mRNA_L-elsbetiae_contig8231.17237.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8231.17237.1
Unique NamemRNA_L-elsbetiae_contig8231.17237.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8231.17237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8231contigL-elsbetiae_contig8231:6162..6834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size673
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8231.17237.1prot_L-elsbetiae_contig8231.17237.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8231 6428..6820 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.8807933-UTR-L-elsbetiae_contig8231:6161..64271622816906.8807933-UTR-L-elsbetiae_contig8231:6161..6427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8231 6162..6427 +
1691683902.8404083-UTR-L-elsbetiae_contig8231:6161..64271691683902.8404083-UTR-L-elsbetiae_contig8231:6161..6427Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8231 6162..6427 +
1622816906.9058623-UTR-L-elsbetiae_contig8231:6820..68341622816906.9058623-UTR-L-elsbetiae_contig8231:6820..6834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8231 6821..6834 +
1691683902.8640525-UTR-L-elsbetiae_contig8231:6820..68341691683902.8640525-UTR-L-elsbetiae_contig8231:6820..6834Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8231 6821..6834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.894201-CDS-L-elsbetiae_contig8231:6427..68201622816906.894201-CDS-L-elsbetiae_contig8231:6427..6820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8231 6428..6820 +
1691683902.8521287-CDS-L-elsbetiae_contig8231:6427..68201691683902.8521287-CDS-L-elsbetiae_contig8231:6427..6820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8231 6428..6820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8231.17237.1

>prot_L-elsbetiae_contig8231.17237.1 ID=prot_L-elsbetiae_contig8231.17237.1|Name=mRNA_L-elsbetiae_contig8231.17237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MMRDEQLRSAHVCDMAEKLMQQDASVFWGLGRPGGRVRTFKLSSSIYLGH
GSAPPFLVSCMSCVARSVYVCYILYSTSNGLLVVLLYRYARGDMNGGTLW
TVGPGEGGRSDVVALRAQETRTGRGETFFV*
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mRNA from alignment at L-elsbetiae_contig8231:6162..6834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8231.17237.1 ID=mRNA_L-elsbetiae_contig8231.17237.1|Name=mRNA_L-elsbetiae_contig8231.17237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=673bp|location=Sequence derived from alignment at L-elsbetiae_contig8231:6162..6834+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTTTGCTTCAATGCTCGCGGCGGCACAGTAGCATGTTGTCGTAAGGC
ATCTATCTACTGCATATGTTGCCGGGGGGGGGGGGCATCTGGCGATCGGT
GCAGAGCAATCATGTCCCCCTGCTCGGCTGTGGCTGCATACCTGTGCACG
TGTGAATGGAAACATTTAGGTTTGCCACTCAGCTATGAATGAGCGTGTGA
CGAGGAAGTGTTGATTTCGTGGTAGGGGCTTCACTGTGTGAGACGTGGCA
AAAGGGTTGCATAGATATGATGCGTGATGAGCAGCTCAGAAGTGCACACG
TTTGTGACATGGCGGAAAAACTGATGCAACAGGACGCCAGCGTATTTTGG
GGATTGGGAAGACCGGGCGGGCGTGTGCGAACCTTTAAACTTTCCAGCAG
TATTTATTTAGGTCACGGCTCGGCGCCTCCCTTCTTGGTCTCGTGCATGT
CGTGTGTTGCGCGATCTGTGTATGTATGCTACATACTATATAGTACGTCT
AATGGTCTGTTGGTTGTGCTGCTGTATCGGTACGCGCGTGGTGACATGAA
TGGTGGTACTCTATGGACAGTGGGACCGGGGGAGGGGGGTAGAAGCGATG
TCGTTGCCCTGCGCGCGCAGGAAACTCGAACCGGGCGTGGCGAAACGTTT
TTTGTGTGAAAGAAAAAGTGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8231:6162..6834+

>mRNA_L-elsbetiae_contig8231.17237.1 ID=mRNA_L-elsbetiae_contig8231.17237.1|Name=mRNA_L-elsbetiae_contig8231.17237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig8231:6162..6834+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCGTGATGAGCAGCTCAGAAGTGCACACGTTTGTGACATGGCGGA
AAAACTGATGCAACAGGACGCCAGCGTATTTTGGGGATTGGGAAGACCGG
GCGGGCGTGTGCGAACCTTTAAACTTTCCAGCAGTATTTATTTAGGTCAC
GGCTCGGCGCCTCCCTTCTTGGTCTCGTGCATGTCGTGTGTTGCGCGATC
TGTGTATGTATGCTACATACTATATAGTACGTCTAATGGTCTGTTGGTTG
TGCTGCTGTATCGGTACGCGCGTGGTGACATGAATGGTGGTACTCTATGG
ACAGTGGGACCGGGGGAGGGGGGTAGAAGCGATGTCGTTGCCCTGCGCGC
GCAGGAAACTCGAACCGGGCGTGGCGAAACGTTTTTTGTGTGAATGATGC
GTGATGAGCAGCTCAGAAGTGCACACGTTTGTGACATGGCGGAAAAACTG
ATGCAACAGGACGCCAGCGTATTTTGGGGATTGGGAAGACCGGGCGGGCG
TGTGCGAACCTTTAAACTTTCCAGCAGTATTTATTTAGGTCACGGCTCGG
CGCCTCCCTTCTTGGTCTCGTGCATGTCGTGTGTTGCGCGATCTGTGTAT
GTATGCTACATACTATATAGTACGTCTAATGGTCTGTTGGTTGTGCTGCT
GTATCGGTACGCGCGTGGTGACATGAATGGTGGTACTCTATGGACAGTGG
GACCGGGGGAGGGGGGTAGAAGCGATGTCGTTGCCCTGCGCGCGCAGGAA
ACTCGAACCGGGCGTGGCGAAACGTTTTTTGTGTGA
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