mRNA_L-elsbetiae_contig8211.17217.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8211.17217.1
Unique NamemRNA_L-elsbetiae_contig8211.17217.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8211.17217.1 vs. uniprot
Match: D7FUE4_ECTSI (Aminotran_1_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUE4_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.490e-28
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 3 
Query:  507 QDFLSWLWIDTHNTAVTAEVVRLARAAGVPVRSGAPGYNLPTFFRVAVRKEEQRAALWKALRPLAPSS 710
            +DFLSWLWI+TH+ AVTA+VVRLARAAGVPVRSGAPGYNLPTFFR+AVRKE QRAALWKAL PLAPSS
Sbjct:  319 KDFLSWLWINTHDEAVTADVVRLARAAGVPVRSGAPGYNLPTFFRIAVRKEAQRAALWKALLPLAPSS 386
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BLAST of mRNA_L-elsbetiae_contig8211.17217.1 vs. uniprot
Match: A0A836C7I6_9STRA (Pyridoxal phosphate-dependent transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7I6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.830e-15
Identity = 44/63 (69.84%), Postives = 46/63 (73.02%), Query Frame = 3 
Query:  513 FLSWLWIDTHNTAVTAEVVRLARAAGVPVRSGAPGYNLPTFFRVAVRKEEQRAALWKALRPLA 701
            FLSWLWIDT + A  A  V  A+AAGVPVRSGAPGYNLPTFFR AVR  E R  L  AL PLA
Sbjct:  303 FLSWLWIDTGDAATCAAAVARAKAAGVPVRSGAPGYNLPTFFRAAVRPAETRRVLLAALAPLA 365
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BLAST of mRNA_L-elsbetiae_contig8211.17217.1 vs. uniprot
Match: A0A2P4YD19_9STRA (Histidinol-phosphate aminotransferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YD19_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.280e-14
Identity = 41/77 (53.25%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:  468 QLPSRMHRPLLGSQDFLSWLWIDTHNTAVTAEVVRLARAAGVPVRSGAPGYNLPTFFRVAVRKEEQRAALWKALRPL 698
            QL  R        + FLSW+W+DT + A   E  +LA+  GVPVRSG PGYNLPTF R+AVR  EQ A L KA  PL
Sbjct:  199 QLSKRFPTWEFFGKPFLSWIWLDTKSVATCEEACKLAKEHGVPVRSGKPGYNLPTFVRIAVRSPEQTAVLLKAWEPL 275
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BLAST of mRNA_L-elsbetiae_contig8211.17217.1 vs. uniprot
Match: H3GI85_PHYRM (Aminotran_1_2 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GI85_PHYRM)

HSP 1 Score: 82.8 bits (203), Expect = 1.320e-13
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:  513 FLSWLWIDTHNTAVTAEVVRLARAAGVPVRSGAPGYNLPTFFRVAVRKEEQRAALWKALRPL 698
            FLSW+W+DT + AV  E  +LA+  GVPVRSG PGYNLPTF R+AVR  +Q A L KA  PL
Sbjct:  304 FLSWIWVDTKSAAVCEEACKLAKEHGVPVRSGKPGYNLPTFVRIAVRNPQQTAVLLKAWEPL 365
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BLAST of mRNA_L-elsbetiae_contig8211.17217.1 vs. uniprot
Match: A0A2D4BUE7_PYTIN (Aminotran_1_2 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUE7_PYTIN)

HSP 1 Score: 80.9 bits (198), Expect = 5.310e-13
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:  462 SRQLPSRMHRPLLGSQDFLSWLWIDTHNTAVTAEVVRLARAAGVPVRSGAPGYNLPTFFRVAVRKEEQRAALWKA 686
            + QL +R    ++  + +LSW+W+DT + AV    VRLA+  GVPVRSG PGY LP F R+AVR+ EQ A L KA
Sbjct:  277 AEQLHARFPDWVIHGEPYLSWIWVDTKSAAVAENAVRLAKEHGVPVRSGKPGYELPAFVRIAVRRPEQTAVLLKA 351
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BLAST of mRNA_L-elsbetiae_contig8211.17217.1 vs. uniprot
Match: A0A4D9CV94_9STRA (Aminotran_1_2 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV94_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 5.970e-13
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 3 
Query:  513 FLSWLWIDTHNTAVTAEVVRLARAAGVPVRSGAPGYNLPTFFRVAVRKEEQRAALWKALRPLA 701
            +LSW+W+DTH+   T E VRLA AAG PVRS  PGYN+PTFFR+AVR  +    L  +LR LA
Sbjct:  307 YLSWVWVDTHDVETTTEAVRLASAAGTPVRSAGPGYNMPTFFRIAVRDPKVTNILLGSLRRLA 369
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BLAST of mRNA_L-elsbetiae_contig8211.17217.1 vs. uniprot
Match: A0A077WSN1_9FUNG (Aminotran_1_2 domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WSN1_9FUNG)

HSP 1 Score: 80.1 bits (196), Expect = 1.120e-12
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 3 
Query:  507 QDFLSWLWIDTHNTAVTAEVVRLARAAGVPVRSGAPGYNLPTFFRVAVRKEEQRAAL---WKAL 689
            +DFLSW+WID  + ++  + V LARAAGVPVRSG PGY  PTF R+AVRKE++ + L   WKAL
Sbjct:  313 KDFLSWVWIDMRSESMAEKAVELARAAGVPVRSGKPGYACPTFVRIAVRKEQETSHLINAWKAL 376
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BLAST of mRNA_L-elsbetiae_contig8211.17217.1 vs. uniprot
Match: A0A0P1A8N3_PLAHL (Class i ii superfamily protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A8N3_PLAHL)

HSP 1 Score: 79.0 bits (193), Expect = 2.510e-12
Identity = 39/77 (50.65%), Postives = 47/77 (61.04%), Query Frame = 3 
Query:  468 QLPSRMHRPLLGSQDFLSWLWIDTHNTAVTAEVVRLARAAGVPVRSGAPGYNLPTFFRVAVRKEEQRAALWKALRPL 698
            QL  R        ++FLSW+W+DT   A   E  +LA+  GVPVRSG PGYNLPT+ R+AVR  EQ A L KA   L
Sbjct:  289 QLSKRFPTWQFFGKEFLSWIWMDTRAVATCEEACKLAKEHGVPVRSGKPGYNLPTYIRIAVRSPEQTAVLLKAWESL 365
[Close]
BLAST of mRNA_L-elsbetiae_contig8211.17217.1 vs. uniprot
Match: A0A8H7UCW6_9FUNG (Aminotran_1_2 domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UCW6_9FUNG)

HSP 1 Score: 79.0 bits (193), Expect = 2.720e-12
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 3 
Query:  507 QDFLSWLWIDTHNTAVTAEVVRLARAAGVPVRSGAPGYNLPTFFRVAVRKEEQRAAL---WKAL 689
            +DFLSW+W+D  N AV  E V+LARAAGVPVRSG PGY  PT+ RVAVR+E     L   WK+L
Sbjct:  314 KDFLSWVWVDMKNEAVATEAVKLARAAGVPVRSGQPGYQRPTYVRVAVREENCVDILVQAWKSL 377
[Close]
BLAST of mRNA_L-elsbetiae_contig8211.17217.1 vs. uniprot
Match: A0A067BY75_SAPPC (Aminotran_1_2 domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BY75_SAPPC)

HSP 1 Score: 78.6 bits (192), Expect = 3.360e-12
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 3 
Query:  468 QLPSRMHRPLLGSQDFLSWLWIDTHNTAVTAEVVRLARAAGVPVRSGAPGYNLPTFFRVAVRKEEQRAAL---WKAL 689
            QL +      +  Q +LSW+W+DT +  V AE  RL++  GVPVRSGAPGYNLPT+ R+AVR   Q   L   WK+L
Sbjct:  286 QLATHFPSWTVHGQPYLSWVWVDTKSVEVAAEATRLSKLHGVPVRSGAPGYNLPTYVRIAVRNATQTTVLLQAWKSL 362
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8211.17217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUE4_ECTSI1.490e-2888.24Aminotran_1_2 domain-containing protein n=2 Tax=Ec... [more]
A0A836C7I6_9STRA2.830e-1569.84Pyridoxal phosphate-dependent transferase n=1 Tax=... [more]
A0A2P4YD19_9STRA6.280e-1453.25Histidinol-phosphate aminotransferase n=1 Tax=Phyt... [more]
H3GI85_PHYRM1.320e-1361.29Aminotran_1_2 domain-containing protein n=2 Tax=Ph... [more]
A0A2D4BUE7_PYTIN5.310e-1350.67Aminotran_1_2 domain-containing protein n=1 Tax=Py... [more]
A0A4D9CV94_9STRA5.970e-1358.73Aminotran_1_2 domain-containing protein n=3 Tax=Mo... [more]
A0A077WSN1_9FUNG1.120e-1259.38Aminotran_1_2 domain-containing protein n=2 Tax=Li... [more]
A0A0P1A8N3_PLAHL2.510e-1250.65Class i ii superfamily protein n=1 Tax=Plasmopara ... [more]
A0A8H7UCW6_9FUNG2.720e-1260.94Aminotran_1_2 domain-containing protein n=1 Tax=Um... [more]
A0A067BY75_SAPPC3.360e-1249.35Aminotran_1_2 domain-containing protein n=4 Tax=Sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8211contigL-elsbetiae_contig8211:1487..2882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue5.3e-27
Seed eggNOG ortholog2880.D7FUE4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Aminotransferase class I and II
EggNOG OGs2QWS0@2759,COG0079@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1396
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8211.17217.1prot_L-elsbetiae_contig8211.17217.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8211 1858..2199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816905.3911688-UTR-L-elsbetiae_contig8211:1486..18571622816905.3911688-UTR-L-elsbetiae_contig8211:1486..1857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8211 1487..1857 +
1691683901.7965038-UTR-L-elsbetiae_contig8211:1486..18571691683901.7965038-UTR-L-elsbetiae_contig8211:1486..1857Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8211 1487..1857 +
1622816905.4153402-UTR-L-elsbetiae_contig8211:2199..28821622816905.4153402-UTR-L-elsbetiae_contig8211:2199..2882Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8211 2200..2882 +
1691683901.8203425-UTR-L-elsbetiae_contig8211:2199..28821691683901.8203425-UTR-L-elsbetiae_contig8211:2199..2882Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8211 2200..2882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816905.4047039-CDS-L-elsbetiae_contig8211:1857..21991622816905.4047039-CDS-L-elsbetiae_contig8211:1857..2199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8211 1858..2199 +
1691683901.8093824-CDS-L-elsbetiae_contig8211:1857..21991691683901.8093824-CDS-L-elsbetiae_contig8211:1857..2199Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8211 1858..2199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8211.17217.1

>prot_L-elsbetiae_contig8211.17217.1 ID=prot_L-elsbetiae_contig8211.17217.1|Name=mRNA_L-elsbetiae_contig8211.17217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MNHTRHCRVLLPRFLQFGRQTKALLLPECSSRQLPSRMHRPLLGSQDFLS
WLWIDTHNTAVTAEVVRLARAAGVPVRSGAPGYNLPTFFRVAVRKEEQRA
ALWKALRPLAPSS*
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mRNA from alignment at L-elsbetiae_contig8211:1487..2882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8211.17217.1 ID=mRNA_L-elsbetiae_contig8211.17217.1|Name=mRNA_L-elsbetiae_contig8211.17217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1396bp|location=Sequence derived from alignment at L-elsbetiae_contig8211:1487..2882+ (Laminarionema elsbetiae ELsaHSoW15)
CATGGGAGCTGACAAAAATCTGGAATTGCGACACCCGCAAGGAGATTCTA
GAACAGCACCCGGAGTGGGAGGTACATGGAAAGGTGGGACGAAATGCGGT
TCAAGAGGTATCCGTCCCGTCTAACTAGAGAGTTGCAGGCATTGGCTGTC
AGTGTTTTTTAGGTATCTGCATCCCAAAAGGTGACGGCGGAGTACGTCAA
GGGTCCGGAAAAGACCGTCCGATCAAATCACAATCACGTCAAGGGAACGC
GACCATGTCGCTATCTCTGCATCCCAAATACACAAAGTGCCATCGTTTGC
GATTGCCCGAATGGAAACTTGGGGGCCCGCGGACGATGAGAAGCTGATAA
TGCCTCCCACCCGCATTGCACATGAACCATACAAGGCACTGTCGCGTACT
GCTTCCGCGTTTCTTGCAGTTTGGTCGACAAACGAAGGCTCTATTATTGC
CTGAGTGCAGTTCTCGCCAACTACCATCCCGCATGCACCGCCCCCTCCTT
GGTTCCCAGGACTTCCTCTCGTGGCTTTGGATCGACACCCACAATACGGC
GGTGACTGCGGAGGTGGTTCGTCTCGCTCGCGCGGCGGGAGTTCCCGTGC
GCTCGGGGGCACCCGGCTACAATCTACCGACTTTTTTCAGGGTCGCGGTG
CGCAAGGAAGAGCAGAGGGCGGCCCTGTGGAAAGCCCTGCGCCCGCTCGC
CCCCTCTTCTTAGATCAGCTTGATTAGTTGCTTGAGATGCTTATGTAGCT
GCAGGTGGAAAAGAGGGCGAGAGATAGTAGTGCATACGGATAACATCAGT
ATAAAGTGCAGGGCAAACTACCTACATGGGAGCATGGATTTTGCGTTCCC
ATTGTTTTGAGCAGTTTCAATTTATCGTTCGAGCGCATGTGCCCGCTAAA
TCTCGGGCGGCTTGTGATGCGGACTTCAGCCCTTTTCGTACATTTTTTGG
GGCTCCATACAGCACTTTTTCTGTTGATTTCATCCGTGTAAGACTACTCT
GGTTATGGTTTTGCTCCCGTCTGGTAGTTTCGGGAGTCTCGGGAATCGTC
GGGAGGGCGTATCGGCCAGGGGAGTGGTTGGGACTGGATCGGGGGGCAAG
TGTGGGTTGATGGCGGGATTGACCGTTGACGGAGGCAGTATTGTTTGTGT
GGTAAAGATAAAGCCTGTTTCGGCAATTTAACCAAATAGCACGTGAGGTG
GCATTTTTAGGGACGGCCAGTTTTACGCCCGACCCCGCGAGAGGGCCAGG
ACAAGATACCTAGGAGCCTCAAGTTATTCTGCTGTGTCTCTCCAAAAGAG
CTGTGATGACGTGCAAAAACAGTGCAGTTGCGGTAGTTGACCAGCGAACG
CTTTGTTTGCGTGAGTTCACCACGTAAAGATAAGGACCAAACCTAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8211:1487..2882+

>mRNA_L-elsbetiae_contig8211.17217.1 ID=mRNA_L-elsbetiae_contig8211.17217.1|Name=mRNA_L-elsbetiae_contig8211.17217.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig8211:1487..2882+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCATACAAGGCACTGTCGCGTACTGCTTCCGCGTTTCTTGCAGTT
TGGTCGACAAACGAAGGCTCTATTATTGCCTGAGTGCAGTTCTCGCCAAC
TACCATCCCGCATGCACCGCCCCCTCCTTGGTTCCCAGGACTTCCTCTCG
TGGCTTTGGATCGACACCCACAATACGGCGGTGACTGCGGAGGTGGTTCG
TCTCGCTCGCGCGGCGGGAGTTCCCGTGCGCTCGGGGGCACCCGGCTACA
ATCTACCGACTTTTTTCAGGGTCGCGGTGCGCAAGGAAGAGCAGAGGGCG
GCCCTGTGGAAAGCCCTGCGCCCGCTCGCCCCCTCTTCTTAGATGAACCA
TACAAGGCACTGTCGCGTACTGCTTCCGCGTTTCTTGCAGTTTGGTCGAC
AAACGAAGGCTCTATTATTGCCTGAGTGCAGTTCTCGCCAACTACCATCC
CGCATGCACCGCCCCCTCCTTGGTTCCCAGGACTTCCTCTCGTGGCTTTG
GATCGACACCCACAATACGGCGGTGACTGCGGAGGTGGTTCGTCTCGCTC
GCGCGGCGGGAGTTCCCGTGCGCTCGGGGGCACCCGGCTACAATCTACCG
ACTTTTTTCAGGGTCGCGGTGCGCAAGGAAGAGCAGAGGGCGGCCCTGTG
GAAAGCCCTGCGCCCGCTCGCCCCCTCTTCTTAG
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