mRNA_L-elsbetiae_contig822.17225.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig822.17225.1 vs. uniprot
Match: A0A6H5KWT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT1_9PHAE) HSP 1 Score: 359 bits (921), Expect = 3.990e-108 Identity = 256/501 (51.10%), Postives = 306/501 (61.08%), Query Frame = 3 Query: 864 GEPDKVVCLLAVGSKPQHPARAD-TGXXXXXXXXXXXXXXXXXXSLDDVIRMLTVEMGQNERELETEHVHSGQRAVSQVKALSRCDLRFGMVVLEVEDSLDAAAEIAGELRAANRSTPIVAVGGEHTLPTPAAT-PPLARKYFNEIVRLPADAARVRGLARRWLLQPPSCVAAVATSGMVGEPFGPDPTAWVTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSGAVSRGPVPGAEGGAPLVSWRYVCMRADVLGEPRASMPSPLSPSGAARDGEGLPPVTGRIFGGGVEDHASPCGLFGQDFERQNAEMEDREYDFVFRHGTILLRVEEDECGKTSAEVSSACEYATAHFGHITGRPLESFFEAPATNERTARKILEHIERSNTDSMCSYINLKSDVRYFTSSFVSVRSLSKRPERGPGP--GRERLPPWYVMLKVCLPCTIGLVKEPELLKAMYSTKA 2354 G PD VCLLAVG+K Q AD T XXXXXXXXX SLDDVI MLT E+ +N RE ETE V +G+RAV QV+AL+R +LR+G+V+LEVE S AA A EL+AAN STPI+AV + TPA + FNEI+ P AA VRGLA R+LL PP AA A+SGM GEP P+ TAA XXXXXXXXXXXXX +P G V+ + AE G L S + + PRA+M SP S S + + E L + R+FGG ED A PCGLFG++FE +NAE+EDREYDFVFRHGTIL+RVEE G+ V S CEYAT HFG +TG PL+ F ATN++TA KI+ HIERS++DSMC Y+NLKS VR +TSSFVS+RSLSKRPER P G ERLPPWYV+LKVCLP +GL+KEPELL+ +YS KA Sbjct: 192 GAPDHRVCLLAVGTKKQRLRGADGTVTVAXXXXXXXXXAMDSGASLDDVIGMLTAEINRNGREAETERVETGERAVLQVRALARSELRYGIVLLEVEGSRAAAIATARELKAANPSTPIIAVAYPRAMLTPAQLLSSEGWRDFNEILPFPVSAATVRGLATRYLLAPPGVAAAAASSGMAGEPISSGPS---TAAATFGQLGQHTAGSGSCCGGTLVPSLPVAGGSGEVPXXXXXXXXXXXXXGTGAAL-------------SPHG-VAWSLLRDAEEGVLLPSQPLLSVTNPCARRPRAAMTSPSSSSPSTLE-ETLASLKRRVFGGSEEDRALPCGLFGEEFEMKNAEIEDREYDFVFRHGTILVRVEEGLNGEVVPMVFSLCEYATDHFGDLTGLPLQWLFHEDATNKKTAAKIMMHIERSDSDSMCCYVNLKSKVRRWTSSFVSIRSLSKRPERAPEQRFGHERLPPWYVLLKVCLPSALGLIKEPELLQQLYSRKA 674
BLAST of mRNA_L-elsbetiae_contig822.17225.1 vs. uniprot
Match: D7FN90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN90_ECTSI) HSP 1 Score: 237 bits (605), Expect = 1.730e-68 Identity = 127/216 (58.80%), Postives = 152/216 (70.37%), Query Frame = 3 Query: 1761 MPSPLSPSGAARDGEGLPPVTGRIFGGGVEDHASPCGLFGQDFERQNAEMEDREYDFVFRHGTILLRVEEDECGKTSAEVSSACEYATAHFGHITGRPLESFFEAPATNERTARKILEHIERSNTDSMCSYINLKSDVRYFTSSFVSVRSLSKRPERGPGP--GRERLPPWYVMLKVCLPCTIGLVKEPELLKAMYSTKAEAKWIRDAPARAEEKV 2402 M SP S S A + E L + R+FGG ED CGLFG++FE +NAE+EDREYDFVFRHGTIL+RVEE G+ V S CEYAT HFG +TG PL+ F ATN++TA KI+ HIERS++DSMC Y+NLKS VR +TSSFVS+RSLS RPER G E LPPWYV+LKVCLP +GL+KEPELL+ +YS KA R AP + KV Sbjct: 1 MASPSSSSPATVE-ETLASLKRRVFGGSEEDRELSCGLFGEEFEMKNAEIEDREYDFVFRHGTILVRVEEGVGGEVVPMVFSLCEYATDHFGDLTGLPLQWLFHEDATNKKTAAKIMMHIERSDSDSMCCYVNLKSKVRRWTSSFVSIRSLSNRPERAHEQRVGHEHLPPWYVLLKVCLPSALGLIKEPELLQQLYSKKAAEASKRAAPQKGRGKV 215 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig822.17225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig822.17225.1 >prot_L-elsbetiae_contig822.17225.1 ID=prot_L-elsbetiae_contig822.17225.1|Name=mRNA_L-elsbetiae_contig822.17225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=779bp MLPSATSQAPAIFPPPGIPPSAMTAAAAARDEEHIFGVGADETFFSSIGAback to top mRNA from alignment at L-elsbetiae_contig822:10011..25876+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig822.17225.1 ID=mRNA_L-elsbetiae_contig822.17225.1|Name=mRNA_L-elsbetiae_contig822.17225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=15866bp|location=Sequence derived from alignment at L-elsbetiae_contig822:10011..25876+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig822:10011..25876+ >mRNA_L-elsbetiae_contig822.17225.1 ID=mRNA_L-elsbetiae_contig822.17225.1|Name=mRNA_L-elsbetiae_contig822.17225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4674bp|location=Sequence derived from alignment at L-elsbetiae_contig822:10011..25876+ (Laminarionema elsbetiae ELsaHSoW15)back to top |