mRNA_L-elsbetiae_contig8224.17229.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8224.17229.1
Unique NamemRNA_L-elsbetiae_contig8224.17229.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8224.17229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8224contigL-elsbetiae_contig8224:37..735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size699
Cds size357
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.3402102-UTR-L-elsbetiae_contig8224:36..3781622816906.3402102-UTR-L-elsbetiae_contig8224:36..378Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8224 37..378 +
1691683902.4797456-UTR-L-elsbetiae_contig8224:36..3781691683902.4797456-UTR-L-elsbetiae_contig8224:36..378Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8224 37..378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.352196-CDS-L-elsbetiae_contig8224:378..7351622816906.352196-CDS-L-elsbetiae_contig8224:378..735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8224 379..735 +
1691683902.490933-CDS-L-elsbetiae_contig8224:378..7351691683902.490933-CDS-L-elsbetiae_contig8224:378..735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8224 379..735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8224.17229.1prot_L-elsbetiae_contig8224.17229.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8224 379..735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8224.17229.1

>prot_L-elsbetiae_contig8224.17229.1 ID=prot_L-elsbetiae_contig8224.17229.1|Name=mRNA_L-elsbetiae_contig8224.17229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MPPVGNVCGENTRECVLREKWPKNGPKMRRIGGPKMRRVYAFRIGLFGSR
RTKTYKWILECCTSWAALQNDLGLDLDFPFGFFESWPVILTRGLDRYGRG
AQSCTICFFFFLTNYRQS*
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mRNA from alignment at L-elsbetiae_contig8224:37..735+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8224.17229.1 ID=mRNA_L-elsbetiae_contig8224.17229.1|Name=mRNA_L-elsbetiae_contig8224.17229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=699bp|location=Sequence derived from alignment at L-elsbetiae_contig8224:37..735+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCTGTACAGCAGTGAGAATATCTGTGGGGTTCGGGAGAGGGAGTTGTG
ATCTACAAGAAAAAGGACCACCACCGAGGTTGTTGGCAAGCGCCACGACA
CAGTCTCGATTTTCTTCTAATCGGCTCCGACGATTTCTACACTACTCGGC
CAGACGATGCGCGATAGGCTTAGCTACAGCACCAGCGGCTCGAGCATGTG
ATATCAAGCGCGCGCACAAGTACGTCCTGGTCGGACCGTGATTTTTGAAG
GTCCGCGGGCGTTTTCTCCCGGACCCGGCCTCGGCGAGAGGGGATATCGG
GGGGGCACAACCTTGGGGCCCATATGCGTTCACCGGCGAAAAATGCCGCC
CGTTGGTAACGTGTGCGGCGAGAACACGCGAGAATGCGTTTTGAGAGAAA
AGTGGCCTAAAAATGGGCCAAAAATGCGGCGGATTGGAGGGCCAAAAATG
CGGCGAGTTTACGCTTTTAGGATTGGACTGTTTGGTTCGAGAAGGACTAA
AACCTATAAATGGATTTTAGAATGTTGTACGAGCTGGGCTGCCCTTCAAA
ATGATCTGGGACTCGATCTCGATTTCCCATTCGGTTTTTTCGAGTCATGG
CCTGTAATTTTGACACGTGGTTTGGACCGCTATGGCCGAGGTGCACAAAG
CTGCACAATTTGTTTTTTTTTTTTTTTAACGAACTACCGGCAATCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8224:37..735+

>mRNA_L-elsbetiae_contig8224.17229.1 ID=mRNA_L-elsbetiae_contig8224.17229.1|Name=mRNA_L-elsbetiae_contig8224.17229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig8224:37..735+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCCGTTGGTAACGTGTGCGGCGAGAACACGCGAGAATGCGTTTT
GAGAGAAAAGTGGCCTAAAAATGGGCCAAAAATGCGGCGGATTGGAGGGC
CAAAAATGCGGCGAGTTTACGCTTTTAGGATTGGACTGTTTGGTTCGAGA
AGGACTAAAACCTATAAATGGATTTTAGAATGTTGTACGAGCTGGGCTGC
CCTTCAAAATGATCTGGGACTCGATCTCGATTTCCCATTCGGTTTTTTCG
AGTCATGGCCTGTAATTTTGACACGTGGTTTGGACCGCTATGGCCGAGGT
GCACAAAGCTGCACAATTTGTTTTTTTTTTTTTTTAACGAACTACCGGCA
ATCTTGAATGCCGCCCGTTGGTAACGTGTGCGGCGAGAACACGCGAGAAT
GCGTTTTGAGAGAAAAGTGGCCTAAAAATGGGCCAAAAATGCGGCGGATT
GGAGGGCCAAAAATGCGGCGAGTTTACGCTTTTAGGATTGGACTGTTTGG
TTCGAGAAGGACTAAAACCTATAAATGGATTTTAGAATGTTGTACGAGCT
GGGCTGCCCTTCAAAATGATCTGGGACTCGATCTCGATTTCCCATTCGGT
TTTTTCGAGTCATGGCCTGTAATTTTGACACGTGGTTTGGACCGCTATGG
CCGAGGTGCACAAAGCTGCACAATTTGTTTTTTTTTTTTTTTAACGAACT
ACCGGCAATCTTGA
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