mRNA_L-elsbetiae_contig8245.17252.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8245.17252.1
Unique NamemRNA_L-elsbetiae_contig8245.17252.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8245.17252.1 vs. uniprot
Match: A0A6H5KI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI16_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.390e-24
Identity = 63/138 (45.65%), Postives = 80/138 (57.97%), Query Frame = 2 
Query:  125 LLGWHVGAIQQFLKSNQPEQRGSTRRSTPLSNAEVELGKVGMHFNESYVAVTGTDGGPKPFWGALRYTDIREPQVAQSKGQSSAGSSYGEASPDSPESKRGEPDGGGTIDGELGRGLSPFPDVVVEGGEGGDEMGVQQ 538
            ++GW +GAIQQFL S +P++ GSTRR T LS     L  VGMHF E+YVAVTG +GG  P WG  ++ DI EP+        +   S  +  P SPES+RGE    G I+GELG    P     V G EG D M  ++
Sbjct:    1 MVGWRLGAIQQFLGSVEPKELGSTRRQTNLSRPLQLLASVGMHFKENYVAVTGGEGGVCPPWGGSKHADIGEPRERGEPRPDNFQKSTRDDRPASPESERGEFSADGMIEGELG---VPRKSSSVVGVEGDDWMETEE 135
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BLAST of mRNA_L-elsbetiae_contig8245.17252.1 vs. uniprot
Match: A0A6H5KLM7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 7.400e-24
Identity = 56/114 (49.12%), Postives = 71/114 (62.28%), Query Frame = 2 
Query:  125 LLGWHVGAIQQFLKSNQPEQRGSTRRSTPLSNAEVELGKVGMHFNESYVAVTGTDGGPKPFWGALRYTDIREPQVAQSKGQSSAGSSYGEASPDSPESKRGEPDGGGTIDGELG 466
            ++GW +GAIQQFL S +P++ GSTRR T LS     L  VGMHF E+YVAVTG +GG  P WG  ++ DI EP+        +   S  +  P SPES+RGE    G I+GELG
Sbjct:    1 MVGWRLGAIQQFLGSVEPKELGSTRRQTNLSRPLQLLASVGMHFKENYVAVTGGEGGVCPPWGGSKHADIGEPRERGEPRPDNFQKSTRDDRPASPESERGEFSADGMIEGELG 114
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BLAST of mRNA_L-elsbetiae_contig8245.17252.1 vs. uniprot
Match: A0A6H5J8W1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W1_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 6.330e-22
Identity = 63/138 (45.65%), Postives = 80/138 (57.97%), Query Frame = 2 
Query:  125 LLGWHVGAIQQFLKSNQPEQRGSTRRSTPLSNAEVELGKVGMHFNESYVAVTGTDGGPKPFWGALRYTDIREPQVAQSKGQSSAGSSYGEASPDSPESKRGEPDGGGTIDGELGRGLSPFPDVVVEGGEGGDEMGVQQ 538
            ++GW +GAIQQFL S +P++ GSTRR T LS     L  VGMHF E+YVAVTG +GG  P WG  ++ DI EP+        +   S  +  P SPES+RGE    G I+GELG    P     V G EG D M  ++
Sbjct:    1 MVGWRLGAIQQFLGSVEPKELGSTRRQTNLSRPLQLLASVGMHFKENYVAVTGGEGGVCPPWGGSKHADIGEPRERGEPRPDNFQKSTRDDRPASPESERGEFSADGMIEGELG---VPRKSSSVVGVEGDDWMETEE 135
[Close]
BLAST of mRNA_L-elsbetiae_contig8245.17252.1 vs. uniprot
Match: A0A6H5J804_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J804_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.370e-21
Identity = 62/138 (44.93%), Postives = 79/138 (57.25%), Query Frame = 2 
Query:  125 LLGWHVGAIQQFLKSNQPEQRGSTRRSTPLSNAEVELGKVGMHFNESYVAVTGTDGGPKPFWGALRYTDIREPQVAQSKGQSSAGSSYGEASPDSPESKRGEPDGGGTIDGELGRGLSPFPDVVVEGGEGGDEMGVQQ 538
            ++GW +GAIQQFL S +P++ GSTRR T LS     L  VGM F E+YVAVTG +GG  P WG  ++ DI EP+        +   S  +  P SPES+RGE    G I+GELG    P     V G EG D M  ++
Sbjct:    1 MVGWRLGAIQQFLGSVEPKELGSTRRQTNLSRPLQLLASVGMDFKENYVAVTGGEGGVSPPWGGSKHADIGEPRERGEPRPDNFQKSTRDDRPASPESERGEFSADGMIEGELG---VPRKSSSVVGAEGDDWMETEE 135
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8245.17252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KI16_9PHAE1.390e-2445.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLM7_9PHAE7.400e-2449.12Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J8W1_9PHAE6.330e-2245.65Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J804_9PHAE1.370e-2144.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8245contigL-elsbetiae_contig8245:6653..7211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.974334-UTR-L-elsbetiae_contig8245:6652..68991622816907.974334-UTR-L-elsbetiae_contig8245:6652..6899Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8245 6653..6899 +
1691683903.6168869-UTR-L-elsbetiae_contig8245:6652..68991691683903.6168869-UTR-L-elsbetiae_contig8245:6652..6899Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8245 6653..6899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.9872797-CDS-L-elsbetiae_contig8245:6899..72111622816907.9872797-CDS-L-elsbetiae_contig8245:6899..7211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8245 6900..7211 +
1691683903.6274981-CDS-L-elsbetiae_contig8245:6899..72111691683903.6274981-CDS-L-elsbetiae_contig8245:6899..7211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8245 6900..7211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8245.17252.1prot_L-elsbetiae_contig8245.17252.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8245 6900..7211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8245.17252.1

>prot_L-elsbetiae_contig8245.17252.1 ID=prot_L-elsbetiae_contig8245.17252.1|Name=mRNA_L-elsbetiae_contig8245.17252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MHFNESYVAVTGTDGGPKPFWGALRYTDIREPQVAQSKGQSSAGSSYGEA
SPDSPESKRGEPDGGGTIDGELGRGLSPFPDVVVEGGEGGDEMGVQQDAD
DMKD
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mRNA from alignment at L-elsbetiae_contig8245:6653..7211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8245.17252.1 ID=mRNA_L-elsbetiae_contig8245.17252.1|Name=mRNA_L-elsbetiae_contig8245.17252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=559bp|location=Sequence derived from alignment at L-elsbetiae_contig8245:6653..7211+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCACATGAGCAAAGAGCCTACAACGGCTCAACAACCTTTCTTTGAGTT
ATGTCGAACTCGAACGAGGGTTGAGGTCAATTGAACCGTCTGAGGGTTGG
CTAAAGCACGGCAGCGTCGAAGTGCTACTTGGATGGCATGTTGGCGCCAT
TCAACAGTTCCTAAAATCGAACCAGCCCGAACAGCGTGGCAGCACGAGGC
GCAGCACACCTCTGTCTAATGCTGAAGTGGAGTTAGGGAAGGTGGGGATG
CACTTCAATGAAAGTTATGTCGCCGTCACTGGGACGGACGGGGGCCCTAA
GCCCTTTTGGGGAGCGTTGAGATACACTGACATACGTGAGCCCCAGGTCG
CTCAGAGCAAAGGCCAAAGCAGTGCCGGGTCATCCTATGGGGAAGCAAGT
CCTGACTCCCCCGAGAGCAAGAGAGGGGAACCTGACGGTGGTGGTACTAT
AGACGGCGAGTTGGGTAGGGGTCTGAGCCCATTTCCTGATGTTGTCGTAG
AGGGTGGCGAGGGTGGCGACGAGATGGGTGTGCAGCAGGATGCGGACGAC
ATGAAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8245:6653..7211+

>mRNA_L-elsbetiae_contig8245.17252.1 ID=mRNA_L-elsbetiae_contig8245.17252.1|Name=mRNA_L-elsbetiae_contig8245.17252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig8245:6653..7211+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACTTCAATGAAAGTTATGTCGCCGTCACTGGGACGGACGGGGGCCC
TAAGCCCTTTTGGGGAGCGTTGAGATACACTGACATACGTGAGCCCCAGG
TCGCTCAGAGCAAAGGCCAAAGCAGTGCCGGGTCATCCTATGGGGAAGCA
AGTCCTGACTCCCCCGAGAGCAAGAGAGGGGAACCTGACGGTGGTGGTAC
TATAGACGGCGAGTTGGGTAGGGGTCTGAGCCCATTTCCTGATGTTGTCG
TAGAGGGTGGCGAGGGTGGCGACGAGATGGGTGTGCAGCAGGATGCGGAC
GACATGAAGGACATGCACTTCAATGAAAGTTATGTCGCCGTCACTGGGAC
GGACGGGGGCCCTAAGCCCTTTTGGGGAGCGTTGAGATACACTGACATAC
GTGAGCCCCAGGTCGCTCAGAGCAAAGGCCAAAGCAGTGCCGGGTCATCC
TATGGGGAAGCAAGTCCTGACTCCCCCGAGAGCAAGAGAGGGGAACCTGA
CGGTGGTGGTACTATAGACGGCGAGTTGGGTAGGGGTCTGAGCCCATTTC
CTGATGTTGTCGTAGAGGGTGGCGAGGGTGGCGACGAGATGGGTGTGCAG
CAGGATGCGGACGACATGAAGGAC
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