mRNA_L-elsbetiae_contig8207.17211.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8207.17211.1
Unique NamemRNA_L-elsbetiae_contig8207.17211.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8207.17211.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.190e-21
Identity = 45/90 (50.00%), Postives = 64/90 (71.11%), Query Frame = 2 
Query:   11 QLAENWMIISLFLVSFIVGIFMFTAMAWLMLFRMEDLKECWELHVGILRYYVGLTVIGAAVNLTLGICGTLYVLANPDARLL-AWSWVFR 277
            Q + +W+ +S F + F+VGI MF  +AWL+LFR+ ++KECW++H  I RYY GLT+IG  VNL LG+CGT+YV+   +  LL   +W FR
Sbjct:   97 QRSGDWLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARI-RYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFR 185
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BLAST of mRNA_L-elsbetiae_contig8207.17211.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.390e-20
Identity = 48/96 (50.00%), Postives = 68/96 (70.83%), Query Frame = 2 
Query:   11 QLAEN-----WMIISLFLVSFIVGIFMFTAMAWLMLFRMEDLKECWELHVGILRYYVGLTVIGAAVNLTLGICGTLYVLANPDARLLA-WSWVFRS 280
            +L EN     +++IS F+V F+VGI MF  ++WL+LFRM ++KECW +H   LRYY GLT++G   NLTLG+CGT+YV+++    LL  +SW FR 
Sbjct:   92 ELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHA-CLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQ 186
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BLAST of mRNA_L-elsbetiae_contig8207.17211.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.040e-20
Identity = 41/83 (49.40%), Postives = 62/83 (74.70%), Query Frame = 2 
Query:   32 IISLFLVSFIVGIFMFTAMAWLMLFRMEDLKECWELHVGILRYYVGLTVIGAAVNLTLGICGTLYVLAN-PDARLLAWSWVFR 277
            ++S+F + FIVG+ MF  +AWL+LFR++++KECW +H  I RYY+ LTV+G  ++L++GIC T++VL      RL  W+WVFR
Sbjct:  127 VVSIFFLEFIVGLCMFVIVAWLLLFRLKEVKECWRIHARI-RYYLCLTVLGTGISLSIGICSTVFVLGGLKQTRLAIWAWVFR 208
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BLAST of mRNA_L-elsbetiae_contig8207.17211.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.740e-19
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 2 
Query:   23 NWMIISLFLVSFIVGIFMFTAMAWLMLFRMEDLKECWELHVGILRYYVGLTVIGAAVNLTLGICGTLYVL-ANPDARLLAWSWVFR 277
            +W+I+S+ ++ F+VGI MF  ++WLM FRM  +KECW+LH  I RYY  LTVIG AVNL LGI G  YV  AN    LL+ +W FR
Sbjct:  108 DWIIVSIIILEFVVGICMFIIVSWLMAFRMRAIKECWKLHARI-RYYFVLTVIGTAVNLALGISGFSYVFRANAGEYLLSLTWAFR 192
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BLAST of mRNA_L-elsbetiae_contig8207.17211.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 5.990e-19
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:   11 QLAENWMIISLFLVSFIVGIFMFTAMAWLMLFRMEDLKECWELHVGILRYYVGLTVIGAAVNLTLGICGTLYVLANPD 244
            Q   +W+ IS F + F VGI MF  +AWL+LFRM ++KECW++H  I RYY GLT+I   VNL LGICG +Y++ + +
Sbjct:  102 QRGSDWITISRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKMHARI-RYYFGLTLIATGVNLILGICGVIYLIGDRE 178
[Close]
BLAST of mRNA_L-elsbetiae_contig8207.17211.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.350e-18
Identity = 42/83 (50.60%), Postives = 61/83 (73.49%), Query Frame = 2 
Query:   32 IISLFLVSFIVGIFMFTAMAWLMLFRMEDLKECWELHVGILRYYVGLTVIGAAVNLTLGICGTLYVLANPDA-RLLAWSWVFR 277
            ++S+F + F+VGI MF  +AWL+LFRM+++KECW +   I RYY  LT++G AVN+ +GIC T++V+ + D  RL  WSWV R
Sbjct:  176 VVSIFFLEFMVGICMFVILAWLLLFRMKEVKECWRIDARI-RYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSR 257
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BLAST of mRNA_L-elsbetiae_contig8207.17211.1 vs. uniprot
Match: D8LNN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN7_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 3.370e-18
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 2 
Query:    5 PMQLAENWMIISLFLVSFIVGIFMFTAMAWLMLFRMEDLKECWELHVGILRYYVGLTVIGAAVNLTLGICGTLYVLANPDARLLA-WSWVFR 277
            P     +++I+S+++  FIVGI M   ++WL +FRM+++KECW++H  I RYY  LT++G AVNL LGICG  +V  +    LL  WSW+FR
Sbjct:   31 PDPAKYDFVIMSIYIFEFIVGICMLVIVSWLAMFRMKEMKECWKIHPRI-RYYFCLTLLGTAVNLGLGICGAAFVKGDRKQPLLQIWSWLFR 121
[Close]
BLAST of mRNA_L-elsbetiae_contig8207.17211.1 vs. uniprot
Match: A0A6H5KRY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY2_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 4.740e-18
Identity = 40/76 (52.63%), Postives = 54/76 (71.05%), Query Frame = 2 
Query:   23 NWMIISLFLVSFIVGIFMFTAMAWLMLFRMEDLKECWELHVGILRYYVGLTVIGAAVNLTLGICGTLYVLANPDAR 250
            +W ++S FL  FIVGI M   +AWL+LFRM+++KECW++H  I RYY GLT+I   VNL LGI GT+Y++     R
Sbjct:  101 DWSVVSRFLFEFIVGICMIAIVAWLLLFRMKEIKECWKVHTRI-RYYFGLTLIATGVNLVLGIFGTVYIVGEGQRR 175
[Close]
BLAST of mRNA_L-elsbetiae_contig8207.17211.1 vs. uniprot
Match: A0A6H5JZY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 8.310e-18
Identity = 39/78 (50.00%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:   11 QLAENWMIISLFLVSFIVGIFMFTAMAWLMLFRMEDLKECWELHVGILRYYVGLTVIGAAVNLTLGICGTLYVLANPD 244
            Q   +W+ +S F + F VGI MF  +AWL+LFRM ++KECW+ H  I RYY GLT+I   VNL LGICG +Y++ + +
Sbjct:  165 QRGSDWITVSRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKTHARI-RYYFGLTLIATGVNLILGICGVIYLIGDRE 241
[Close]
BLAST of mRNA_L-elsbetiae_contig8207.17211.1 vs. uniprot
Match: D8LNM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.030e-16
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:   26 WMIISLFLVSFIVGIFMFTAMAWLMLFRMEDLKECWELHVGILRYYVGLTVIGAAVNLTLGICGTLYVLANPDA 247
            W + S FL  FIVGI M   + WL+LFRM+++KECW++H  I RYY GLT+I  AVNL LGI GT+Y++    +
Sbjct:   59 WSVTSRFLFEFIVGICMIAIVTWLLLFRMKEIKECWKVHTRI-RYYFGLTLIATAVNLVLGIFGTVYIVGGRQS 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8207.17211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LNN1_ECTSI2.190e-2150.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LNP0_ECTSI2.390e-2050.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTK4_ECTSI5.040e-2049.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8K6_9PHAE3.740e-1954.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNM5_ECTSI5.990e-1951.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTK5_ECTSI1.350e-1850.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNN7_ECTSI3.370e-1846.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRY2_9PHAE4.740e-1852.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZY2_9PHAE8.310e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNM8_ECTSI1.030e-1652.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8207contigL-elsbetiae_contig8207:3793..5286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size302
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8207.17211.1prot_L-elsbetiae_contig8207.17211.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8207 3793..5286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.8780944-CDS-L-elsbetiae_contig8207:3792..38161622816904.8780944-CDS-L-elsbetiae_contig8207:3792..3816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8207 3793..3816 -
1691683901.3965955-CDS-L-elsbetiae_contig8207:3792..38161691683901.3965955-CDS-L-elsbetiae_contig8207:3792..3816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8207 3793..3816 -
1622816904.889031-CDS-L-elsbetiae_contig8207:4188..42211622816904.889031-CDS-L-elsbetiae_contig8207:4188..4221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8207 4189..4221 -
1691683901.4096308-CDS-L-elsbetiae_contig8207:4188..42211691683901.4096308-CDS-L-elsbetiae_contig8207:4188..4221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8207 4189..4221 -
1622816904.8994293-CDS-L-elsbetiae_contig8207:5043..52861622816904.8994293-CDS-L-elsbetiae_contig8207:5043..5286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8207 5044..5286 -
1691683901.4188685-CDS-L-elsbetiae_contig8207:5043..52861691683901.4188685-CDS-L-elsbetiae_contig8207:5043..5286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8207 5044..5286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8207.17211.1

>prot_L-elsbetiae_contig8207.17211.1 ID=prot_L-elsbetiae_contig8207.17211.1|Name=mRNA_L-elsbetiae_contig8207.17211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MANAACRKLDDNITVPGELHRWDLHVHRDGLADAVSDGGSQRVLGATRWH
SSLLRRPHRNWRGSKPDPWHLRHALCSRESGCTSTGLELGLQEQAKMAMT
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mRNA from alignment at L-elsbetiae_contig8207:3793..5286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8207.17211.1 ID=mRNA_L-elsbetiae_contig8207.17211.1|Name=mRNA_L-elsbetiae_contig8207.17211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig8207:3793..5286- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAATGCAGCTTGCCGAAAACTGGATGATAATATCACTGTTCCTGG
TGAGCTTCATCGTTGGGATCTTCATGTTCACCGCGATGGCCTGGCTGATG
CTGTTTCGGATGGAGGATCTCAAAGAGTGCTGGGAGCTACACGTTGGCAT
TCTTCGCTACTACGTCGGCCTCACCGTAATTGGCGCGGCAGTAAACCTGA
CCCTTGGCATTTGCGGCACGCTCTATGTTCTCGCGAATCCGGAGTGAGTG
GACGAACCAGCTAAGCCTTTCTACACATAATAATCGGGAAGTGTAGCGAG
GGGCAGAGAGGAGATGCGGAGGATAATCGTGGTTTACATGGTGCTACAGT
GTAGTACTAGTACACCTGCTGCGCCATCATGGGCTTGGGGGGTTGAAAGT
ACCCTTGAAAGTATGTCCTTGTCTCTCATCGAGATACTAAATAGAGAGTT
TCAGAGCGAAACTCAGTTTTCGAAAAGCAAGTTCGTGGAAAAATATACAG
TCGAACTGAGCAAGAGGGATACCAAATTTTCATGACTCAATGGCATGATG
GTTCGCTCCTTCTCCCGAAAATAGCGACAGATTTGAGGCAAATATCCCCC
TCTCTCAGGATACGGAATGCTGAACGGCCGTGCTGTGCGTGCTCGACTGC
CCCATGGGCCACTTCATTGATTGACATCGTCTCGGGAAAGCAAGCCGGCC
TGCCAAACTTGCTTGACCCCCCTCGAAAGCAACTTGCTCAAGAACACTGT
TCGGCCTGCGTATGTATAAAGTATGTGGTTGGAGGTGAAAAGACGACCGA
CACGCGAAGGCACGCCATTGACCAAAGCCATGATAGAAGAAGTGCTTCCT
CTTGCTGTGTACTTCTATATGCCGTTCCAAGCATGCGGGTAGTACGTGCG
TAGAGTGTGCTCGCCGGCGCGTAGACGCTACGCCGAGATGATGTGGCGCG
CTGGAACTCAAGGCTTGCTTCTGATGTGTGTTCGTCCCCGCCGTTATGCC
CCCGCCCCCGTCGTGTGGATCCGCTCCGCTCGCCGTACGCCTTCCAACAC
GATGGCGGCCCGAAGTGCACGTCTACTGGCCTGGAGCTGGGTCTTCAGGT
GGGTCCACGTTGCTCTGGACAACATTGTCCTGTTCAGCGTGCTTCAAGAG
AGGGGCATGGACGAACGCGGCAACGGCAACCGATTGCCTGGTGTGGTATC
CAACCAAACGTCCGAGAAGCGTATTGTGGTTGACGTGCCGGACTACTGCT
GAGTTGAGAGAGCGCACTGTCTCTGTCGCTGTACCACGTGGCTGTACCAC
GTGCTACTGGTAATTTGTCGTTATGTAGGCTAGTTTATACGTGAACGCGT
CCTTGATTTGTGAGGTTGGCGCAGCGAATGCAGTGTAGGTCCCTGTTGAA
GGCCGCATATTTAATTTAAGGCTGGTTGCCCTGTTTAAGGCCGCGAAGTC
GCTTCCCCAAATGTCTACAGGAGCAGGCTAAAATGGCGATGACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8207:3793..5286-

>mRNA_L-elsbetiae_contig8207.17211.1 ID=mRNA_L-elsbetiae_contig8207.17211.1|Name=mRNA_L-elsbetiae_contig8207.17211.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig8207:3793..5286- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAATGCAGCTTGCCGAAAACTGGATGATAATATCACTGTTCCTGG
TGAGCTTCATCGTTGGGATCTTCATGTTCACCGCGATGGCCTGGCTGATG
CTGTTTCGGATGGAGGATCTCAAAGAGTGCTGGGAGCTACACGTTGGCAT
TCTTCGCTACTACGTCGGCCTCACCGTAATTGGCGCGGCAGTAAACCTGA
CCCTTGGCATTTGCGGCACGCTCTATGTTCTCGCGAATCCGGAATGGCCA
ATGCAGCTTGCCGAAAACTGGATGATAATATCACTGTTCCTGGTGAGCTT
CATCGTTGGGATCTTCATGTTCACCGCGATGGCCTGGCTGATGCTGTTTC
GGATGGAGGATCTCAAAGAGTGCTGGGAGCTACACGTTGGCATTCTTCGC
TACTACGTCGGCCTCACCGTAATTGGCGCGGCAGTAAACCTGACCCTTGG
CATTTGCGGCACGCTCTATGTTCTCGCGAATCCGGATGCACGTCTACTGG
CCTGGAGCTGGGTCTTCAGTGCACGTCTACTGGCCTGGAGCTGGGTCTTC
AGGAGCAGGCTAAAATGGCGATGACCGAGCAGGCTAAAATGGCGATGACC
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