mRNA_L-elsbetiae_contig821.17214.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig821.17214.1
Unique NamemRNA_L-elsbetiae_contig821.17214.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig821.17214.1 vs. uniprot
Match: D8LB29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB29_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 4.190e-42
Identity = 88/161 (54.66%), Postives = 103/161 (63.98%), Query Frame = 1 
Query:   34 GLGLDGAGTFSQSVYPYAFSCFC-------FARDLGLCRSMSGTPGSVPQLRLGGPGVMAASVSDDSXXXXXRPPRARSLLTVYPVPDKPVALDVVNWRRIRKKEERWFYGKPQPRTNVQRCYGPELTEHLTRNVVLRGYHVRVLAAHNAEVYLRAGLESM 495
            G  + GAG  S    P A +            R   L R  S +  ++PQLRLG     +    +DS     +     S LTVYPVPDKPV+LDVV+WRRIR+KE R  YG+PQPRTNVQRCYGPELTEHLTR+ VLRGYH+RVL AHNAEV LRAGLE+M
Sbjct:  481 GRRMGGAGPTSSPGGPVAMAASAAHRTAAGLPRSPSLARGQSMSGAAIPQLRLGAGMAASQQQLEDSVAAHPQRRARSSKLTVYPVPDKPVSLDVVHWRRIRRKETRCSYGRPQPRTNVQRCYGPELTEHLTRSYVLRGYHLRVLVAHNAEVCLRAGLEAM 641
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BLAST of mRNA_L-elsbetiae_contig821.17214.1 vs. uniprot
Match: A0A6H5KM86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM86_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 7.520e-38
Identity = 69/83 (83.13%), Postives = 76/83 (91.57%), Query Frame = 1 
Query:  247 SLLTVYPVPDKPVALDVVNWRRIRKKEERWFYGKPQPRTNVQRCYGPELTEHLTRNVVLRGYHVRVLAAHNAEVYLRAGLESM 495
            S LTVYPVPDKPV+LDVV+WRRIR+KE R  YG+PQPRTNVQRCYGPELTEHLTR+ VLRGYH+RVL AHNAEV LRAGLE+M
Sbjct:   10 SKLTVYPVPDKPVSLDVVHWRRIRRKETRCSYGRPQPRTNVQRCYGPELTEHLTRSYVLRGYHLRVLVAHNAEVCLRAGLEAM 92
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig821.17214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB29_ECTSI4.190e-4254.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM86_9PHAE7.520e-3883.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig821contigL-elsbetiae_contig821:14549..16026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.6
Seed ortholog evalue6.2e-37
Seed eggNOG ortholog2880.D8LB29
KEGG koko:K20408
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of TOR signaling
EggNOG OGsKOG0269@1,KOG0269@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-27_005450.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size498
Cds size495
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig821.17214.1prot_L-elsbetiae_contig821.17214.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig821 14551..16026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816905.2478707-CDS-L-elsbetiae_contig821:14550..146321622816905.2478707-CDS-L-elsbetiae_contig821:14550..14632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 14551..14632 -
1691683901.676283-CDS-L-elsbetiae_contig821:14550..146321691683901.676283-CDS-L-elsbetiae_contig821:14550..14632Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 14551..14632 -
1622816905.2602742-CDS-L-elsbetiae_contig821:15063..152311622816905.2602742-CDS-L-elsbetiae_contig821:15063..15231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 15064..15231 -
1691683901.690263-CDS-L-elsbetiae_contig821:15063..152311691683901.690263-CDS-L-elsbetiae_contig821:15063..15231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 15064..15231 -
1622816905.2707758-CDS-L-elsbetiae_contig821:15781..160261622816905.2707758-CDS-L-elsbetiae_contig821:15781..16026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 15782..16026 -
1691683901.7056901-CDS-L-elsbetiae_contig821:15781..160261691683901.7056901-CDS-L-elsbetiae_contig821:15781..16026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig821 15782..16026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig821.17214.1

>prot_L-elsbetiae_contig821.17214.1 ID=prot_L-elsbetiae_contig821.17214.1|Name=mRNA_L-elsbetiae_contig821.17214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
KGCVRRGEAKLGLGLDGAGTFSQSVYPYAFSCFCFARDLGLCRSMSGTPG
SVPQLRLGGPGVMAASVSDDSPPPPPRPPRARSLLTVYPVPDKPVALDVV
NWRRIRKKEERWFYGKPQPRTNVQRCYGPELTEHLTRNVVLRGYHVRVLA
AHNAEVYLRAGLESM
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mRNA from alignment at L-elsbetiae_contig821:14549..16026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig821.17214.1 ID=mRNA_L-elsbetiae_contig821.17214.1|Name=mRNA_L-elsbetiae_contig821.17214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1478bp|location=Sequence derived from alignment at L-elsbetiae_contig821:14549..16026- (Laminarionema elsbetiae ELsaHSoW15)
AAAGGCTGTGTCAGGAGGGGTGAGGCAAAGTTAGGGTTAGGGTTGGACGG
TGCGGGCACCTTCAGCCAATCAGTATACCCGTACGCCTTCTCCTGCTTCT
GTTTCGCCCGTGATTTGGGCCTTTGCAGGAGCATGTCAGGCACGCCAGGG
TCGGTGCCGCAGCTGAGGCTCGGTGGGCCGGGGGTGATGGCAGCATCGGT
TTCCGACGACTCGCCGCCTCCGCCACCGCGGCCTCCAAGAGCCAGGTGAG
AGAGCCCCCGTCCCGCGGTATGCGCTCTTGCGTTCATCATGGATGGGCAT
CCGCCATGTTTGCGTGTAGTTTGTTTCCTGGTTTGCTGGTGTTTCTCTCT
GTTGAGTAAGTAGATGGCGATCAAAGCAGTTGATTTGTTCAAAAACACGA
AAAATACCCCGGTCATCCGTTTGTACGTGCATTTTCTGCTTTTTTTTTGT
AAGAACGCCCCCGTATTCGTCGTTGTTGCGTTTGGGTCGAAACGGTCGCC
AAAAAAGGCATTTTCTGAGCAGAGATCGGGGAAAAAAATTAACGTGAGGA
CCAAAAACAAGAACAGCAACGAAAATAGTGGTATACGTGCCCCCTGAAGG
TGTTTAGAACCAAGTCGGTTTATCCACACGTGCTTTCCTGAACGTGTGCT
GTTCAGGCAACCTTTTCGCACAGCTCATGTTGTCTGTCTTGTGCCTCTTC
TGTTGAAGCACAACGCAACTAAAATCAAAACTGGAGTAGCGTGTGAAGAG
AAGGGGGAAAAAACGGCCACTTTTCACCGGAACCTCTCCGAACAGGTCGC
TGTTGACCGTGTACCCCGTGCCCGACAAGCCGGTCGCTCTGGATGTCGTC
AACTGGCGCCGCATCCGCAAGAAGGAAGAGAGGTGGTTCTATGGCAAGCC
GCAGCCGAGGACGAACGTTCAGCGGTGCTACGGCCCGGAGCTGACGGAGC
ACCTCACCAGGAAGTGAGTCGTTGGCCAATCAGCAACCGAGATGAAAACG
GCATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGGGT
GATTTGCGCTTTGGCTTTGCCGAGCTGTGATCGGTGTGTGGCAGCAAGCT
TTTGGGTTCTCACCGCTGTCGGTGGTCGTTGTCCTGGAGCAGGCCGACAG
GTCTGTCGGGGCTAACGGGCGCCTCGTCAACCAAAGCCGCTCCTTGCTGC
GATTTTCTCGCATATTTAATCGCCCCTGCCCCCCCCGGTCCGATTTTTTA
ATAAATGCTTCATGTACATATGCATGCGTCCAACGCTTTTTGTCTTGAAT
CAACCACCACTCTGCTCGAAATGAATCAACAACCAAACACAATCAACACG
AACGCAACACGGACGCGAAACCCCCTGGTCCCACATCCCCCAAGCGTCGT
CTTGCGAGGGTACCACGTGCGGGTGCTGGCGGCCCACAACGCCGAGGTGT
ACCTCAGGGCGGGCCTGGAGTCCATGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig821:14549..16026-

>mRNA_L-elsbetiae_contig821.17214.1 ID=mRNA_L-elsbetiae_contig821.17214.1|Name=mRNA_L-elsbetiae_contig821.17214.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig821:14549..16026- (Laminarionema elsbetiae ELsaHSoW15)
AAAGGCTGTGTCAGGAGGGGTGAGGCAAAGTTAGGGTTAGGGTTGGACGG
TGCGGGCACCTTCAGCCAATCAGTATACCCGTACGCCTTCTCCTGCTTCT
GTTTCGCCCGTGATTTGGGCCTTTGCAGGAGCATGTCAGGCACGCCAGGG
TCGGTGCCGCAGCTGAGGCTCGGTGGGCCGGGGGTGATGGCAGCATCGGT
TTCCGACGACTCGCCGCCTCCGCCACCGCGGCCTCCAAGAGCCAGAAAGG
CTGTGTCAGGAGGGGTGAGGCAAAGTTAGGGTTAGGGTTGGACGGTGCGG
GCACCTTCAGCCAATCAGTATACCCGTACGCCTTCTCCTGCTTCTGTTTC
GCCCGTGATTTGGGCCTTTGCAGGAGCATGTCAGGCACGCCAGGGTCGGT
GCCGCAGCTGAGGCTCGGTGGGCCGGGGGTGATGGCAGCATCGGTTTCCG
ACGACTCGCCGCCTCCGCCACCGCGGCCTCCAAGAGCCAGGTCGCTGTTG
ACCGTGTACCCCGTGCCCGACAAGCCGGTCGCTCTGGATGTCGTCAACTG
GCGCCGCATCCGCAAGAAGGAAGAGAGGTGGTTCTATGGCAAGCCGCAGC
CGAGGACGAACGTTCAGCGGTGCTACGGCCCGGAGCTGACGGAGCACCTC
ACCAGGAAGTCGCTGTTGACCGTGTACCCCGTGCCCGACAAGCCGGTCGC
TCTGGATGTCGTCAACTGGCGCCGCATCCGCAAGAAGGAAGAGAGGTGGT
TCTATGGCAAGCCGCAGCCGAGGACGAACGTTCAGCGGTGCTACGGCCCG
GAGCTGACGGAGCACCTCACCAGGAACGTCGTCTTGCGAGGGTACCACGT
GCGGGTGCTGGCGGCCCACAACGCCGAGGTGTACCTCAGGGCGGGCCTGG
AGTCCATGCGTCGTCTTGCGAGGGTACCACGTGCGGGTGCTGGCGGCCCA
CAACGCCGAGGTGTACCTCAGGGCGGGCCTGGAGTCCATG
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