mRNA_L-elsbetiae_contig8205.17209.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8205.17209.1
Unique NamemRNA_L-elsbetiae_contig8205.17209.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8205.17209.1 vs. uniprot
Match: A0A6H5KTC8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTC8_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.190e-20
Identity = 51/99 (51.52%), Postives = 75/99 (75.76%), Query Frame = 2 
Query:  263 ERDEGMSSSNAHIEESPLLAQLRQAHSTALRGAAAKLGPEVLREYMKPIEGKVGDADPTALAVEAVARIVKRSEEAFEQLCERKSVNEKLLAMDRAKEE 559
            E+D   S  N   EE+ L+ ++RQAHS AL+ +A KL   VL + ++PI+GK+GDADP ALA + VA+++++SEE+FE+LC+R  VNEK LA++RA+EE
Sbjct:    2 EQDRRSSGPN---EEARLMVRMRQAHSMALKRSADKLTSHVLLKRVRPIQGKLGDADPAALAAQVVAQVIEKSEESFEKLCQRIRVNEKFLALERAREE 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8205.17209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTC8_9PHAE1.190e-2051.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8205contigL-elsbetiae_contig8205:2397..4188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001230.1
Exons3
Model size589
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8205.17209.1prot_L-elsbetiae_contig8205.17209.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8205 2397..3941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.7289178-CDS-L-elsbetiae_contig8205:2396..25011622816904.7289178-CDS-L-elsbetiae_contig8205:2396..2501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8205 2397..2501 -
1691683901.3016698-CDS-L-elsbetiae_contig8205:2396..25011691683901.3016698-CDS-L-elsbetiae_contig8205:2396..2501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8205 2397..2501 -
1622816904.7422218-CDS-L-elsbetiae_contig8205:2853..30031622816904.7422218-CDS-L-elsbetiae_contig8205:2853..3003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8205 2854..3003 -
1691683901.3124616-CDS-L-elsbetiae_contig8205:2853..30031691683901.3124616-CDS-L-elsbetiae_contig8205:2853..3003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8205 2854..3003 -
1622816904.755966-CDS-L-elsbetiae_contig8205:3854..39411622816904.755966-CDS-L-elsbetiae_contig8205:3854..3941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8205 3855..3941 -
1691683901.3229692-CDS-L-elsbetiae_contig8205:3854..39411691683901.3229692-CDS-L-elsbetiae_contig8205:3854..3941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8205 3855..3941 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.7671192-UTR-L-elsbetiae_contig8205:3941..41881622816904.7671192-UTR-L-elsbetiae_contig8205:3941..4188Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8205 3942..4188 -
1691683901.334031-UTR-L-elsbetiae_contig8205:3941..41881691683901.334031-UTR-L-elsbetiae_contig8205:3941..4188Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8205 3942..4188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8205.17209.1

>prot_L-elsbetiae_contig8205.17209.1 ID=prot_L-elsbetiae_contig8205.17209.1|Name=mRNA_L-elsbetiae_contig8205.17209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MASARERDEGMSSSNAHIEESPLLAQLRQAHSTALRGAAAKLGPEVLREY
MKPIEGKVGDADPTALAVEAVARIVKRSEEAFEQLCERKSVNEKLLAMDR
AKEEIKLRAQPQQQ
back to top

mRNA from alignment at L-elsbetiae_contig8205:2397..4188-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8205.17209.1 ID=mRNA_L-elsbetiae_contig8205.17209.1|Name=mRNA_L-elsbetiae_contig8205.17209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1792bp|location=Sequence derived from alignment at L-elsbetiae_contig8205:2397..4188- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTCTGGCTGGCAACGACACAAACCAAACGCACGGCGTTCCTGGCTAC
TACCGCCGACTGAAATCCCGCCCACGCGGTTTACAAAGTGTCCGACGTCC
TCCAGGAGTAAAGAGGAGAGGAAAGAGTAATTCAACGCTTGGCGTTTGAA
TTCCTACACAGCTTTGCGTGCGGGCGAGGCCTCCTTCGTTCTGCGTTGTT
GGAGCCGCAGGACGCGCGGTAGCTGGCACTGGCTTCCTGATTTCGAGATG
GCTTCAGCTCGAGAACGCGACGAGGGAATGTCGAGCTCGAACGCCCACAT
TGAAGAATCCCCGCTGCTGGCCCAATTGAGGCAGGTCAGTTGCCACTCCC
GGTGGCCGATTTTTGAATTATTTTTCTCAGAGATTTTAGGCCGCCTGCAG
CAGCAGCATAGGGTCCCGTGGTGCTCGATGGGTGCCGTTGCATGCGCAAG
AAATATAGAAAGCCACACACACGTTGATCGACCGGTAACGCCCTCACGCG
CCGTCGTTTCTCTCTCTCCATTCTCCACGCGTTTTCGTGCCTGCATGTCA
CGTTTTGAGTATACCATCCACCCCGCCGCCCGCGCTTCTCTCCTTCTTCC
TTGGGCGATCACGCGGTAATTTAGCACACTTACCGTAGATACCGTAGATC
GCACCGAAGCGCAACCTTTCCGAATGCTGCTTACAAGCGTATACTTAAGA
TTGCCTCTGGGGCAGCCGGTACGCCGTCATGATGGCATGAGGCGTTCAGA
TTGTTCGGCAGCGGCGTATCTATCTAGATAAGTCTATTAATTAACCAGTA
TACCTACAGAGTACAGAGTACAGGACCACGGCTGTGAGAGAGTCACTGCT
GCCTGTACACAGCAGTCACGTCTCTCTTCCATCATTTTCGCAAACGCGTG
CGGCACGTAGATCCTAGGCTGTGTAGCACCCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCACCGATGTGT
TCGTGTCGTCTTCCACCCTTCGCACAAGCCCCGATCCAAATGAGAAAAAG
CCCAGCCTGCGCCCAGCAACCCCCCCCCCCCCTGCGCCCTCACCCCATCG
CCGCCGACTGCCGACTGCCGATTGCCGACCCTCTCGCGGGGCCAACGCAC
ATTTTTTGCGATCGGCCGCGGCAATCGCACACCAGGCGCACTCGACTGCC
TTGCGCGGGGCGGCGGCGAAGCTAGGGCCGGAGGTGCTGCGGGAGTACAT
GAAGCCGATCGAGGGGAAGGTCGGGGACGCCGACCCCACCGCGCTTGCCG
TCGAAGCTGTAGCTCGGATCGTGAAGAGGTCGGAGGTACGATGCGGGGGG
GCCGTGTTTCATGGTGGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCCTGGTGGTGGTGTTGTGGCTGCTGTCGC
CAGTGTAACTCAGCTGTGGTTGGTCGTCGTCTTTGCTGTGCTGTGCTTTG
CTGTGCGTTGCTTTGTCGATGTAGACACGGCGAGTTTGTTTGTCGCCGTC
ACTGCTGCTGCTGCTGATAATCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCCGTTGTGTGCGTATTTGTCTGCTGCCGTGT
GCCTGCTGTTGTCTGTGTCTCTGCCGCGTTTTTGAAGGAGGCGTTTGAGC
AGCTGTGCGAACGGAAGTCCGTGAACGAGAAGCTCCTTGCCATGGATAGA
GCAAAAGAGGAGATAAAGCTGCGAGCGCAGCCGCAGCAGCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8205:2397..4188-

>mRNA_L-elsbetiae_contig8205.17209.1 ID=mRNA_L-elsbetiae_contig8205.17209.1|Name=mRNA_L-elsbetiae_contig8205.17209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig8205:2397..4188- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTCAGCTCGAGAACGCGACGAGGGAATGTCGAGCTCGAACGCCCA
CATTGAAGAATCCCCGCTGCTGGCCCAATTGAGGCAGATGGCTTCAGCTC
GAGAACGCGACGAGGGAATGTCGAGCTCGAACGCCCACATTGAAGAATCC
CCGCTGCTGGCCCAATTGAGGCAGGCGCACTCGACTGCCTTGCGCGGGGC
GGCGGCGAAGCTAGGGCCGGAGGTGCTGCGGGAGTACATGAAGCCGATCG
AGGGGAAGGTCGGGGACGCCGACCCCACCGCGCTTGCCGTCGAAGCTGTA
GCTCGGATCGTGAAGAGGTCGGAGGCGCACTCGACTGCCTTGCGCGGGGC
GGCGGCGAAGCTAGGGCCGGAGGTGCTGCGGGAGTACATGAAGCCGATCG
AGGGGAAGGTCGGGGACGCCGACCCCACCGCGCTTGCCGTCGAAGCTGTA
GCTCGGATCGTGAAGAGGTCGGAGGAGGCGTTTGAGCAGCTGTGCGAACG
GAAGTCCGTGAACGAGAAGCTCCTTGCCATGGATAGAGCAAAAGAGGAGA
TAAAGCTGCGAGCGCAGCCGCAGCAGCAGGAGGCGTTTGAGCAGCTGTGC
GAACGGAAGTCCGTGAACGAGAAGCTCCTTGCCATGGATAGAGCAAAAGA
GGAGATAAAGCTGCGAGCGCAGCCGCAGCAGCAG
back to top