCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8263:2738..4368-

>mRNA_L-elsbetiae_contig8263.17265.1 ID=mRNA_L-elsbetiae_contig8263.17265.1|Name=mRNA_L-elsbetiae_contig8263.17265.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig8263:2738..4368- (Laminarionema elsbetiae ELsaHSoW15)
AGAACAGAACCGCTACTGCGGGGTAGGGTGGAACCGAAGAGTGTCTTCAT
CCATGCCGAAGCTGGGGTTCTGAGAGAGAACAGAACCGCTACTGCGGGGT
AGGGTGGAACCGAAGAGTGTCTTCATCCATGCCGAAGCTGGGGTTCTGAG
AGAGTCCGAAAAAAGCAGGAATTCTGCCAATCGTGCGTCAGGCGCCAGGG
CCATGCTGGCGGCACGAGGCACAAGCCGTGCGGGCGGCGGGACTGTCAGC
AGCCGCCATGCCCGCCCAGCGCACGGATGCCGCAGGCCTTCACCTCCCCC
GGCTTCTCCCCCCCCCACGGGGTGGCGGCGGCAACAGCCGCACCATCCGC
CAGAAGACCATCACCGTTGCCGCAAGCGCTTTTACGCTTGCGGTGCGATG
ATCGCCTTTCCTCGGGAGGAGCGGCAGGATTGAAGTCCGAAAAAAGCAGG
AATTCTGCCAATCGTGCGTCAGGCGCCAGGGCCATGCTGGCGGCACGAGG
CACAAGCCGTGCGGGCGGCGGGACTGTCAGCAGCCGCCATGCCCGCCCAG
CGCACGGATGCCGCAGGCCTTCACCTCCCCCGGCTTCTCCCCCCCCCACG
GGGTGGCGGCGGCAACAGCCGCACCATCCGCCAGAAGACCATCACCGTTG
CCGCAAGCGCTTTTACGCTTGCGGTGCGATGATCGCCTTTCCTCGGGAGG
AGCGGCAGGATTGA
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