mRNA_L-elsbetiae_contig8219.17223.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8219.17223.1
Unique NamemRNA_L-elsbetiae_contig8219.17223.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8219.17223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8219contigL-elsbetiae_contig8219:4176..8006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size414
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816905.8189442-CDS-L-elsbetiae_contig8219:4175..44571622816905.8189442-CDS-L-elsbetiae_contig8219:4175..4457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8219 4176..4457 -
1691683902.0975955-CDS-L-elsbetiae_contig8219:4175..44571691683902.0975955-CDS-L-elsbetiae_contig8219:4175..4457Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8219 4176..4457 -
1622816905.8293808-CDS-L-elsbetiae_contig8219:7874..80061622816905.8293808-CDS-L-elsbetiae_contig8219:7874..8006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8219 7875..8006 -
1691683902.1078942-CDS-L-elsbetiae_contig8219:7874..80061691683902.1078942-CDS-L-elsbetiae_contig8219:7874..8006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8219 7875..8006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8219.17223.1prot_L-elsbetiae_contig8219.17223.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8219 4176..8006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8219.17223.1

>prot_L-elsbetiae_contig8219.17223.1 ID=prot_L-elsbetiae_contig8219.17223.1|Name=mRNA_L-elsbetiae_contig8219.17223.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MHTDTHLSTPFLTHALTTILLSASYIATSSASCQHNVQLSLLHEVGAPSN
RTAEAGVRHSHRWVQAAPRAVGLLTLLPVVQPRLRRKKNSRRRNPPATDP
FPSTIPQRSPARLPIAAAPPRNAAVIHPAAQVPWHLRP
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mRNA from alignment at L-elsbetiae_contig8219:4176..8006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8219.17223.1 ID=mRNA_L-elsbetiae_contig8219.17223.1|Name=mRNA_L-elsbetiae_contig8219.17223.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3831bp|location=Sequence derived from alignment at L-elsbetiae_contig8219:4176..8006- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACACAGACACGCACCTTTCCACACCCTTTCTCACGCACGCACTCAC
GACAATATTATTGTCGGCCAGCTATATCGCCACATCATCAGCAAGCTGTC
AGCATAACGTCCAGTTGAGCCTTTTACACGAGGTGAGGGATGAAACGGTT
TTATGAGTAAAGTGCGGAGGACGATTCGTCCACTGAGGTCTAGACTACTA
ATTGCTAGACGCCGCCATCAAGTAGTCTCATACAAAACATATAACACACA
CACACACACACACAACACACAGAGAAAGAGAGAGAGAGAGAGAGAGAGAG
CGGTGATCTCTCGATGTATCTACAATATGCAGACTAACTAGTCTAGATCT
ATCTAATTTTTTTAATATAGATATCTATCTACTTCGAAGTAGTCGTGTAT
CTCCTAATCGATTATTTTTTTATTATCGTAGACTAGATATCTATCTGGTC
GTGATCTAATCGATTGATACAATCTGCAGATAGATATCAACTTGTAGCCG
AGGGGGCCGCTTTCCGCGAGTCACCGCTCAAATCGAAGTAGGGATTAGAT
ATAGAATAGGAGTATGAAGGAGTGTGGTGACTGAGTGCAGCATTATTTTC
GCGGGAGGGAGCCAACGGATCTCTCTCTGACTCTTCTCTCTCTGTGTCTC
TCTCCCTGTACCTCTCTCTCTCTGGGTGCAAAACTCACCCACAGTGCAAA
ACATCCGTGGTGCAGACTAATCGTCGGTACGATCATAAATGTTGCCCTAC
TGGGTCACGTTATCCACAGCATTACCGGGGGCGCGCGCGGTAGCGCCAAA
GGAAGTGCTTATTGGTCAACTAGCGAAGCGAGTACGTACGGTCGTCTGTA
CTACATACATACATAGTCTACACAACAAGTACATATACTAGATGTGACCC
CCCCCCCACGCGAAACACACTGCAGATCAAAATTATTTGTACGAACGTAT
CTACATAAATGGTATAACGTAGATACGTCTGGGAAACTTTTCCCGCGAAT
AGCCGGTCGCCCTGGTGGTCTTTCTAGCTGGTATCCCAGAAAACCTTCTA
AATAGCAGGCAGGTCACGGGGGGTTCGATTCCCGGCGGGGGCCACTTTTT
CTCGCAAAAAAGTGAGTTTTTCCTCTCGCTTTCCGTCCCTCTGTCATTGA
AAACGCCTGTTTATTATTGGCGTGTGTACACAACCCTCGACGTCACCGTC
GACGAAGGAAAGGGACGGCTGAATCCTTCTCGCGATCAAAATCTTAGGCA
AGCACCGCAGGAGGTGGGAGTGGGGCCTCGGAACCCCTCTCTGTGCGACC
ACGGTCCAGTACTCAAGCAAGATGCCCTCGTGGCAAGAAGCACGCCGAGC
ACTGGAAATAAATGTGAAGAAGAACAAGTTGAGAAGAACAAAAAAAAACT
AGATTTCCAACCTGCGCTTAGTACACTGTATGTGGTACACTTTTTTTTCT
CGTGGTGGTAGTGGGGCGGGGGTTGTTCCGAATTTCAAAGGCACCACCGG
CAAACGGTCTATCTCCAGGCGCATCGTCCTATTTTGGAAAGCTGTTTTGT
TTTCTGTCTTTGTCGCTGTTTTCCCAAATGATTTGGAACGTTTGTTCGCT
TGTCCCTGCGATGATCAACCGTGCGATTTTAAAATCGATTAGACCTTGGC
AAACGTCAACGTTTCCTCCCAATTTTCCCCAGACCTACGTTTTTTCCGCT
TTTGAAAACACCCAAAAACAAAGTTATGATTGGGCTTTATAATCTGGATT
GGAGGTGCCGTTTTTTTCGCTACTTCCTGCGATTGCCAACCGTGCGATTT
TAAAACAGACCATCACGGCAAACGGGCCCTCCCCTCAGAATTCCCCGTAC
GTATACCTATATATTTTCCGAATTCATTCTTAAAATAGTTCTCGAGATAT
TCGATCCGAAACCAACTTTTTCTCCAAGTCGTCATTATTCGGCCACACAA
CAACTGAAATTTAGTTTAGGACATCAACATGAGTTTTCCAGATGTAAGTG
TTCTTCTCTCTCCATGGAGATCACTTCATATCATGGCTGAAGGTCCGTCT
AACTAATTATTGTTCTCCTAGACGGCATACACCCGTAATCGTCTCCAAGT
TTCCCCCGGGGAGGGGATTATGTTTTTGTGAATGCACCCCCCCCCCCGGG
GGGAACTCGAACGGGGGGGGGGATATTTTTTTTTCCGCGACACTACCCTT
GGGGGGGGATATACCACTCTCAAAAGACACTACCCTTGGGGGGAGATATA
CCAATCTCAAAAATGAGCTCGGAGCCGCTCTCACTCCCAACAAACCCTGA
CATCGACTCGGATGCTGCAATCGTTGACTTGGTAGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGGACCAGGGGAGGAGCTGTAGTTGGGGCGGGGG
GGCCGGCTAGGTGATGGACAATGAACACGAATAATCATGTGCTCGGTTGT
TTCTTGTGGGTCGCTTTTGCGTAGGCATCAAGTTGGTGGGGGCTGCGCGA
CTTTTTTTTTCTCGTTATTAGTGCCTCTCTCTGTAGGTAAGCATAGCTGA
TGATGTGGATCTCAATTCAGTTGTTGTCTCGAGCGATTGAGTTTGTCAGG
CATGCGGTGTATCGGATTGTTGAGTCTGTCGTTGTTGTGCTTTCGTCCGT
ACGCGTGTTTGCTTTTTTGCAGACTGGTATCTGAATCAAAACCAAAACAC
TTCGATGATGACATTTCATGGTGCTCGATGTGACTTGATGCACACGGTGG
AGTCACGCACTCGTACTACTGCCGACAACAGGCTATCTATGTATGCCATC
CCAATTTATGCTCCTTGGTGGTAAACGTTACCATGTCAAGTGAGGAAAAA
TCTGGGAAAAATACCTACTGTCAAGGGATTAGACCACTCAGCCATAATAA
GGTAAAAGGTTAACCAAGTACTCGGCTGAGAGTACATCTTATAACACTAC
CCGAGGGGATCTCACCAAAAGACAAAACCCCGGGGGGAACTCGAAAAGGG
GGGGGGGATTTTTGTTTTTGTGAAAAAAGCAATAACCCCGGGGGGAACTC
AGAGAAATCATGCTTCCAGGCCGAAAAGGTGGTGGGGAGGGGGGGACTCA
AAAGGGGGAGGGGGGGTTCTTGGAGACGATTACGGTACTTGCAAACCCAT
CACGTGTTGCTTTCTTTTCCTGAAACTTGTATTTATACTCTCGCACAGCC
AGCTATGTAGCTGTCTGTGTGATGCACACGCTCCCGCCCTCCTTGTGGAA
GCGGGTGCGCGGCAAGCGTTAACATTCATCGTCCATACATAGTCTGCCCG
GAACCGGTTTTCATCACGCCCGACCTGTACAACAAGTCTTGCAGGGTTTT
TCGTTGTGTTGAAAACGGTTACGAAACGTTCGATCAAAATAATGATTTTT
ACTCTCAGGTGTTTGGCCGCAAGCAAGTAGTAACTGGTCTACGCATTGCG
TTTGCTATCTGATACCAATTCTCTTTCACGGACACTGCGCGCCACCCTTG
AAATTATCTTATTCCCGGACCGCTCAAACTCTTCTTGCGTATTCCACAGG
TAGGAGCACCGAGCAACCGAACTGCCGAAGCCGGCGTCCGCCACAGCCAC
AGATGGGTTCAAGCTGCACCAAGAGCAGTGGGCCTCCTGACACTGCTGCC
CGTAGTACAGCCGCGGCTTCGGAGAAAAAAAAACAGCCGGCGACGCAACC
CGCCAGCTACCGACCCATTCCCATCAACAATACCACAGCGATCCCCCGCA
AGACTTCCCATAGCAGCAGCACCTCCACGAAACGCCGCAGTAATACATCC
AGCGGCACAAGTACCATGGCATTTGCGTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8219:4176..8006-

>mRNA_L-elsbetiae_contig8219.17223.1 ID=mRNA_L-elsbetiae_contig8219.17223.1|Name=mRNA_L-elsbetiae_contig8219.17223.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig8219:4176..8006- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACACAGACACGCACCTTTCCACACCCTTTCTCACGCACGCACTCAC
GACAATATTATTGTCGGCCAGCTATATCGCCACATCATCAGCAAGCTGTC
AGCATAACGTCCAGTTGAGCCTTTTACACGAGATGCACACAGACACGCAC
CTTTCCACACCCTTTCTCACGCACGCACTCACGACAATATTATTGTCGGC
CAGCTATATCGCCACATCATCAGCAAGCTGTCAGCATAACGTCCAGTTGA
GCCTTTTACACGAGGTAGGAGCACCGAGCAACCGAACTGCCGAAGCCGGC
GTCCGCCACAGCCACAGATGGGTTCAAGCTGCACCAAGAGCAGTGGGCCT
CCTGACACTGCTGCCCGTAGTACAGCCGCGGCTTCGGAGAAAAAAAAACA
GCCGGCGACGCAACCCGCCAGCTACCGACCCATTCCCATCAACAATACCA
CAGCGATCCCCCGCAAGACTTCCCATAGCAGCAGCACCTCCACGAAACGC
CGCAGTAATACATCCAGCGGCACAAGTACCATGGCATTTGCGTCCTGTAG
GAGCACCGAGCAACCGAACTGCCGAAGCCGGCGTCCGCCACAGCCACAGA
TGGGTTCAAGCTGCACCAAGAGCAGTGGGCCTCCTGACACTGCTGCCCGT
AGTACAGCCGCGGCTTCGGAGAAAAAAAAACAGCCGGCGACGCAACCCGC
CAGCTACCGACCCATTCCCATCAACAATACCACAGCGATCCCCCGCAAGA
CTTCCCATAGCAGCAGCACCTCCACGAAACGCCGCAGTAATACATCCAGC
GGCACAAGTACCATGGCATTTGCGTCCT
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