mRNA_L-elsbetiae_contig8231.17235.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8231.17235.1 vs. uniprot
Match: D8LJL9_ECTSI (PAS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL9_ECTSI) HSP 1 Score: 146 bits (369), Expect = 1.570e-38 Identity = 77/139 (55.40%), Postives = 99/139 (71.22%), Query Frame = 2 Query: 38 RERNCFHSRKSRERKKALLEELKKKVDELAPYRMLVEEAHDLVSAHSGDTGATFTYASGGFARLLGVDPKQLLRRSLLELVAPKDAQGVLRCILAALRHGGIRQVQYHMLPPAGAHAADVETSFRLVNGRLLAVTRVRG 454 RE+N HSR+SR+RKKA LE LK+ +L PYRMLVE+AHD++S HS D A F ASG F R LG +P ++L SLL+LV KD Q V++ I+ L GGI+QVQY M PP+ A +VETSFR+ + RLLA+TR+ G Sbjct: 362 REKNRDHSRRSRQRKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSADADAFFALASGAFYRQLGFEPTKMLGASLLDLVETKDVQAVVQAIMDTLSRGGIKQVQYRMRPPSDGDAVEVETSFRMASRRLLAITRIVG 500
BLAST of mRNA_L-elsbetiae_contig8231.17235.1 vs. uniprot
Match: A0A6H5KYK0_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK0_9PHAE) HSP 1 Score: 142 bits (359), Expect = 5.720e-37 Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 2 Query: 38 RERNCFHSRKSRERKKALLEELKKKVDELAPYRMLVEEAHDLVSAHSGDTGATFTYASGGFARLLGVDPKQLLRRSLLELVAPKDAQGVLRCILAALRHGGIRQ----------VQYHMLPPAGAHAADVETSFRLVNGRLLAVTRVRG 454 RE+N HSR+SRERKKA LE LK+ +L PYRMLVE+AHD++S HS D A F ASG F R LG +P ++L SLL+LV PKD Q V++ I+ L GGI+Q VQY M PP+ A +VETSFR+ + RLLA+TR+ G Sbjct: 400 REKNRDHSRRSRERKKAQLEGLKQASIDLGPYRMLVEQAHDMISVHSADADAFFALASGAFYRQLGFEPTKMLGTSLLDLVEPKDVQAVVQAIMDTLSRGGIKQASFMHSVPKLVQYRMRPPSDGDAVEVETSFRMASRRLLAITRIVG 548
BLAST of mRNA_L-elsbetiae_contig8231.17235.1 vs. uniprot
Match: A0A6H5KZ44_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ44_9PHAE) HSP 1 Score: 106 bits (265), Expect = 8.530e-25 Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 2 Query: 44 RNCFHSRKSRERKKALLEELKKKVDELAPYRMLVEEAHDLVSAHSGDTGATFTYASGGFARLLGVDPKQLLRRSLLELVAPKDAQGVLRCILAALRHGGIRQVQYHMLPPAGAHAADVETSFRLVNGRLLAVTRVRGRSLA 466 RN HSR+SR+RKKAL+E +K +V EL YRMLVE+AHDL+SAH+ D F YAS F R LG+ + LL L+ LV P DA V + AL + QV + L VE+SFR+V +L+A+TRV G +A Sbjct: 187 RNRDHSRRSRQRKKALVEGMKNQVTELGAYRMLVEQAHDLISAHTTDDRTVFLYASNAFQRALGIRTEDLLGVQLIHLVHPDDAGRVTEALRRALLCNQVTQVVVYRLRHQ-QQEFTVESSFRVVPTKLVAITRVGGPGVA 326
BLAST of mRNA_L-elsbetiae_contig8231.17235.1 vs. uniprot
Match: D7G032_ECTSI (Multi-sensor hybrid histidine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G032_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 2.610e-19 Identity = 53/122 (43.44%), Postives = 71/122 (58.20%), Query Frame = 2 Query: 101 LKKKVDELAPYRMLVEEAHDLVSAHSGDTGATFTYASGGFARLLGVDPKQLLRRSLLELVAPKDAQGVLRCILAALRHGGIRQVQYHMLPPAGAHAADVETSFRLVNGRLLAVTRVRGRSLA 466 +K +V EL YRMLVE+AHDL+SAH+ D F YAS F R+LG+ + LL L+ LV P DA V + AL + QV + L VE+SFR+V +L+A+TRV G +A Sbjct: 1 MKNQVTELGAYRMLVEQAHDLISAHTTDDRTVFLYASNAFQRVLGISTEDLLGVQLIHLVHPDDAGRVTEALPPALLCNQVTQVVVYRLRHQ-QQEFTVESSFRVVPTKLVAITRVGGPGVA 121
BLAST of mRNA_L-elsbetiae_contig8231.17235.1 vs. uniprot
Match: UPI00071D4FBB (PAS domain S-box protein n=1 Tax=Gorillibacterium timonense TaxID=1689269 RepID=UPI00071D4FBB) HSP 1 Score: 58.2 bits (139), Expect = 6.050e-7 Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 2 Query: 131 YRMLVEEAHDLVSAHSGDTGATFTYASGGFARLLGVDPKQLLRRSLLELVAPKDAQGVLRCILAALRHGGIRQVQYHMLPPAGAHAADVETSFRLVNG 424 YR+L E A DL+S HS + GA F YAS LLG P++L+ L LV P+D VL + L G R + Y G++ +ETS R V G Sbjct: 263 YRLLSENAQDLISRHSMEEGAPFLYASPASLPLLGYSPEELIGVPSLSLVHPEDLPRVLSHMNNNLVTQGRRSIMYRFRRKDGSYIW-LETSSRFVFG 359
BLAST of mRNA_L-elsbetiae_contig8231.17235.1 vs. uniprot
Match: UPI00048059A7 (PAS domain-containing protein n=1 Tax=Deinococcus pimensis TaxID=309888 RepID=UPI00048059A7) HSP 1 Score: 56.6 bits (135), Expect = 2.000e-6 Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 2 Query: 131 YRMLVEEAHDLVSAHSGDTGATFTYASGGFARLLGVDPKQLLRRSLLELVAPKDAQGVLRCILAAL 328 +R+L E+A DLV+ H+ D T+ YAS F R+LG P L+ RS +L+ P+D + V R +++AL Sbjct: 130 FRLLAEQASDLVARHAPD--GTYLYASPSFERVLGYAPADLVGRSPFDLIEPEDREEVTRAVMSAL 193
BLAST of mRNA_L-elsbetiae_contig8231.17235.1 vs. uniprot
Match: A0A7X6SEA9_9BACT (PAS domain S-box protein (Fragment) n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A7X6SEA9_9BACT) HSP 1 Score: 55.8 bits (133), Expect = 3.600e-6 Identity = 22/62 (35.48%), Postives = 40/62 (64.52%), Query Frame = 2 Query: 131 YRMLVEEAHDLVSAHSGDTGATFTYASGGFARLLGVDPKQLLRRSLLELVAPKDAQGVLRCI 316 YR++ E DL+S H+ D A++TY S R+ G +P++LL +S + + P+D +G+L+ + Sbjct: 473 YRLITETTSDLISLHTFDLNASYTYVSPSIKRIAGYEPEELLGKSAFDFIHPEDRKGLLKIL 534
BLAST of mRNA_L-elsbetiae_contig8231.17235.1 vs. uniprot
Match: A0A7Z9E4K3_9CYAN (Putative two-component sensor histidine kinase n=2 Tax=Planktothrix TaxID=54304 RepID=A0A7Z9E4K3_9CYAN) HSP 1 Score: 53.5 bits (127), Expect = 2.520e-5 Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 2 Query: 125 APYRMLVEEAHDLVSAHSGDTGATFTYASGGFARLLGVDPKQLLRRSLLELVAPKDAQGVLRCILAALRHGGIRQVQYHM 364 A YR+L + A DL+S HS D T+ YAS +LLG +P+ L+ +SL EL+ P D + + L H I + Y + Sbjct: 494 ARYRLLADNATDLISRHSLD--GTYLYASPASRQLLGYEPEALIGQSLYELIHPDDLESAKQQYLLLPNHPEIYTISYRI 571 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8231.17235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8231.17235.1 >prot_L-elsbetiae_contig8231.17235.1 ID=prot_L-elsbetiae_contig8231.17235.1|Name=mRNA_L-elsbetiae_contig8231.17235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp VPPRPRGGEGEVPGEELLPLPKVSGAQEGPAGGAQEEGGRAGAVPHAGGGback to top mRNA from alignment at L-elsbetiae_contig8231:256..3740+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8231.17235.1 ID=mRNA_L-elsbetiae_contig8231.17235.1|Name=mRNA_L-elsbetiae_contig8231.17235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3485bp|location=Sequence derived from alignment at L-elsbetiae_contig8231:256..3740+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8231:256..3740+ >mRNA_L-elsbetiae_contig8231.17235.1 ID=mRNA_L-elsbetiae_contig8231.17235.1|Name=mRNA_L-elsbetiae_contig8231.17235.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig8231:256..3740+ (Laminarionema elsbetiae ELsaHSoW15)back to top |