mRNA_L-elsbetiae_contig8231.17236.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8231.17236.1
Unique NamemRNA_L-elsbetiae_contig8231.17236.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8231.17236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8231contigL-elsbetiae_contig8231:3918..4322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.841942-CDS-L-elsbetiae_contig8231:3917..42321622816906.841942-CDS-L-elsbetiae_contig8231:3917..4232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8231 3918..4232 +
1691683902.814618-CDS-L-elsbetiae_contig8231:3917..42321691683902.814618-CDS-L-elsbetiae_contig8231:3917..4232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8231 3918..4232 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.852894-UTR-L-elsbetiae_contig8231:4232..43221622816906.852894-UTR-L-elsbetiae_contig8231:4232..4322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8231 4233..4322 +
1691683902.8288043-UTR-L-elsbetiae_contig8231:4232..43221691683902.8288043-UTR-L-elsbetiae_contig8231:4232..4322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8231 4233..4322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8231.17236.1prot_L-elsbetiae_contig8231.17236.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8231 3918..4232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8231.17236.1

>prot_L-elsbetiae_contig8231.17236.1 ID=prot_L-elsbetiae_contig8231.17236.1|Name=mRNA_L-elsbetiae_contig8231.17236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
RPLSASTPTAAALAAPDGCTRLGATWQPLRPRPRRRRRRCRPLSASTPAA
AAVVVEWRWRWRWGWRWRWRPLSRLAPVRPAGWGRRPLCLGCCCRRRPPP
GRWR*
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mRNA from alignment at L-elsbetiae_contig8231:3918..4322+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8231.17236.1 ID=mRNA_L-elsbetiae_contig8231.17236.1|Name=mRNA_L-elsbetiae_contig8231.17236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=405bp|location=Sequence derived from alignment at L-elsbetiae_contig8231:3918..4322+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCCCTTGTCTGCATCAACACCGACGGCGGCGGCGCTGGCGGCGCCGGA
CGGCTGCACTCGCCTCGGTGCGACTTGGCAGCCCCTTCGCCCTCGCCCTC
GCCGTCGCCGTCGCCGTTGCCGTCCCTTGTCTGCATCAACACCGGCGGCG
GCGGCGGTAGTTGTGGAATGGAGATGGAGATGGAGATGGGGATGGCGATG
GCGATGGCGACCCCTTTCGCGCCTGGCACCGGTACGGCCAGCGGGCTGGG
GTCGTCGACCTCTGTGCCTCGGCTGCTGCTGCCGCCGCAGGCCGCCGCCC
GGCCGCTGGAGATGATGGAGGAGAGGGTTTTAGGCGGAGGCGGCGGCGGC
GGCGACGGCGACTTTTTCTCGCTTTCCTTCGACGGATTGTTCTAGGATTT
TTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8231:3918..4322+

>mRNA_L-elsbetiae_contig8231.17236.1 ID=mRNA_L-elsbetiae_contig8231.17236.1|Name=mRNA_L-elsbetiae_contig8231.17236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig8231:3918..4322+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCCCTTGTCTGCATCAACACCGACGGCGGCGGCGCTGGCGGCGCCGGA
CGGCTGCACTCGCCTCGGTGCGACTTGGCAGCCCCTTCGCCCTCGCCCTC
GCCGTCGCCGTCGCCGTTGCCGTCCCTTGTCTGCATCAACACCGGCGGCG
GCGGCGGTAGTTGTGGAATGGAGATGGAGATGGAGATGGGGATGGCGATG
GCGATGGCGACCCCTTTCGCGCCTGGCACCGGTACGGCCAGCGGGCTGGG
GTCGTCGACCTCTGTGCCTCGGCTGCTGCTGCCGCCGCAGGCCGCCGCCC
GGCCGCTGGAGATGACGTCCCTTGTCTGCATCAACACCGACGGCGGCGGC
GCTGGCGGCGCCGGACGGCTGCACTCGCCTCGGTGCGACTTGGCAGCCCC
TTCGCCCTCGCCCTCGCCGTCGCCGTCGCCGTTGCCGTCCCTTGTCTGCA
TCAACACCGGCGGCGGCGGCGGTAGTTGTGGAATGGAGATGGAGATGGAG
ATGGGGATGGCGATGGCGATGGCGACCCCTTTCGCGCCTGGCACCGGTAC
GGCCAGCGGGCTGGGGTCGTCGACCTCTGTGCCTCGGCTGCTGCTGCCGC
CGCAGGCCGCCGCCCGGCCGCTGGAGATGA
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