mRNA_L-elsbetiae_contig822.17224.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig822.17224.1 vs. uniprot
Match: A0A6H5KVP2_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP2_9PHAE) HSP 1 Score: 325 bits (832), Expect = 9.290e-99 Identity = 162/184 (88.04%), Postives = 174/184 (94.57%), Query Frame = 2 Query: 8 AKYGAAQASMPRNFRLSLDGYVLQSDKDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVAEHVKPQDMPHLPGKRILGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTWFLDERASMMGVQTQIGDVLDQMDRMGSLCVDLQHQLSLSQMQVQGQNELVETLCRRLQHMELDYAALS 559 A YG+AQ+SMPRNFR+SLDGY L++D DGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAV+EH+K +DMPHLPGKR+LGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLT FLDERASMMGVQTQIG+VLDQMDRM SLCVDLQHQLSLSQMQVQGQNEL+E LCRRLQ +E D AALS Sbjct: 121 ASYGSAQSSMPRNFRISLDGYTLRADGDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLKTEDMPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTGFLDERASMMGVQTQIGEVLDQMDRMSSLCVDLQHQLSLSQMQVQGQNELIENLCRRLQQVEQDNAALS 304
BLAST of mRNA_L-elsbetiae_contig822.17224.1 vs. uniprot
Match: D7FN92_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN92_ECTSI) HSP 1 Score: 318 bits (814), Expect = 3.560e-97 Identity = 162/189 (85.71%), Postives = 175/189 (92.59%), Query Frame = 2 Query: 14 YGAAQASMPRNFRLSLDGYVLQSDKDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVAEHVKPQDMPHLPGKRILGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTWFLDERASMMGVQTQIGDVLDQMDRMGSLCVDLQHQLSLSQMQVQGQNELVETLCRRLQHMELDYAALSAAAAAAG 580 YGAAQ+ MPRNFR+SLDGY L++D DGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAV+EH+KP+D+PHLPGKR+LGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLT FLDERASMMGVQTQIG+VLDQMDRM SLCVDLQHQLSLSQMQVQGQNELVE LCRRLQ ++D A AAA + G Sbjct: 125 YGAAQSLMPRNFRISLDGYTLRTDGDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVSEHLKPEDVPHLPGKRLLGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTGFLDERASMMGVQTQIGEVLDQMDRMSSLCVDLQHQLSLSQMQVQGQNELVENLCRRLQ--QVDGGADQAAAYSFG 311
BLAST of mRNA_L-elsbetiae_contig822.17224.1 vs. uniprot
Match: A0A7R9P7P4_TIMCA ((California timema) hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9P7P4_TIMCA) HSP 1 Score: 66.2 bits (160), Expect = 1.040e-9 Identity = 33/98 (33.67%), Postives = 58/98 (59.18%), Query Frame = 2 Query: 83 DKDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVAEHVKPQDMPHLPGKRILGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTWF--LDER 370 + D K+ Y++ VT+ +W V RRY +F L+ ++ + V PQ LPGK++ G+++DPSF ++R L +++QL+ +P++ F LD R Sbjct: 27 EHDKKFTVYKVMVTSDSQSWFVFRRYNEFYKLYESLKKQV-PQLQLKLPGKKLFGNNLDPSFVQSRREGLDAFIQQLMTDHRLIHLPEVREFFQLDRR 123
BLAST of mRNA_L-elsbetiae_contig822.17224.1 vs. uniprot
Match: A0A7R9F6D3_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9F6D3_9NEOP) HSP 1 Score: 66.2 bits (160), Expect = 2.090e-9 Identity = 33/98 (33.67%), Postives = 58/98 (59.18%), Query Frame = 2 Query: 83 DKDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVAEHVKPQDMPHLPGKRILGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTWF--LDER 370 + D K+ Y++ VT+ +W V RRY +F L+ ++ + V PQ LPGK++ G+++DPSF ++R L +++QL+ +P++ F LD R Sbjct: 38 EHDKKFTVYKVMVTSDSQSWFVFRRYNEFYKLYESLKKQV-PQLQLKLPGKKLFGNNLDPSFVQSRREGLDAFIQQLMTDHRLIHLPEVREFFQLDRR 134
BLAST of mRNA_L-elsbetiae_contig822.17224.1 vs. uniprot
Match: A0A7R9K2T1_TIMGE (Hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9K2T1_TIMGE) HSP 1 Score: 64.3 bits (155), Expect = 1.800e-8 Identity = 28/78 (35.90%), Postives = 50/78 (64.10%), Query Frame = 2 Query: 83 DKDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVAEHVKPQDMPHLPGKRILGSSVDPSFAEARGLALQVYLRQLV 316 + D K+ Y++ VT+ +W V RRY +F L+ ++ + V PQ LPGK++ G+++DPSF ++R L +++QL+ Sbjct: 38 EHDKKFTVYKVMVTSDSQSWFVFRRYNEFYKLYESLKKQV-PQLQLKLPGKKLFGNNLDPSFVQSRREGLDAFIQQLM 114
BLAST of mRNA_L-elsbetiae_contig822.17224.1 vs. uniprot
Match: A0A7R9CUJ7_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9CUJ7_TIMCR) HSP 1 Score: 61.2 bits (147), Expect = 2.230e-7 Identity = 31/90 (34.44%), Postives = 54/90 (60.00%), Query Frame = 2 Query: 107 YRISVTAGLHTWLVLRRYRQFLSLHTAVAEHVKPQDMPHLPGKRILGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTWF--LDER 370 Y++ VT+ +W V RRY +F L+ ++ + V PQ LPGK++ G+++DPSF ++R L +++QL+ +P++ F LD R Sbjct: 119 YKVMVTSDSQSWFVFRRYNEFYKLYESLKKQV-PQLQLKLPGKKLFGNNLDPSFVQSRREGLDAFIQQLMTDHRLIHLPEVREFFQLDRR 207
BLAST of mRNA_L-elsbetiae_contig822.17224.1 vs. uniprot
Match: A0A7R9CWS3_TIMPO (Hypothetical protein n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9CWS3_TIMPO) HSP 1 Score: 55.1 bits (131), Expect = 9.960e-6 Identity = 25/66 (37.88%), Postives = 43/66 (65.15%), Query Frame = 2 Query: 119 VTAGLHTWLVLRRYRQFLSLHTAVAEHVKPQDMPHLPGKRILGSSVDPSFAEARGLALQVYLRQLV 316 VT+ +W V RRY +F L+ ++ + V PQ LPGK++ G+++DPSF ++R L +++QL+ Sbjct: 2 VTSDSQSWFVFRRYNEFYKLYESLKKQV-PQLQLKLPGKKLFGNNLDPSFVQSRREGLDAFIQQLM 66
BLAST of mRNA_L-elsbetiae_contig822.17224.1 vs. uniprot
Match: UPI001402B19F (sorting nexin-16-like n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402B19F) HSP 1 Score: 53.5 bits (127), Expect = 8.110e-5 Identity = 39/124 (31.45%), Postives = 57/124 (45.97%), Query Frame = 2 Query: 5 TAKYGAAQASMPRN----FRLSLDGYVLQSDKDGKYAAYRISVTAGLH-TWLVLRRYRQFLSLHTAVAEHVKPQDMPHLPGKRILGSSVDPSFAEARGLALQVYLRQLVCVSAAWRVPQLTWFL 361 +A+ G A P F ++ GY + ++ K+ Y++ V H +W+V RRY F+ LH + E P+ LP KR L + P F E R LQ YL + S A R + FL Sbjct: 109 SARGGQGPAQGPEGEVSPFTPTIVGYEVTEER-AKFTVYKVRVERNAHDSWIVFRRYADFVRLHDKLRESF-PELRMELPPKRWLRDNFHPGFLEVRQRGLQAYLYSVALNSRAARSAAVREFL 230
BLAST of mRNA_L-elsbetiae_contig822.17224.1 vs. uniprot
Match: UPI0009E198D4 (sorting nexin-4-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E198D4) HSP 1 Score: 53.5 bits (127), Expect = 9.870e-5 Identity = 32/100 (32.00%), Postives = 50/100 (50.00%), Query Frame = 2 Query: 20 AAQASMPRNFRLSLDGYVLQSDKDGKYAAYRISVTAGLHTWLVLRRYRQFLSLHTAVAEHVKPQDMPHLPGKRILGSSVDPSFAEARGLALQVYLRQLVC 319 A+ SMPR L L+ + ++ Y+I V G TW++ RRY F+ L+ + + + PQ HLPGKR + + F + R L+V+ L C Sbjct: 60 ASTISMPRVDSCILGKETLEQRE--RFTLYKIEVNNGSKTWIIYRRYGDFVLLNKKLRK-LYPQFRLHLPGKRFFKDNFNKDFIDKRQRGLEVFTNNLFC 156 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig822.17224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig822.17224.1 >prot_L-elsbetiae_contig822.17224.1 ID=prot_L-elsbetiae_contig822.17224.1|Name=mRNA_L-elsbetiae_contig822.17224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=234bp VDGQVRRGPGLDAEELPAVAGRIRPPERQGRQVRRLQDQRHRWPAHLARSback to top mRNA from alignment at L-elsbetiae_contig822:2238..9252- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig822.17224.1 ID=mRNA_L-elsbetiae_contig822.17224.1|Name=mRNA_L-elsbetiae_contig822.17224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7015bp|location=Sequence derived from alignment at L-elsbetiae_contig822:2238..9252- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig822:2238..9252- >mRNA_L-elsbetiae_contig822.17224.1 ID=mRNA_L-elsbetiae_contig822.17224.1|Name=mRNA_L-elsbetiae_contig822.17224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1404bp|location=Sequence derived from alignment at L-elsbetiae_contig822:2238..9252- (Laminarionema elsbetiae ELsaHSoW15)back to top |