mRNA_L-elsbetiae_contig821.17216.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig821.17216.1
Unique NamemRNA_L-elsbetiae_contig821.17216.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig821.17216.1 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.570e-60
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 2 
Query:    2 ASELWHIHGRHFDLTAFLDHHPGGSSILEAMRGAEDITPVFESYHALAHSAAIRQSLEKFEWAGKLVDDVSEREAALVGGAPGKEPLRYRWEEGGFYAVLTGRVKAHFLEK 334
             SELWHIHGRHFDLT FLDHHPGGSSILEAM+GAEDITPVFESYHALAHSAAIRQSLEKFEW GKLVDDVSEREAALVGG   KEP+RYRW+EGGFYAVLT RVK++FL+K
Sbjct:   89 TSELWHIHGRHFDLTPFLDHHPGGSSILEAMKGAEDITPVFESYHALAHSAAIRQSLEKFEWTGKLVDDVSEREAALVGGTR-KEPVRYRWDEGGFYAVLTARVKSYFLQK 198
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BLAST of mRNA_L-elsbetiae_contig821.17216.1 vs. uniprot
Match: D7G7E3_ECTSI (FA_desaturase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E3_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 5.290e-39
Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 2 
Query:   92 MRGAEDITPVFESYHALAHSAAIRQSLEKFEWAGKLVDDVSEREAALVGGAPGKEPLRYRWEEGGFYAVLTGRVKAHFLEK 334
            M+GAEDITPVFESYHALAHSAAIRQ+LEKFEW GKL+DDVSEREAALVGG   KEP+RYRW+EGGFYAVL  RVKA+FL+K
Sbjct:    1 MKGAEDITPVFESYHALAHSAAIRQNLEKFEWTGKLMDDVSEREAALVGGTR-KEPVRYRWDEGGFYAVLIARVKAYFLQK 80
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BLAST of mRNA_L-elsbetiae_contig821.17216.1 vs. uniprot
Match: A0A835YLX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.460e-17
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:   95 RGAEDITPVFESYHALAHSAAIRQSLEKFEWAGKLVDDVSEREAALVGGAPGKEPLRYRWEEGGFYAVLTGRVKAHFL 328
            RG ED+T +FESYHAL++  AIR  L+   + GK+ DD+  +EAA++ G   + PL Y +E GGFY VL  RVKAHFL
Sbjct:    3 RGLEDVTALFESYHALSNLTAIRHGLKAHLYTGKVTDDLQAKEAAMMRGVD-RNPLAYTYEPGGFYDVLKARVKAHFL 79
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BLAST of mRNA_L-elsbetiae_contig821.17216.1 vs. uniprot
Match: A0A5K0U7T4_9VIRU (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Yasminevirus sp. GU-2018 TaxID=2420051 RepID=A0A5K0U7T4_9VIRU)

HSP 1 Score: 82.4 bits (202), Expect = 4.210e-16
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 2 
Query:    2 ASELWHIHGRHFDLTAFLDHHPGGSSILEAMRGAEDITPVFESYHALAHSAAIRQSLEKFEWA-GKLVDDVSEREAALVGGAPGKEPLRYRWEEGGFYAVLTGRVKAHF 325
               LW IHG+++DLT F+D HPGG ++LEA +G  D TP+FESYH++     I+  + K+E +    V  +      +     G    +Y +   GFY+V+T RV+ HF
Sbjct:    6 TKRLWKIHGKYYDLTDFMDKHPGGRTVLEACKGLIDSTPLFESYHSVCDMDKIKAIMPKYEVSVSTSVPTIFSMSDVISKSNQGP---KYTFNRDGFYSVVTNRVREHF 111
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BLAST of mRNA_L-elsbetiae_contig821.17216.1 vs. uniprot
Match: A0A0V0QTF1_PSEPJ (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QTF1_PSEPJ)

HSP 1 Score: 78.2 bits (191), Expect = 1.290e-14
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 2 
Query:    2 ASELWHIHGRHFDLTAFLDHHPGGSSILEAMRGAEDITPVFESYHALAHSAAIRQSLEKFEWAGKLVDDVSEREAALVGGAPGKEPLRYRWEEGGFYAVLTGRVKAHF 325
            + +LWH++G  +DL++F++ HPGG  IL+  RG  DITP+FESYHA A    ++Q L  ++                VG +  + P +Y + +G FY V+  RV+ +F
Sbjct:   16 SKDLWHLYGNTYDLSSFMEKHPGGKQILQVTRGHLDITPMFESYHAFADLDKLKQDLATYQ----------------VGKS--EYPQKYTFNKGEFYDVVRERVRKYF 105
[Close]
BLAST of mRNA_L-elsbetiae_contig821.17216.1 vs. uniprot
Match: A0A6C0KIQ1_9ZZZZ (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KIQ1_9ZZZZ)

HSP 1 Score: 74.3 bits (181), Expect = 2.760e-13
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:    8 ELWHIHGRHFDLTAFLDHHPGGSSILEAMRGAEDITPVFESYHALAHSAAIRQSLEKFEWAG 193
            +LWHIHG+ +DLT+FL+ HPGG +ILE  RG +DI+ +FE+YHA +    I   L+K++ AG
Sbjct:    3 DLWHIHGKTYDLTSFLEQHPGGRAILEKTRGQKDISALFETYHAFSDIQQIETILQKYQVAG 64
[Close]
BLAST of mRNA_L-elsbetiae_contig821.17216.1 vs. uniprot
Match: A0A6C0DJE5_9ZZZZ (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DJE5_9ZZZZ)

HSP 1 Score: 70.1 bits (170), Expect = 8.870e-12
Identity = 29/58 (50.00%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:   11 LWHIHGRHFDLTAFLDHHPGGSSILEAMRGAEDITPVFESYHALAHSAAIRQSLEKFE 184
            +W+I+G+ +DL++F+D+HPGGS IL    G +D T +FESYHA ++  +IR+SL+K+E
Sbjct:    1 MWNIYGKKYDLSSFIDNHPGGSEILIKTMGLDDCTALFESYHAFSNIDSIRKSLDKYE 58
[Close]
BLAST of mRNA_L-elsbetiae_contig821.17216.1 vs. uniprot
Match: A0A7S4IGU0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IGU0_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.570e-10
Identity = 43/104 (41.35%), Postives = 53/104 (50.96%), Query Frame = 2 
Query:   14 WHIHGRHFDLTAFLDHHPGGSSILEAMRGAEDITPVFESYHALAHSAAIRQSLEKFEWAGKLVDDVSEREAALVGGAPGKEPLRYRWEEGGFYAVLTGRVKAHF 325
            W I G+ +DL+ F+D HPGGS IL   +G  D T +FES HAL+     R  L K+E                V  AP KE L + WE+ GFY VL  RV   F
Sbjct:   36 WVIRGKSYDLSEFIDKHPGGSYILLLGKG-RDCTELFESVHALSGINGPRSMLRKYE----------------VKDAPIKEEL-FAWEDDGFYGVLRKRVSDRF 121
[Close]
BLAST of mRNA_L-elsbetiae_contig821.17216.1 vs. uniprot
Match: A0A6C0HD57_9ZZZZ (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HD57_9ZZZZ)

HSP 1 Score: 62.0 bits (149), Expect = 6.390e-9
Identity = 25/58 (43.10%), Postives = 42/58 (72.41%), Query Frame = 2 
Query:   11 LWHIHGRHFDLTAFLDHHPGGSSILEAMRGAEDITPVFESYHALAHSAAIRQSLEKFE 184
            +W+I+G+ +DLT+++D+HPGG  IL   +G ED + +FE+YHA +    I+  L+K+E
Sbjct:    1 MWNINGKVYDLTSYIDNHPGGKDILIQTKGLEDCSALFETYHAFSDKKLIKCILDKYE 58
[Close]
BLAST of mRNA_L-elsbetiae_contig821.17216.1 vs. uniprot
Match: A0A0G4FKE0_9ALVE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FKE0_9ALVE)

HSP 1 Score: 61.6 bits (148), Expect = 9.180e-9
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 2 
Query:   11 LWHIHGRHFDLTAFLDHHPGGSSILEAMRGAEDITPVFESYHALAHSA-AIRQSLEKF 181
            +W IHG  FDLT FLDHHPGG  +L      ED + +FESYHAL++    I   L+KF
Sbjct:   22 VWRIHGELFDLTPFLDHHPGGRDVLMTACNMEDASALFESYHALSNRRDVIWTQLQKF 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig821.17216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKY7_9PHAE1.570e-6088.29Cytochrome b5 heme-binding domain-containing prote... [more]
D7G7E3_ECTSI5.290e-3983.95FA_desaturase domain-containing protein n=1 Tax=Ec... [more]
A0A835YLX3_9STRA3.460e-1752.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5K0U7T4_9VIRU4.210e-1637.61Cytochrome b5-like heme/steroid binding domain n=1... [more]
A0A0V0QTF1_PSEPJ1.290e-1436.11Cytochrome b5-like heme/steroid binding domain n=1... [more]
A0A6C0KIQ1_9ZZZZ2.760e-1351.61Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6C0DJE5_9ZZZZ8.870e-1250.00Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7S4IGU0_9EUKA1.570e-1041.35Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6C0HD57_9ZZZZ6.390e-943.10Cytochrome b5 heme-binding domain-containing prote... [more]
A0A0G4FKE0_9ALVE9.180e-951.72Cytochrome b5 heme-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig821contigL-elsbetiae_contig821:25643..27627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size338
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig821.17216.1prot_L-elsbetiae_contig821.17216.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig821 25645..27627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816905.090437-CDS-L-elsbetiae_contig821:25644..257841622816905.090437-CDS-L-elsbetiae_contig821:25644..25784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 25645..25784 -
1691683901.548009-CDS-L-elsbetiae_contig821:25644..257841691683901.548009-CDS-L-elsbetiae_contig821:25644..25784Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 25645..25784 -
1622816905.101968-CDS-L-elsbetiae_contig821:27149..272781622816905.101968-CDS-L-elsbetiae_contig821:27149..27278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 27150..27278 -
1691683901.5567968-CDS-L-elsbetiae_contig821:27149..272781691683901.5567968-CDS-L-elsbetiae_contig821:27149..27278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 27150..27278 -
1622816905.1145144-CDS-L-elsbetiae_contig821:27560..276271622816905.1145144-CDS-L-elsbetiae_contig821:27560..27627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 27561..27627 -
1691683901.5684686-CDS-L-elsbetiae_contig821:27560..276271691683901.5684686-CDS-L-elsbetiae_contig821:27560..27627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 27561..27627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig821.17216.1

>prot_L-elsbetiae_contig821.17216.1 ID=prot_L-elsbetiae_contig821.17216.1|Name=mRNA_L-elsbetiae_contig821.17216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
GVGAVAHSREALRPHRVLGPPPGGVEHPGGDAGGGGHHPGLRELPRPGAQ
RRHPPEPRKVRVGREARGRRVGAGSRAGRRGPRKGAAEVPLGGGGILRRA
DGEGQGPLLGEK
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mRNA from alignment at L-elsbetiae_contig821:25643..27627-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig821.17216.1 ID=mRNA_L-elsbetiae_contig821.17216.1|Name=mRNA_L-elsbetiae_contig821.17216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1985bp|location=Sequence derived from alignment at L-elsbetiae_contig821:25643..27627- (Laminarionema elsbetiae ELsaHSoW15)
GGCGTCGGAGCTGTGGCACATTCACGGGAGGCACTTCGACCTCACCGCGT
TCTTGGACCACCACCCGGTGAGGCAGGAGCCGGTGGTTAGGTGCATTGTT
GTGCCTGGTGTCTATTGAGCGCAGGGCATCAGAGTTGTCTGTTTACTCTA
TGGTAGTGTCTACCGGATGTGTACGGCGTGATATATGTAGGAGATCTGCG
AAACCGGCAACAGCGCTCTCTCCTTTGCTCCACATTGTGAAATCCAGTTC
CTGTCTCTTGTCTCTGTCTACCTACCCCTCTCTCTCTCCTCGCGCTATGC
ATGTGTACCGTGGGGGCTCCGTGTATATATCGCGGCGGTGTGGTCATAGG
GGGGGTCGAGCATCCTGGAGGCGATGCGGGGGGCGGAGGACATCACCCCG
GTCTTCGAGAGCTACCACGCCCTGGCGCACAGCGCCGCCATCCGCCAGAG
CCTCGAAAAGTTCGAGTGGGCCGGGAAGGTGATAAAATGTTTATTCCGTA
CATCAGGGGCGGCCTGACGCGATTTTTTATTTTTATTGTTCCTCCCATCA
TTGGCATATTTGTCGTCTGCCCCACTGGCCCCCTTCCTCCACTACGACTA
GCTAGACGACCCAACCGGGGTCCCGTCACACAGGAGGGGGGGGGATGGGC
CCCTTCCTGCGGCGCCTCCTGCCTTAGAGGTGATGTGTGAAAGGCTGGAG
AAAGGGGATTGACTCAAATCCTTCGATACCTCAGTTCCTCCGCGGTACTA
CCGCACCGGAGGGGGGTCTGCGTGCCCACACACGCCCGCGAAATGACACA
CGACCCACCCCACGTACCCCCCAAGGATCCCGCGATTGACCGATCTGCTT
TGGTACGGAGTACCACCCACATACACGAAGGCGGGATAGGATACATATCA
CGAAGGCGGGATAGGATACCGTAGGTGACACAAGATACCACACCCCCTGG
GCAGATTGTCAAAGCTCGATTCCTCCCCCGCAAGAAGAGTGCCAGTGCCA
AAAAGGGTGGCGTTGGAAAGATCTAGTCAAGGGCTGTCCGAAAATGTGTG
GTTTGGTGCTGGCAACTTCTTCGTTACGGAGTAGTGGAGCGCTAAAATTC
GGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAGGCAGGCAGACAG
GCAGGCCCGTCCAAAACCAACCATGAGCGGCCCGCTGGATGCGACTCGTA
CCGTTGTCAAGCGCACCCTTTCCCTACCTGCCGTTGACATTGCTGTGCGC
ATCCCCGGCGGCACCGTGAGAGCCCCGTACATGAACATACGTACGTAGGT
ATGTACCTAAATAGCGCAATATTCTTCGTTAATTGAAGTTTTAAGCCGTG
CCATTTATATTATTTTTTGCGGTTTGCTCTCCTCCGACGGTGCTGTATTT
TGGTAGATAATCCATGTACTACAAGAAACTTACCACAAACCACGACTGTC
ATCCGGCAGCTCAGCACGACGATTTCATCTTTTCCACTTGTTCCTTACCT
CTTGTGTGTGCGTACGTATGCGTGTGTGTGTGTGTGTGTATTTGTTCACC
TTTGAGACGAACCCACACACACATGAAACATTTAATGAACCAACAGCTTC
TTGGACGACAATTCTGACTAGCTTGCTTAATTTTCCTCAACATGCTGCAC
CGACTACGCCTCCTTGAGTGTGTATGCCTGTGGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTCTGTCTGTCTGCTGGCTGTGTATGTGTGTGCGTG
CGTGCGCAAGTTTTTGTCCACCGCTGAGACGAGAACCCTTGCAAGAGACG
AGAACCCTCTCACAAATTTCCAACGAACCAAAACACCAAACAGCTCGTGG
ACGACGTGTCGGAGCGGGAAGCCGCGCTGGTCGGCGGGGCCCCCGGAAAG
GAGCCGCTGAGGTACCGCTGGGAGGAGGGGGGATTCTACGCCGTGCTGAC
GGGGAGGGTCAAGGCCCACTTCTTGGAGAAAAACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig821:25643..27627-

>mRNA_L-elsbetiae_contig821.17216.1 ID=mRNA_L-elsbetiae_contig821.17216.1|Name=mRNA_L-elsbetiae_contig821.17216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig821:25643..27627- (Laminarionema elsbetiae ELsaHSoW15)
GGCGTCGGAGCTGTGGCACATTCACGGGAGGCACTTCGACCTCACCGCGT
TCTTGGACCACCACCCGGGCGTCGGAGCTGTGGCACATTCACGGGAGGCA
CTTCGACCTCACCGCGTTCTTGGACCACCACCCGGGGGGGTCGAGCATCC
TGGAGGCGATGCGGGGGGCGGAGGACATCACCCCGGTCTTCGAGAGCTAC
CACGCCCTGGCGCACAGCGCCGCCATCCGCCAGAGCCTCGAAAAGTTCGA
GTGGGCCGGGAAGGGGGGGTCGAGCATCCTGGAGGCGATGCGGGGGGCGG
AGGACATCACCCCGGTCTTCGAGAGCTACCACGCCCTGGCGCACAGCGCC
GCCATCCGCCAGAGCCTCGAAAAGTTCGAGTGGGCCGGGAAGCTCGTGGA
CGACGTGTCGGAGCGGGAAGCCGCGCTGGTCGGCGGGGCCCCCGGAAAGG
AGCCGCTGAGGTACCGCTGGGAGGAGGGGGGATTCTACGCCGTGCTGACG
GGGAGGGTCAAGGCCCACTTCTTGGAGAAAAACTCGTGGACGACGTGTCG
GAGCGGGAAGCCGCGCTGGTCGGCGGGGCCCCCGGAAAGGAGCCGCTGAG
GTACCGCTGGGAGGAGGGGGGATTCTACGCCGTGCTGACGGGGAGGGTCA
AGGCCCACTTCTTGGAGAAAAA
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