mRNA_L-elsbetiae_contig8255.17258.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8255.17258.1
Unique NamemRNA_L-elsbetiae_contig8255.17258.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8255.17258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8255contigL-elsbetiae_contig8255:1089..1665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size579
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.0417688-CDS-L-elsbetiae_contig8255:1088..14541622816909.0417688-CDS-L-elsbetiae_contig8255:1088..1454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8255 1089..1454 +
1691683904.4559402-CDS-L-elsbetiae_contig8255:1088..14541691683904.4559402-CDS-L-elsbetiae_contig8255:1088..1454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8255 1089..1454 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.0560992-UTR-L-elsbetiae_contig8255:1454..16651622816909.0560992-UTR-L-elsbetiae_contig8255:1454..1665Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8255 1455..1665 +
1691683904.466819-UTR-L-elsbetiae_contig8255:1454..16651691683904.466819-UTR-L-elsbetiae_contig8255:1454..1665Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8255 1455..1665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8255.17258.1prot_L-elsbetiae_contig8255.17258.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8255 1089..1454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8255.17258.1

>prot_L-elsbetiae_contig8255.17258.1 ID=prot_L-elsbetiae_contig8255.17258.1|Name=mRNA_L-elsbetiae_contig8255.17258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
PHDHLSNPAAIWCRRRRSPAVCDLSLAPVLTLLFGGLGLAAATVVRRPGP
HGLRVAPRLGHSPEPSPGGYPRGRRCRRRPPRPGGGYYGRGSARQQIASG
RSGRRSVGSEVLLLPLLPLLL*
back to top

mRNA from alignment at L-elsbetiae_contig8255:1089..1665+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8255.17258.1 ID=mRNA_L-elsbetiae_contig8255.17258.1|Name=mRNA_L-elsbetiae_contig8255.17258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=577bp|location=Sequence derived from alignment at L-elsbetiae_contig8255:1089..1665+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCATGACCACCTCTCGAACCCAGCTGCTATCTGGTGTCGCCGCCGCCG
AAGCCCCGCTGTTTGTGATCTGTCCCTGGCGCCGGTGCTGACTCTGCTCT
TCGGCGGACTGGGCCTGGCCGCTGCCACCGTTGTTCGACGCCCTGGCCCG
CACGGCCTCCGTGTGGCGCCGCGCCTCGGCCATAGCCCTGAACCGTCCCC
CGGCGGCTACCCTCGAGGACGCCGCTGCCGCCGCCGCCCCCCTCGCCCTG
GCGGCGGCTACTACGGCCGAGGGTCCGCTAGACAGCAAATCGCCAGCGGG
AGGAGCGGGAGAAGAAGCGTCGGGAGCGAAGTACTCCTCCTCCCGCTGCT
GCCCCTCCTCCTCTGACGGAGTTTGGTAGGTGGCTGGGTCGTCGGCCCCG
CTACCGCCACTCAACACGCGGAACAGACTAGGCGCACTGGTGCTCTCCTG
CTCCGCTCCCCGGGGTGGCAGCGGCGCAACGTCTGACGCCGACTGCGGTG
GCGGCTCGAGCAGCGCGGCCGGCCGCTCACCAGTGGCCGCTGCAGCCGCT
TCGTCGGCGGTAGCCATGACAGTCGGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8255:1089..1665+

>mRNA_L-elsbetiae_contig8255.17258.1 ID=mRNA_L-elsbetiae_contig8255.17258.1|Name=mRNA_L-elsbetiae_contig8255.17258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig8255:1089..1665+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCATGACCACCTCTCGAACCCAGCTGCTATCTGGTGTCGCCGCCGCCG
AAGCCCCGCTGTTTGTGATCTGTCCCTGGCGCCGGTGCTGACTCTGCTCT
TCGGCGGACTGGGCCTGGCCGCTGCCACCGTTGTTCGACGCCCTGGCCCG
CACGGCCTCCGTGTGGCGCCGCGCCTCGGCCATAGCCCTGAACCGTCCCC
CGGCGGCTACCCTCGAGGACGCCGCTGCCGCCGCCGCCCCCCTCGCCCTG
GCGGCGGCTACTACGGCCGAGGGTCCGCTAGACAGCAAATCGCCAGCGGG
AGGAGCGGGAGAAGAAGCGTCGGGAGCGAAGTACTCCTCCTCCCGCTGCT
GCCCCTCCTCCTCTGACCCCATGACCACCTCTCGAACCCAGCTGCTATCT
GGTGTCGCCGCCGCCGAAGCCCCGCTGTTTGTGATCTGTCCCTGGCGCCG
GTGCTGACTCTGCTCTTCGGCGGACTGGGCCTGGCCGCTGCCACCGTTGT
TCGACGCCCTGGCCCGCACGGCCTCCGTGTGGCGCCGCGCCTCGGCCATA
GCCCTGAACCGTCCCCCGGCGGCTACCCTCGAGGACGCCGCTGCCGCCGC
CGCCCCCCTCGCCCTGGCGGCGGCTACTACGGCCGAGGGTCCGCTAGACA
GCAAATCGCCAGCGGGAGGAGCGGGAGAAGAAGCGTCGGGAGCGAAGTAC
TCCTCCTCCCGCTGCTGCCCCTCCTCCTCTGA
back to top