mRNA_L-elsbetiae_contig823.17233.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig823.17233.1
Unique NamemRNA_L-elsbetiae_contig823.17233.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig823.17233.1 vs. uniprot
Match: D7FNM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM3_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.520e-36
Identity = 99/194 (51.03%), Postives = 128/194 (65.98%), Query Frame = 1 
Query:    1 RATAVSPRDDESREDEDVSLFLDSFSASKMARKYPTSASEAATGAESPPTMPLRGGGGTLNGQTREADAATIDNVQATLAISEPLGQIDLYSILARAPPAEIEKAVPHDPGWDGEESGDPTISKKAD-KKPRQERGSLGKLAS--IKGRGERRAFKTVGK-TPREELGGYVARDPLGEEVAELDAKAQESLRRI 570
            +A   SP+  +S E+EDVSLFLDSFSAS+M  ++P +A + A   +SPPT  L    G L GQ R+A+A   D  Q T+ +S+PL +IDLYSILA+APP        H P      S DPT+S KA  K+ ++E+GSL +LAS  + G  ER AF+T  +  PREE+GGY+ RDPLG+EVAEL AK QESLR I
Sbjct:  129 KANRPSPKHHDSGEEEDVSLFLDSFSASEMPGQHPAAAVQTAVTLQSPPTS-LCLDDGVLEGQARKAEAVVADTTQTTMEMSKPLAKIDLYSILAKAPPVAPRSTASHRPVDGIGCSVDPTMSNKAGMKRHKREQGSLRRLASSVVVGGDERPAFETALRLNPREEVGGYLKRDPLGDEVAELTAKLQESLRSI 321
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig823.17233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNM3_ECTSI1.520e-3651.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig823contigL-elsbetiae_contig823:23166..26378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1584
Cds size1584
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.6080208-CDS-L-elsbetiae_contig823:23165..232171622816906.6080208-CDS-L-elsbetiae_contig823:23165..23217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 23166..23217 -
1691683902.6446166-CDS-L-elsbetiae_contig823:23165..232171691683902.6446166-CDS-L-elsbetiae_contig823:23165..23217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 23166..23217 -
1622816906.6198797-CDS-L-elsbetiae_contig823:23406..234861622816906.6198797-CDS-L-elsbetiae_contig823:23406..23486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 23407..23486 -
1691683902.656-CDS-L-elsbetiae_contig823:23406..234861691683902.656-CDS-L-elsbetiae_contig823:23406..23486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 23407..23486 -
1622816906.6303258-CDS-L-elsbetiae_contig823:23750..238461622816906.6303258-CDS-L-elsbetiae_contig823:23750..23846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 23751..23846 -
1691683902.6664996-CDS-L-elsbetiae_contig823:23750..238461691683902.6664996-CDS-L-elsbetiae_contig823:23750..23846Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 23751..23846 -
1622816906.643887-CDS-L-elsbetiae_contig823:24077..244181622816906.643887-CDS-L-elsbetiae_contig823:24077..24418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 24078..24418 -
1691683902.6765382-CDS-L-elsbetiae_contig823:24077..244181691683902.6765382-CDS-L-elsbetiae_contig823:24077..24418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 24078..24418 -
1622816906.6572773-CDS-L-elsbetiae_contig823:24664..251131622816906.6572773-CDS-L-elsbetiae_contig823:24664..25113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 24665..25113 -
1691683902.6870859-CDS-L-elsbetiae_contig823:24664..251131691683902.6870859-CDS-L-elsbetiae_contig823:24664..25113Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 24665..25113 -
1622816906.6729605-CDS-L-elsbetiae_contig823:25457..257621622816906.6729605-CDS-L-elsbetiae_contig823:25457..25762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 25458..25762 -
1691683902.6992395-CDS-L-elsbetiae_contig823:25457..257621691683902.6992395-CDS-L-elsbetiae_contig823:25457..25762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 25458..25762 -
1622816906.685089-CDS-L-elsbetiae_contig823:26117..263781622816906.685089-CDS-L-elsbetiae_contig823:26117..26378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 26118..26378 -
1691683902.714427-CDS-L-elsbetiae_contig823:26117..263781691683902.714427-CDS-L-elsbetiae_contig823:26117..26378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig823 26118..26378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig823.17233.1prot_L-elsbetiae_contig823.17233.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig823 23166..26378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig823.17233.1

>prot_L-elsbetiae_contig823.17233.1 ID=prot_L-elsbetiae_contig823.17233.1|Name=mRNA_L-elsbetiae_contig823.17233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=528bp
RATAVSPRDDESREDEDVSLFLDSFSASKMARKYPTSASEAATGAESPPT
MPLRGGGGTLNGQTREADAATIDNVQATLAISEPLGQIDLYSILARAPPA
EIEKAVPHDPGWDGEESGDPTISKKADKKPRQERGSLGKLASIKGRGERR
AFKTVGKTPREELGGYVARDPLGEEVAELDAKAQESLRRIRNDAKRERPV
LTIDIGRHYAALFVEKPKPPNAIKQFVDGDRNDGNEDRGTNAAAAAAAAA
AAAAAIVNDDDDCPTYLAEDLSRENRAHGHIFSNANSRRRRRRRSGRNKE
SAITRVGPSSCGAENRGSWRSVAMHNYTGEKNHPHEVQHGTRQQQEHSPE
DIVESCSSDYGDESFELTDESEEGCLEVGIEDSIGRRDEPSSSGHGTMAE
ETSPEENTTTAAAALRIESCWRGFLGRCAAKCALRSVLLSALRNIGGGKL
AKVLTLADIEQEEKRGLNRALRVATLSRQQLPPQAHIAACVRFVETLQRR
RIRIVEARKNRWVTERRQRKKGEFCCG*
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mRNA from alignment at L-elsbetiae_contig823:23166..26378-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig823.17233.1 ID=mRNA_L-elsbetiae_contig823.17233.1|Name=mRNA_L-elsbetiae_contig823.17233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3213bp|location=Sequence derived from alignment at L-elsbetiae_contig823:23166..26378- (Laminarionema elsbetiae ELsaHSoW15)
CGCGCAACAGCAGTCAGTCCGAGGGACGACGAGTCAAGAGAGGACGAGGA
CGTCTCTTTATTCTTGGACTCGTTTTCTGCTTCCAAGATGGCGAGAAAGT
ATCCCACGTCGGCATCAGAGGCAGCTACTGGCGCTGAATCGCCACCCACG
ATGCCGCTGCGTGGGGGAGGGGGAACGCTCAACGGACAGACGCGTGAAGC
TGACGCTGCTACCATCGATAATGTACAAGCTACACTGGCGATAAGCGAGC
CGCTCGGACAGGTAAAAATGTCTGGACGGCAACGATAACAGCGTGAACAT
GTAAACGCTGCACAACAAAGTTGCTCGAGCATTTCGGACAAAAAGGGGCC
GTATTTACTGATTTTCTGTAGAAAGAGACAAAACGTTGTTAAACTATCAC
CTTAAGGTCGCTTTGACCGCCTCCCATCACTACTCGCCGCAATAAATACC
CACCTTGAGCATCGGCAAAAGAGAGAACGGAACAACAAACAGAAGGAACA
TGCGACAGGTGCTTTCCACCATGGTTCAAGAACGAACGGTAGGATGCACA
TGCCCTATAAAAATGAGTATTTACGGTGAGCACGCCTCCTTTTCTTTCGT
CGACCCTTGTTGTCAGATTGACCTGTACAGCATTCTTGCCAGAGCACCTC
CCGCTGAGATAGAGAAAGCAGTACCCCACGACCCGGGCTGGGATGGGGAG
GAGAGTGGTGATCCCACAATATCAAAGAAGGCTGACAAGAAGCCTAGGCA
AGAGAGAGGTTCCTTGGGAAAATTGGCGAGCATCAAAGGCAGAGGCGAGC
GGCGAGCGTTTAAAACGGTAGGAAAGACCCCACGAGAAGAACTGGGAGGC
TACGTGGCGAGGGATCCATTGGGAGAGGAGGTCGCCGAGTTGGACGCCAA
GGCTCAAGAAAGCCTTCGAAGGTGAGGAAACTGAATGTTGAGACGTCTGC
ATTTTATCGTGCCTTGGGGTGATGGTTGCATTTCTTTCTCTCCAGCTGGT
CTCGCTCAGAGGGTACCCATGATGTTGTACCTCACGAGCGACGTGTGTGG
CCGTGTGTGGTCTTCGTCTGGATGTCAGTGCAGCATCGAAATATTGCCCT
TTGCCAGGGTGGCAAAGTATCTTGGACGAATACTCTTGCCGATCGTGTCA
GTGACGAGTTAATTCAATCCTACGGGGTCACGCTACATGCATTCAAGCAA
AAAGGCGCAGCTGTGGGTGGCTAACTTCCGTCGCACCACATACTTACCCC
CCCTCGCCCCGAAAGGATCAGAAACGACGCCAAGAGAGAAAGGCCTGTCC
TGACCATTGACATCGGTCGCCACTACGCTGCACTCTTTGTCGAGAAGCCA
AAACCGCCGAACGCCATAAAACAATTCGTCGACGGTGATCGTAACGACGG
AAATGAAGATAGAGGAACAAACGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCAGCTATTGTGAATGATGACGATGACTGCCCGACCTACCTC
GCCGAAGATTTGAGCCGGGAAAACCGCGCACATGGTCATATTTTCAGCAA
CGCAAATAGCAGAAGAAGGAGAAGGAGAAGAAGTGGTAGAAACAAAGAGA
GCGCTATAACTCGGGTTGGTCCTTCGTCTTGTGGAGCAGAGAATCGGGGC
AGCTGGCGAAGTGTGGCCATGCACAACTATACGGGCGAGAAAAACCACCC
GCACGAGGTGCAACGTCTGGACAATAAAGGTAGCACAAAGGAAGAGAGCG
CAGTTGACCCGTCAACAAAAGGGGTTGTTTGGAGAGGTGTTAAGCAAGGA
GATCCACGCATGGCGATGGGGACAGAACAAGAATCCAGCAAAGACGACAG
GTTCGTCGCAGACGGCGGTTGGGCGGTGTGGGGCAAGAAGAGTGAAAGCA
TCGACGAGCAAGCGCAGCCGGGGTGGGTGAAGGTCGAATGTAACGGCTGC
ACGGGCGAAGATGGAACGCGGCAACAGCAAGAGCACTCGCCGGAAGACAT
TGTTGAGAGTTGTAGCAGCGACTACGGCGATGAATCGTTCGAACTGACAG
ATGAGTCGGAGGAGGGGTGTCTAGAGGTGGGTATCGAGGATAGCATTGGA
AGGCGAGATGAACCTTCTTCCTCGGGCCACGGAACGATGGCGGAGGAGAC
GTCTCCAGAAGAAAACACTACCACTGCTGCTGCTGCGCTGCGGATCGAGA
GTTGTTGGCGAGGGTTTCTTGGAAGATGCGCTGCTAAATGTGCGCTGCGA
TCTGTGCTGCTTTCCGCCCTGCGAAATATCGGGGGCGGGAAGCTTGCTAA
GGTGACAGACGCACCGTTCATGGAACAATCCATCCGGGGAACACACTACT
GTACAGTTTTCGCCATGTGCAGTGAATTCTCTACCCATCGCCTGCTATGT
AGGCCTGTGCAGAACCACTGTTGTTGCGGTGTTTACGCAAAAGGGCTTGT
TCGGTTGTGAGCCAGCCTCGTCCTATATGTATCGTTTGTTTCTGTTTTCC
TGTCCCATCGTAAAACCCTGTGAAAATGAAAGGTGCTGACGCTGGCGGAT
ATCGAACAAGAAGAGAAAAGAGGGCTTAACCGGGCGCTTCGAGTGGCCAC
TTTGTCTCGGCAACAACTCCCACCGCAGGTGAGTGATGGGCGTGACGCTC
AGGTATAAGTTGCGCCCGGGCGATGAATATGTCCTCAGTCGTTTCCTGCG
CCAAGTCTTTCTCCCTTTGGCGTGTGCTCGAAAAGCGCGGAACACATTTG
TCCGTACGAATTATTGTCACTTTTTTTCATGATACCGCCCGTCGTTTGAA
TCGCTCGCCCGCGGTGTATACGGAGTACGATTTACGCGTTCTTAACTTCC
TAACGTTGTCCCGGTTACGGCGTTCCTCGCGCGCTCCCAAAGGCACATAT
TGCGGCGTGTGTACGCTTCGTGGAAACATTGCAGAGGCGGCGCATACGCA
TCGTGGAAGCGAGGAAAAACAGGTGAATGGGAAGACTACTGCCAGATGAA
AGTCTCCATTTAGAAATCAATCCTTTGATTACAATAGTGTGGTACTACAC
GTAGTCTACTGTGGGTGGTTACAGACAAGAGTCATCCCTGCTGCACATTG
CCCCCACTCCCACCCCTGTCCCTGGCCGTCGCTCCGCCCTCGTGTTGGTT
TTACCCCCTAGGTGGGTAACTGAGAGACGTCAGCGGAAGAAGGGCGAGTT
TTGTTGTGGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig823:23166..26378-

>mRNA_L-elsbetiae_contig823.17233.1 ID=mRNA_L-elsbetiae_contig823.17233.1|Name=mRNA_L-elsbetiae_contig823.17233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3168bp|location=Sequence derived from alignment at L-elsbetiae_contig823:23166..26378- (Laminarionema elsbetiae ELsaHSoW15)
CGCGCAACAGCAGTCAGTCCGAGGGACGACGAGTCAAGAGAGGACGAGGA
CGTCTCTTTATTCTTGGACTCGTTTTCTGCTTCCAAGATGGCGAGAAAGT
ATCCCACGTCGGCATCAGAGGCAGCTACTGGCGCTGAATCGCCACCCACG
ATGCCGCTGCGTGGGGGAGGGGGAACGCTCAACGGACAGACGCGTGAAGC
TGACGCTGCTACCATCGATAATGTACAAGCTACACTGGCGATAAGCGAGC
CGCTCGGACAGCGCGCAACAGCAGTCAGTCCGAGGGACGACGAGTCAAGA
GAGGACGAGGACGTCTCTTTATTCTTGGACTCGTTTTCTGCTTCCAAGAT
GGCGAGAAAGTATCCCACGTCGGCATCAGAGGCAGCTACTGGCGCTGAAT
CGCCACCCACGATGCCGCTGCGTGGGGGAGGGGGAACGCTCAACGGACAG
ACGCGTGAAGCTGACGCTGCTACCATCGATAATGTACAAGCTACACTGGC
GATAAGCGAGCCGCTCGGACAGATTGACCTGTACAGCATTCTTGCCAGAG
CACCTCCCGCTGAGATAGAGAAAGCAGTACCCCACGACCCGGGCTGGGAT
GGGGAGGAGAGTGGTGATCCCACAATATCAAAGAAGGCTGACAAGAAGCC
TAGGCAAGAGAGAGGTTCCTTGGGAAAATTGGCGAGCATCAAAGGCAGAG
GCGAGCGGCGAGCGTTTAAAACGGTAGGAAAGACCCCACGAGAAGAACTG
GGAGGCTACGTGGCGAGGGATCCATTGGGAGAGGAGGTCGCCGAGTTGGA
CGCCAAGGCTCAAGAAAGCCTTCGAAGATTGACCTGTACAGCATTCTTGC
CAGAGCACCTCCCGCTGAGATAGAGAAAGCAGTACCCCACGACCCGGGCT
GGGATGGGGAGGAGAGTGGTGATCCCACAATATCAAAGAAGGCTGACAAG
AAGCCTAGGCAAGAGAGAGGTTCCTTGGGAAAATTGGCGAGCATCAAAGG
CAGAGGCGAGCGGCGAGCGTTTAAAACGGTAGGAAAGACCCCACGAGAAG
AACTGGGAGGCTACGTGGCGAGGGATCCATTGGGAGAGGAGGTCGCCGAG
TTGGACGCCAAGGCTCAAGAAAGCCTTCGAAGGATCAGAAACGACGCCAA
GAGAGAAAGGCCTGTCCTGACCATTGACATCGGTCGCCACTACGCTGCAC
TCTTTGTCGAGAAGCCAAAACCGCCGAACGCCATAAAACAATTCGTCGAC
GGTGATCGTAACGACGGAAATGAAGATAGAGGAACAAACGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCAGCTATTGTGAATGATGACGATG
ACTGCCCGACCTACCTCGCCGAAGATTTGAGCCGGGAAAACCGCGCACAT
GGTCATATTTTCAGCAACGCAAATAGCAGAAGAAGGAGAAGGAGAAGAAG
TGGTAGAAACAAAGAGAGCGCTATAACTCGGGTTGGTCCTTCGTCTTGTG
GAGCAGAGAATCGGGGCAGCTGGCGAAGTGTGGCCATGCACAACTATACG
GGCGAGAAAAACCACCCGCACGAGGTGCAACGATCAGAAACGACGCCAAG
AGAGAAAGGCCTGTCCTGACCATTGACATCGGTCGCCACTACGCTGCACT
CTTTGTCGAGAAGCCAAAACCGCCGAACGCCATAAAACAATTCGTCGACG
GTGATCGTAACGACGGAAATGAAGATAGAGGAACAAACGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCAGCTATTGTGAATGATGACGATGA
CTGCCCGACCTACCTCGCCGAAGATTTGAGCCGGGAAAACCGCGCACATG
GTCATATTTTCAGCAACGCAAATAGCAGAAGAAGGAGAAGGAGAAGAAGT
GGTAGAAACAAAGAGAGCGCTATAACTCGGGTTGGTCCTTCGTCTTGTGG
AGCAGAGAATCGGGGCAGCTGGCGAAGTGTGGCCATGCACAACTATACGG
GCGAGAAAAACCACCCGCACGAGGTGCAACATGGAACGCGGCAACAGCAA
GAGCACTCGCCGGAAGACATTGTTGAGAGTTGTAGCAGCGACTACGGCGA
TGAATCGTTCGAACTGACAGATGAGTCGGAGGAGGGGTGTCTAGAGGTGG
GTATCGAGGATAGCATTGGAAGGCGAGATGAACCTTCTTCCTCGGGCCAC
GGAACGATGGCGGAGGAGACGTCTCCAGAAGAAAACACTACCACTGCTGC
TGCTGCGCTGCGGATCGAGAGTTGTTGGCGAGGGTTTCTTGGAAGATGCG
CTGCTAAATGTGCGCTGCGATCTGTGCTGCTTTCCGCCCTGCGAAATATC
GGGGGCGGGAAGCTTGCTAAGATGGAACGCGGCAACAGCAAGAGCACTCG
CCGGAAGACATTGTTGAGAGTTGTAGCAGCGACTACGGCGATGAATCGTT
CGAACTGACAGATGAGTCGGAGGAGGGGTGTCTAGAGGTGGGTATCGAGG
ATAGCATTGGAAGGCGAGATGAACCTTCTTCCTCGGGCCACGGAACGATG
GCGGAGGAGACGTCTCCAGAAGAAAACACTACCACTGCTGCTGCTGCGCT
GCGGATCGAGAGTTGTTGGCGAGGGTTTCTTGGAAGATGCGCTGCTAAAT
GTGCGCTGCGATCTGTGCTGCTTTCCGCCCTGCGAAATATCGGGGGCGGG
AAGCTTGCTAAGGTGCTGACGCTGGCGGATATCGAACAAGAAGAGAAAAG
AGGGCTTAACCGGGCGCTTCGAGTGGCCACTTTGTCTCGGCAACAACTCC
CACCGCAGGTGCTGACGCTGGCGGATATCGAACAAGAAGAGAAAAGAGGG
CTTAACCGGGCGCTTCGAGTGGCCACTTTGTCTCGGCAACAACTCCCACC
GCAGGCACATATTGCGGCGTGTGTACGCTTCGTGGAAACATTGCAGAGGC
GGCGCATACGCATCGTGGAAGCGAGGAAAAACAGGCACATATTGCGGCGT
GTGTACGCTTCGTGGAAACATTGCAGAGGCGGCGCATACGCATCGTGGAA
GCGAGGAAAAACAGGTGGGTAACTGAGAGACGTCAGCGGAAGAAGGGCGA
GTTTTGTTGTGGGTAAGTGGGTAACTGAGAGACGTCAGCGGAAGAAGGGC
GAGTTTTGTTGTGGGTAA
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