mRNA_L-elsbetiae_contig8253.17257.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8253.17257.1
Unique NamemRNA_L-elsbetiae_contig8253.17257.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8253.17257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8253contigL-elsbetiae_contig8253:3949..4788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size840
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8253.17257.1prot_L-elsbetiae_contig8253.17257.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8253 4019..4456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.9009862-UTR-L-elsbetiae_contig8253:3948..40181622816908.9009862-UTR-L-elsbetiae_contig8253:3948..4018Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8253 3949..4018 +
1691683904.3517697-UTR-L-elsbetiae_contig8253:3948..40181691683904.3517697-UTR-L-elsbetiae_contig8253:3948..4018Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8253 3949..4018 +
1622816908.9280324-UTR-L-elsbetiae_contig8253:4456..47881622816908.9280324-UTR-L-elsbetiae_contig8253:4456..4788Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8253 4457..4788 +
1691683904.3740196-UTR-L-elsbetiae_contig8253:4456..47881691683904.3740196-UTR-L-elsbetiae_contig8253:4456..4788Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8253 4457..4788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.9131498-CDS-L-elsbetiae_contig8253:4018..44561622816908.9131498-CDS-L-elsbetiae_contig8253:4018..4456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8253 4019..4456 +
1691683904.3613353-CDS-L-elsbetiae_contig8253:4018..44561691683904.3613353-CDS-L-elsbetiae_contig8253:4018..4456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8253 4019..4456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8253.17257.1

>prot_L-elsbetiae_contig8253.17257.1 ID=prot_L-elsbetiae_contig8253.17257.1|Name=mRNA_L-elsbetiae_contig8253.17257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
MFLRLRELNCEKQLHPFQIFVTIRQQSVVFREVLCSRSPFTGAMDISLFQ
PSWCGTSTSHLPKNTCSPVHVRPVYLKETAPKSRYPLAAPLPAAIPGPST
DHNAPPCARNRAGCLLRGTAPLLPGATGGPRVYGNKTMHISAYIA*
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mRNA from alignment at L-elsbetiae_contig8253:3949..4788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8253.17257.1 ID=mRNA_L-elsbetiae_contig8253.17257.1|Name=mRNA_L-elsbetiae_contig8253.17257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig8253:3949..4788+ (Laminarionema elsbetiae ELsaHSoW15)
CCCACGTGAATAATCGGCCGAGCGAGAGACGACACATACCTTCCTCCACT
GTGACCACGGGCCCTCAAGGATGTTTTTGAGACTAAGAGAGCTCAATTGT
GAGAAACAACTGCATCCCTTCCAGATATTCGTCACCATCAGACAGCAATC
AGTTGTGTTTCGAGAGGTGTTATGTTCAAGATCACCATTTACAGGGGCCA
TGGACATCAGTTTGTTCCAACCGTCTTGGTGTGGAACGAGTACATCACAT
TTACCCAAAAACACTTGCTCCCCCGTACACGTACGACCGGTTTACTTGAA
GGAAACTGCCCCCAAATCCCGCTACCCGCTAGCCGCCCCGCTACCCGCAG
CCATTCCGGGACCTTCCACAGACCACAACGCCCCCCCCTGCGCGCGAAAC
CGCGCTGGGTGCTTGTTGCGAGGCACGGCACCCCTCCTCCCCGGCGCTAC
AGGAGGTCCGCGAGTTTACGGCAACAAAACCATGCATATATCAGCGTATA
TCGCGTGACGAACTCTACACCCCCCCCCCTTGAACGCAGGACTGCTCGCA
GCCCGACCGACGCACGTACGTATAAAACCCAAGAGACCTCAGCGGACCCG
GCCAGTTAGCCTCTAGCCCCTCCCCCGTCAAATGTCCCCTATCTGGTCGC
CCGACCCTACTTTCCTTCGGAAGAGCCGCCGGGCGCCGCCGGAGTCGGCA
GCAGCGGCCTCGCGGGCTGCGCGCCCAAGCGGTGCGGGTCCATGGAAGCG
TAGTAAGGAGCCGGAGGGGGGCCCGGGGGCGGCCCCGGCGGGGGACGCCT
CCCGCCGCCGCCGTACATCGGCCCCCCGCCGCTGCCCCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8253:3949..4788+

>mRNA_L-elsbetiae_contig8253.17257.1 ID=mRNA_L-elsbetiae_contig8253.17257.1|Name=mRNA_L-elsbetiae_contig8253.17257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig8253:3949..4788+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTTGAGACTAAGAGAGCTCAATTGTGAGAAACAACTGCATCCCTT
CCAGATATTCGTCACCATCAGACAGCAATCAGTTGTGTTTCGAGAGGTGT
TATGTTCAAGATCACCATTTACAGGGGCCATGGACATCAGTTTGTTCCAA
CCGTCTTGGTGTGGAACGAGTACATCACATTTACCCAAAAACACTTGCTC
CCCCGTACACGTACGACCGGTTTACTTGAAGGAAACTGCCCCCAAATCCC
GCTACCCGCTAGCCGCCCCGCTACCCGCAGCCATTCCGGGACCTTCCACA
GACCACAACGCCCCCCCCTGCGCGCGAAACCGCGCTGGGTGCTTGTTGCG
AGGCACGGCACCCCTCCTCCCCGGCGCTACAGGAGGTCCGCGAGTTTACG
GCAACAAAACCATGCATATATCAGCGTATATCGCGTGAATGTTTTTGAGA
CTAAGAGAGCTCAATTGTGAGAAACAACTGCATCCCTTCCAGATATTCGT
CACCATCAGACAGCAATCAGTTGTGTTTCGAGAGGTGTTATGTTCAAGAT
CACCATTTACAGGGGCCATGGACATCAGTTTGTTCCAACCGTCTTGGTGT
GGAACGAGTACATCACATTTACCCAAAAACACTTGCTCCCCCGTACACGT
ACGACCGGTTTACTTGAAGGAAACTGCCCCCAAATCCCGCTACCCGCTAG
CCGCCCCGCTACCCGCAGCCATTCCGGGACCTTCCACAGACCACAACGCC
CCCCCCTGCGCGCGAAACCGCGCTGGGTGCTTGTTGCGAGGCACGGCACC
CCTCCTCCCCGGCGCTACAGGAGGTCCGCGAGTTTACGGCAACAAAACCA
TGCATATATCAGCGTATATCGCGTGA
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