mRNA_L-elsbetiae_contig8233.17238.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8233.17238.1
Unique NamemRNA_L-elsbetiae_contig8233.17238.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8233.17238.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 1.100e-70
Identity = 172/374 (45.99%), Postives = 219/374 (58.56%), Query Frame = 1
Query:    1 LISASMGCSRIVKILLDKGADTLVTGDEGVTALHMSAGKGHLDATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NPDCRLPADGETALCAAAFEGHLAAVRVLLRGKADAMLSRADDQG-TSFVPLDIAARNGHTGVVNELVQQRSIEACGGPSGGVQALRLAAQMEYLDIVQILSIAGVVDTGVVLMVAAGKGYLAIVKLLLQRQQKKGRSTTRIRAYVNNACGFYGAPPLIHAIGFAGCCS--PKIARLLVDAGADTSSSIRITNTMGFVAFNDTPLTLAEAYLSTKKVGGGRDATEEQLNRLEAIRRLLLQVEAVHAVSWLWPNNAP---RSAAASPTP----MALMLPILRRRASR 1086
            +++   G SRI K+L+ KGA+  +    G TALH    +   DA                               XXXXXXXXXXX  NPDC+LP DG TAL  AA EG +A +R LLRG A+ +L +    G T+ VPLD+AA++GHT VV EL+Q+  IE C   S G  AL  AA  ++LDI+ IL+ AGVVDTG  L +AAG G+ A VK LL+ + K+G       AY+N A    G  PL+  +   GC S  P+I R+LVDAGADT+S +++ N  G V FNDTPL   +  L  K V  G+ AT+E L RLEAI RLLL+V+AVHAVSWLWP+ AP   R+    P P    + LMLPIL+RR  R
Sbjct:  144 MMAVHNGHSRIAKMLIKKGANVSIADKRGFTALHFCCAREEDDAIVKLLAKAGADLDAIIPGEGSAPLHRATHHEXXXXXXXXXXXXXNPDCQLP-DGSTALHIAAEEGQVAVMRELLRGNANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVE-GAYLN-ARDVNGYTPLV--VCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEPPLPALKLMLPILKRRTKR 512          
BLAST of mRNA_L-elsbetiae_contig8233.17238.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 7.660e-57
Identity = 190/383 (49.61%), Postives = 238/383 (62.14%), Query Frame = 1
Query:    1 LISASMGCSRIVKILLDKGADTLVTGDEGVTALHMSAGKGHLDATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPDCRLPADGETALCAAAFEGHLAAVRVLLRGKADAMLSRADDQGTSFVPLDIAARNGHTGVVNELVQQRSIEACGGPSGGVQALRLAAQMEYLDIVQILSIAGVVDTGVVLMVAAGKGYLAIVKLLLQRQQKKGRSTTRIRAYVNNACGFYGAPPLIHAIGFAGCCS----PKIARLLVDAGADTSSSIRITNTMGFVAFNDTPLTLAEAYLSTKKVGGGRDATEEQLNRLEAIRRLLLQVEAVHAVSWLWPNNA------PRSAA-------ASPTPMALMLPILRRRASRHHLV 1098
            + +ASMG S ++ ILL KGA+  +  D GVTALH+          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN D R P DGET L  A  EG L A R LLR  A+ +++RA     + +PLD AARNG+  V+ EL+Q+  IE CGG S G  AL +A +   +  + +L+ AGVVDTG  L ++AG G  A VK LLQ   K       +     N     G  PL+ +I   G       P++ARLLV+AGADT++ +R TN+MG V F+ TPL L    L  KKV G    ++++L RLE IRRLLLQVEAVHA SWLWP+++      P +AA       A+   +  +LPILRRRA R  +V
Sbjct:   39 IFAASMGHSSVLGILLSKGANVSIVTDTGVTALHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVDIRTPVDGETPLFRAMTEGQLEATRELLRANANPLITRAPLP--TLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQNHAKHYGPGAYVNVRDRN-----GTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTY-ISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVV 413          
BLAST of mRNA_L-elsbetiae_contig8233.17238.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 8.170e-55
Identity = 136/293 (46.42%), Postives = 183/293 (62.46%), Query Frame = 1
Query:  280 ADGETALCAAAFEGHLAAVRVLLRGKADAMLSRADD-QGTSFVPLDIAARNGHTGVVNELVQQRSIEACGGPSGGVQALRLAAQMEYLDIVQILSIAGVVDTGVVLMVAAGKGYLAIVKLLLQRQQKKGRSTTRIRAYVNNACGFYGAPPLIHAIGFAGCCSPKIARLLVDAGADTSSSIRITNTMGFVAFNDTPLTLAEAYLSTK-KVGGGRDATEEQLNRLEAIRRLLLQVEAVHAVSWLWPNNAP---RSAA-------ASPTPMALMLPILRRRASRHHLVVMPAVFRW 1122
            +DG T L  AA++G++ A R+LL  KAD +L+   D  G +F+PLD AA NGH  VVNEL++Q  I+ CGG SGGV+AL+ AAQ + L+I+ IL+ AGVVDTG+ L+VAAG G    +K LL+  Q + R T    AYVN      G  PL+  I       P++ RLLV+AGADT+S + + N +G    + TPL L    +  K KV G   A+ EQL++LEAIRRLLL+VEAVHAVSWLWP++     R+AA       A  T + L + + RRRA R   V + A+ R+
Sbjct:  146 SDGATPLYTAAWKGNVDAARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLE--QARARKTMDEAAYVNTR-DRGGVTPLLWGIQHY---RPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRA-RGRKVPLAALLRY 431          
BLAST of mRNA_L-elsbetiae_contig8233.17238.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 8.620e-55
Identity = 125/250 (50.00%), Postives = 160/250 (64.00%), Query Frame = 1
Query:  280 ADGETALCAAAFEGHLAAVRVLLRGKADAMLSRADDQGTS-FVPLDIAARNGHTGVVNELVQQRSIEACGGPSGGVQALRLAAQMEYLDIVQILSIAGVVDTGVVLMVAAGKGYLAIVKLLLQRQQKKGRSTTRIRAYVNNACGFYGAPPLIHAIGFAGCCSPKIARLLVDAGADTSSSIRITNTMGFVAFNDTPLTLAEAYLSTKKVGGGRDA---TEEQLNRLEAIRRLLLQVEAVHAVSWLWPNNAP 1017
            +DG T L  AA+ G++ AV +LL  KAD +L+ A D G   F+PLD+AA+NGH  VVNEL++Q  I+ CGG SGG  ALR AA    LDI+ IL+ AGVVDTG+ L+VAAG G  A +K LL+  Q +GR +T   AY+N   G  G   L+  I     C P++ +LLV+AGADT+S + I N  G   F+ TPL L    L      GGR A   T E+ N+LE IRRLLL+ EAVHAVSWLWP++ P
Sbjct:  146 SDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLE--QARGRKSTDRAAYMNTLNGV-GLTSLLDGIQR---CRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLL------GGRSAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTP 383          
BLAST of mRNA_L-elsbetiae_contig8233.17238.1 vs. uniprot
Match: A0A6H5KEI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI1_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 9.840e-49
Identity = 121/291 (41.58%), Postives = 169/291 (58.08%), Query Frame = 1
Query:  292 TALCAAAFEGHLAAVRVLLRGKADAMLSRADD-QGTSFVPLDIAARNGHTGVVNELVQQRSIEACGGPSGGV-QALRLAAQMEYLDIVQILSIAGVVD-TGVVLMVAAGKGYLAIVKLLLQRQQKKGRSTTRIRAYVNNACGFYGAPPLIHAIGFAGC--CSPKIARLLVDAGADTSSSIRITNTMGFVAFNDTPLTLAEAYLSTKKVGGGRDATEEQLNRLEAIRRLLLQVEAVHAVSWLWPN---------NAPRSAAASPTPMALMLPILRRRASRHHLVVMPAVFRW 1122
            T L  AA +GHL AV+VLL  KA+ +L+R+ +  G SFVPL++AA+ G + VV EL+++  I  CGGPSG +  ALR+AA    +DI+ I+  AGVVD  G+ L+ A G G  A V  LL++QQ++ +++     YVN AC   G   L+ + G      C+P+I R LVDAGADT+S++++         N TPL                    E +N  EA RR+LLQ  AVHAVSW+WP+         N+PR+   SPTP++ ML +LRRRA R    +   +FRW
Sbjct:   14 TPLYIAAMQGHLGAVKVLLHAKANPLLTRSSECSGRSFVPLEVAAQTGRSAVVRELLREFGIRCCGGPSGRLLDALRVAAVYGQVDIMSIIMGAGVVDPVGLALLAAVGSGKEAAVGFLLRQQQERWQTS-----YVNTACDDDGLTALLWSFGGNNNKPCNPRITRRLVDAGADTTSTVQLRAERSRTRVNMTPL--------------------EYVN--EATRRVLLQAVAVHAVSWMWPSDDPVLARPANSPRTTKHSPTPLSTMLTVLRRRA-RTRASLWDTLFRW 276          
BLAST of mRNA_L-elsbetiae_contig8233.17238.1 vs. uniprot
Match: A0A6H5K037_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K037_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 4.040e-48
Identity = 113/255 (44.31%), Postives = 151/255 (59.22%), Query Frame = 1
Query:  391 GTSFVPLDIAARNGHTGVVNELVQQRSIEACGGPSGGVQALRLAAQMEYLDIVQILSIAGVVDTGVVLMVAAGKGYLAIVKLLLQRQQKKGRSTTRIRAYVNNACGFYGAPPLIHAIGFAGCCSPKIARLLVDAGADTSSSIRITNTMGFVAFNDTPLTLAEAYLSTKKVGGGRDATEEQLNRLEAIRRLLLQVEAVHAVSWLWPNNAPRSAAA--------SPT---PMALMLP-ILRRRASRHHLVVMPAVFR 1119
            G +FVPLD+A ++GH+ VV EL  Q  +  CGG SGGV++LRLA   + +DI+ IL++ GVVDTG  L+VAA       VK LLQ Q   G        YVNN    +G  PL+  I   G  SP+IAR L+DA ADT S++ +T +  +    DTPL  A   L   KVG  ++ATEEQL  L+AI RLL QV+AVHAVSWLW ++  R++ A         PT   P+   +P +LR    +  +VV+ AV+R
Sbjct:  168 GATFVPLDVAVQHGHSEVVRELTHQLGVRGCGGVSGGVESLRLATTEQDVDIMGILTVGGVVDTGRALVVAAENSREESVKFLLQHQAGGGAW------YVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDAEADTKSTVLVTKSGQWTTSRDTPLGFATHSLRQNKVGR-KNATEEQLRSLKAIHRLLSQVDAVHAVSWLWRSSDTRNSYAVGAASSRMKPTIAGPLLKRMPTVLRTTVGKRGVVVLRAVYR 415          
BLAST of mRNA_L-elsbetiae_contig8233.17238.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 4.620e-48
Identity = 113/266 (42.48%), Postives = 165/266 (62.03%), Query Frame = 1
Query:  346 LRGKADAMLS-RADDQGTSFVPLDIAARNGHTGVVNELVQQRSIEACGGPSGGVQALRLAAQMEYLDIVQILSIAGVVD-TGVVLMVAAGKGYLAIVKLLLQRQQKKGRSTTRIRAYVNNACGFYGAPPLIHAIGFAGC----CSPKIARLLVDAGADTSSSIRITNTMGFVAFNDTPLTLAEAYLSTKKVGGGRDATEEQLNRLEAIRRLLLQVEAVHAVSWLWPN---------NAPRSAAASPTPMALMLPILRRRASRHHLV 1098
            L  KA+ +L+  ++  G SFVPL++AA+ G + VV+EL+++  I  CGGPSGG+ ALR+AA    +DI+ +L  AGVVD  G+ L+ A G G  A V  LL++Q+++ +++     YVN A    G   L+ +  F G     C+P+I R LVDAGADT+S++++         N TPL     + + ++  G   AT+EQL RLEA RR+LL+V AVHAVSW+WP+         N+PR+A  SPT +  +LP+LRRRA R  L+
Sbjct:  138 LHAKANPLLTWSSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTS-----YVNIARDDDGLTALLWS--FRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDW-ALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRTAKHSPTQLTTVLPVLRRRAGRRALL 395          
BLAST of mRNA_L-elsbetiae_contig8233.17238.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 2.120e-46
Identity = 115/260 (44.23%), Postives = 153/260 (58.85%), Query Frame = 1
Query:  349 RGKADAMLSRADDQGTSFVPLDIAARNGHTGVVNELVQQRSIEACGGPSGGVQALRLAAQMEYLDIVQILSIAGVVDTGVVLMVAAGKGYLAIVKLLLQRQQKKGRSTTRIRAYVNNACGFYGAPPLIHAI--GFAGCCSPKIARLLVDAGADTSSSIRITNTMGFVAFNDTPLTLAEAYLSTKKVGGGRDATEEQLNRLEAIRRLLLQVEAVHAVSWLWPNNAPR--------------SAAASPTPMALMLPILRRRA 1080
            R KA+ +L+R +      +PLD AA+NG  GVV EL+Q+  I  CGG +GGV AL+LAA   ++D++  L+ AGVVDTG+ L+ A   G++ +VK LLQ+Q     + +   AYV+      G  PLI  I  G    CSPK+ RLLVDAGADT+S +R T   G +    TPL+LA   L  K +   +   +E L RLE IRRLLL+VEAVHA SWLW N  PR              S++ +   +  +LPILRRRA
Sbjct:  168 RAKANPLLTRVN-LAWQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNG---TPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIK-IAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRA 422          
BLAST of mRNA_L-elsbetiae_contig8233.17238.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 7.260e-45
Identity = 115/278 (41.37%), Postives = 159/278 (57.19%), Query Frame = 1
Query:  340 VLLRGKADAMLSRADDQGTSFVPLDIAARNGHTGVVNELVQQRSIEACGGPSGGVQALRLAAQMEYLDIVQILSIAG-VVDTGVVLMVAAGKGYLAIVKLLLQRQQKKGRSTTRIRAYVNNACGFYGAPPLIHAI--GFAGCCSPKIARLLVDAGADTSSSIRITN-TMGFVAFNDTPLTLAEAYLSTKKVGGGRDATEEQLNRLEAIRRLLLQVEAVHAVSWLWPNNAP-------------RSAAASPTPMALMLPILRRRASRHHLVVMPAVFRW 1122
            VLLR KA+ +L      G S+VPL++AA +G+  V  E+++Q  I  CGGPSGGV+ALR AA  E+L+ + +L  AG VVDTG  L++AA  G    VK LL+R+Q          AYVN     YG  P++ A+  G    CSPKI RLLVDAGA+T+ ++ +T  T  +   ++TPL      L   +V G   AT+EQL RL+  R LL + EAVHAVSWLW +  P              ++ A  TP+  M P+LRR+      V++  +FR+
Sbjct:  163 VLLRAKANPLLCSHTPMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADAD------AYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDG-EAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRG-VLLKTLFRY 432          
BLAST of mRNA_L-elsbetiae_contig8233.17238.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.170e-43
Identity = 96/196 (48.98%), Postives = 124/196 (63.27%), Query Frame = 1
Query:  424 RNGHTGVVNELVQQRSIEACGGPSGGVQALRLAAQMEYLDIVQILSIAGVVDTGVVLMVAAGKGYLAIVKLLLQRQQKKGRSTTRIRAYVNNACGFYGAPPLIHAIGFAGCCSPKIARLLVDAGADTSSSIRITNTMGFVAFNDTPLTLAEAYLSTKKVGGGRDATEEQLNRLEAIRRLLLQVEAVHAVSWLWPNN 1011
            ++GH+ VV EL+QQ  +  CGG S GV++LRLAA  +Y+DI+ IL++ GVVDTG  L+VAA       VK LLQ Q   G        YVNN    +G  PL+  I   G  SP+IAR L+D GADT S++ +T +  +    DTPL  A   L   KVGG ++ATEEQL  L+AI RLL Q+EAVHAVSWLW ++
Sbjct:  189 QHGHSEVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQHQAGGGTW------YVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGG-KNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSS 377          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8233.17238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT11_ECTSI1.100e-7045.99EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LJF9_ECTSI7.660e-5749.61EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KJA9_9PHAE8.170e-5546.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQV0_9PHAE8.620e-5550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEI1_9PHAE9.840e-4941.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K037_9PHAE4.040e-4844.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVU3_ECTSI4.620e-4842.48EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FVK3_ECTSI2.120e-4644.23EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1H7_ECTSI7.260e-4541.37EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D7G1U9_ECTSI2.170e-4348.98EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8233contigL-elsbetiae_contig8233:701..1861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.0
Seed ortholog evalue5.6e-62
Seed eggNOG ortholog2880.D7FT11
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1122
Cds size1107
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8233.17238.1prot_L-elsbetiae_contig8233.17238.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8233 701..1846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.943941-CDS-L-elsbetiae_contig8233:700..8021622816906.943941-CDS-L-elsbetiae_contig8233:700..802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8233 701..802 -
1691683902.874166-CDS-L-elsbetiae_contig8233:700..8021691683902.874166-CDS-L-elsbetiae_contig8233:700..802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8233 701..802 -
1622816906.958598-CDS-L-elsbetiae_contig8233:841..18461622816906.958598-CDS-L-elsbetiae_contig8233:841..1846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8233 842..1846 -
1691683902.8860674-CDS-L-elsbetiae_contig8233:841..18461691683902.8860674-CDS-L-elsbetiae_contig8233:841..1846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8233 842..1846 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.9684153-UTR-L-elsbetiae_contig8233:1846..18611622816906.9684153-UTR-L-elsbetiae_contig8233:1846..1861Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8233 1847..1861 -
1691683902.8964155-UTR-L-elsbetiae_contig8233:1846..18611691683902.8964155-UTR-L-elsbetiae_contig8233:1846..1861Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8233 1847..1861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8233.17238.1

>prot_L-elsbetiae_contig8233.17238.1 ID=prot_L-elsbetiae_contig8233.17238.1|Name=mRNA_L-elsbetiae_contig8233.17238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=369bp
MGCSRIVKILLDKGADTLVTGDEGVTALHMSAGKGHLDATKMLVGAGAPI
DALTSTGLTPLHASARRGHWEVMTALVKAGANPDCRLPADGETALCAAAF
EGHLAAVRVLLRGKADAMLSRADDQGTSFVPLDIAARNGHTGVVNELVQQ
RSIEACGGPSGGVQALRLAAQMEYLDIVQILSIAGVVDTGVVLMVAAGKG
YLAIVKLLLQRQQKKGRSTTRIRAYVNNACGFYGAPPLIHAIGFAGCCSP
KIARLLVDAGADTSSSIRITNTMGFVAFNDTPLTLAEAYLSTKKVGGGRD
ATEEQLNRLEAIRRLLLQVEAVHAVSWLWPNNAPRSAAASPTPMALMLPI
LRRRASRHHLVVMPAVFRW
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mRNA from alignment at L-elsbetiae_contig8233:701..1861-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8233.17238.1 ID=mRNA_L-elsbetiae_contig8233.17238.1|Name=mRNA_L-elsbetiae_contig8233.17238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1161bp|location=Sequence derived from alignment at L-elsbetiae_contig8233:701..1861- (Laminarionema elsbetiae ELsaHSoW15)
CTTATTTCCGCCAGTATGGGTTGCTCCCGTATTGTCAAGATTCTCCTGGA CAAGGGAGCAGACACATTGGTAACAGGCGATGAGGGGGTCACCGCACTCC ACATGTCCGCCGGCAAAGGACACCTGGATGCGACCAAGATGCTGGTCGGG GCCGGTGCTCCCATCGATGCGCTGACAAGTACAGGCCTGACACCACTTCA CGCTAGTGCAAGGAGAGGGCACTGGGAGGTGATGACGGCGCTGGTCAAGG CAGGCGCGAATCCCGACTGCCGATTGCCCGCCGACGGAGAGACTGCGTTG TGCGCTGCGGCTTTTGAAGGGCACCTGGCGGCTGTAAGGGTGCTCCTTCG CGGAAAAGCTGATGCGATGTTATCGAGGGCAGACGATCAGGGGACAAGTT TCGTGCCCTTGGACATAGCGGCCCGTAACGGGCACACGGGCGTGGTAAAC GAGCTAGTACAGCAGCGAAGCATCGAAGCGTGTGGCGGACCAAGCGGCGG CGTGCAAGCCCTCCGTCTTGCCGCCCAGATGGAGTATCTCGACATCGTAC AAATCTTGTCGATTGCCGGAGTGGTCGACACGGGCGTTGTTCTAATGGTT GCCGCCGGGAAAGGTTATCTGGCAATTGTCAAGCTCTTATTGCAGCGGCA ACAGAAGAAGGGGCGGTCGACTACCCGCATACGTGCTTACGTGAACAACG CCTGTGGTTTTTACGGTGCGCCGCCCTTGATCCACGCCATTGGATTTGCC GGCTGCTGTTCCCCCAAGATCGCGCGGCTTCTAGTTGATGCCGGAGCGGA CACGTCCTCGAGTATTCGAATCACGAACACGATGGGGTTCGTGGCATTCA ACGATACGCCCCTGACCTTGGCGGAGGCGTACCTTAGCACCAAGAAAGTC GGAGGAGGAAGAGACGCCACCGAGGAGCAGCTGAACAGGCTCGAGGCCAT CCGCCGCTTGCTGCTGCAGGTAGAGGCAGTCCATGCGGTCTCTTGGCTGT GGCCCAACAACGCCCCCCGCGTTGCCTGCGCGGCAGAGAATAGATCGAAC ACGGTGCAGAGCGCAGCGGCGTCTCCCACGCCGATGGCGTTGATGCTGCC GATCCTGAGGCGGAGAGCTTCAAGGCATCATCTTGTTGTGATGCCGGCTG TTTTCAGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8233:701..1861-

>mRNA_L-elsbetiae_contig8233.17238.1 ID=mRNA_L-elsbetiae_contig8233.17238.1|Name=mRNA_L-elsbetiae_contig8233.17238.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2214bp|location=Sequence derived from alignment at L-elsbetiae_contig8233:701..1861- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTTGCTCCCGTATTGTCAAGATTCTCCTGGACAAGGGAGCAGACAC
ATTGGTAACAGGCGATGAGGGGGTCACCGCACTCCACATGTCCGCCGGCA
AAGGACACCTGGATGCGACCAAGATGCTGGTCGGGGCCGGTGCTCCCATC
GATGCGCTGACAAGTACAGGCCTGACACCACTTCACGCTAGTGCAAGGAG
AGGGCACTGGGAGGTGATGACGGCGCTGGTCAAGGCAGGCGCGAATCCCG
ACTGCCGATTGCCCGCCGACGGAGAGACTGCGTTGTGCGCTGCGGCTTTT
GAAGGGCACCTGGCGGCTGTAAGGGTGCTCCTTCGCGGAAAAGCTGATGC
GATGTTATCGAGGGCAGACGATCAGGGGACAAGTTTCGTGCCCTTGGACA
TAGCGGCCCGTAACGGGCACACGGGCGTGGTAAACGAGCTAGTACAGCAG
CGAAGCATCGAAGCGTGTGGCGGACCAAGCGGCGGCGTGCAAGCCCTCCG
TCTTGCCGCCCAGATGGAGTATCTCGACATCGTACAAATCTTGTCGATTG
CCGGAGTGGTCGACACGGGCGTTGTTCTAATGGTTGCCGCCGGGAAAGGT
TATCTGGCAATTGTCAAGCTCTTATTGCAGCGGCAACAGAAGAAGGGGCG
GTCGACTACCCGCATACGTGCTTACGTGAACAACGCCTGTGGTTTTTACG
GTGCGCCGCCCTTGATCCACGCCATTGGATTTGCCGGCTGCTGTTCCCCC
AAGATCGCGCGGCTTCTAGTTGATGCCGGAGCGGACACGTCCTCGAGTAT
TCGAATCACGAACACGATGGGGTTCGTGGCATTCAACGATACGCCCCTGA
CCTTGGCGGAGGCGTACCTTAGCACCAAGAAAGTCGGAGGAGGAAGAGAC
GCCACCGAGGAGCAGCTGAACAGGCTCGAGGCCATCCGCCGCTTGCTGCT
GCAGGTAGAGGCAGTCCATGCGGTCTCTTGGCTGTGGCCCAACAACGCCC
CCCGCATGGGTTGCTCCCGTATTGTCAAGATTCTCCTGGACAAGGGAGCA
GACACATTGGTAACAGGCGATGAGGGGGTCACCGCACTCCACATGTCCGC
CGGCAAAGGACACCTGGATGCGACCAAGATGCTGGTCGGGGCCGGTGCTC
CCATCGATGCGCTGACAAGTACAGGCCTGACACCACTTCACGCTAGTGCA
AGGAGAGGGCACTGGGAGGTGATGACGGCGCTGGTCAAGGCAGGCGCGAA
TCCCGACTGCCGATTGCCCGCCGACGGAGAGACTGCGTTGTGCGCTGCGG
CTTTTGAAGGGCACCTGGCGGCTGTAAGGGTGCTCCTTCGCGGAAAAGCT
GATGCGATGTTATCGAGGGCAGACGATCAGGGGACAAGTTTCGTGCCCTT
GGACATAGCGGCCCGTAACGGGCACACGGGCGTGGTAAACGAGCTAGTAC
AGCAGCGAAGCATCGAAGCGTGTGGCGGACCAAGCGGCGGCGTGCAAGCC
CTCCGTCTTGCCGCCCAGATGGAGTATCTCGACATCGTACAAATCTTGTC
GATTGCCGGAGTGGTCGACACGGGCGTTGTTCTAATGGTTGCCGCCGGGA
AAGGTTATCTGGCAATTGTCAAGCTCTTATTGCAGCGGCAACAGAAGAAG
GGGCGGTCGACTACCCGCATACGTGCTTACGTGAACAACGCCTGTGGTTT
TTACGGTGCGCCGCCCTTGATCCACGCCATTGGATTTGCCGGCTGCTGTT
CCCCCAAGATCGCGCGGCTTCTAGTTGATGCCGGAGCGGACACGTCCTCG
AGTATTCGAATCACGAACACGATGGGGTTCGTGGCATTCAACGATACGCC
CCTGACCTTGGCGGAGGCGTACCTTAGCACCAAGAAAGTCGGAGGAGGAA
GAGACGCCACCGAGGAGCAGCTGAACAGGCTCGAGGCCATCCGCCGCTTG
CTGCTGCAGGTAGAGGCAGTCCATGCGGTCTCTTGGCTGTGGCCCAACAA
CGCCCCCCGCAGCGCAGCGGCGTCTCCCACGCCGATGGCGTTGATGCTGC
CGATCCTGAGGCGGAGAGCTTCAAGGCATCATCTTGTTGTGATGCCGGCT
GTTTTCAGGTGGAGCGCAGCGGCGTCTCCCACGCCGATGGCGTTGATGCT
GCCGATCCTGAGGCGGAGAGCTTCAAGGCATCATCTTGTTGTGATGCCGG
CTGTTTTCAGGTGG
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