mRNA_L-elsbetiae_contig8202.17206.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8202.17206.1
Unique NamemRNA_L-elsbetiae_contig8202.17206.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8202.17206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8202contigL-elsbetiae_contig8202:7984..8703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size720
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8202.17206.1prot_L-elsbetiae_contig8202.17206.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8202 8011..8541 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.5830986-UTR-L-elsbetiae_contig8202:7983..80101622816904.5830986-UTR-L-elsbetiae_contig8202:7983..8010Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8202 7984..8010 +
1691683901.2029386-UTR-L-elsbetiae_contig8202:7983..80101691683901.2029386-UTR-L-elsbetiae_contig8202:7983..8010Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8202 7984..8010 +
1622816904.6041193-UTR-L-elsbetiae_contig8202:8541..87031622816904.6041193-UTR-L-elsbetiae_contig8202:8541..8703Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8202 8542..8703 +
1691683901.2285461-UTR-L-elsbetiae_contig8202:8541..87031691683901.2285461-UTR-L-elsbetiae_contig8202:8541..8703Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8202 8542..8703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.593171-CDS-L-elsbetiae_contig8202:8010..85411622816904.593171-CDS-L-elsbetiae_contig8202:8010..8541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8202 8011..8541 +
1691683901.216285-CDS-L-elsbetiae_contig8202:8010..85411691683901.216285-CDS-L-elsbetiae_contig8202:8010..8541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8202 8011..8541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8202.17206.1

>prot_L-elsbetiae_contig8202.17206.1 ID=prot_L-elsbetiae_contig8202.17206.1|Name=mRNA_L-elsbetiae_contig8202.17206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MVFKTNILPACLHADISTQPASANDAPFMFGESLAWLKIPRVTQPPSLPN
ISLLPPRTPDTQNQEQNAGLAQTAPCSPLPLPHRLRFTSTFAPRDTTAVV
IHAIYAAEKKSQPTYIYPPSPLLAPRRHPACSAIASCSARGHAHYSVQDS
AGGVRRLLCRYECGNPGGGGGGDRRP*
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mRNA from alignment at L-elsbetiae_contig8202:7984..8703+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8202.17206.1 ID=mRNA_L-elsbetiae_contig8202.17206.1|Name=mRNA_L-elsbetiae_contig8202.17206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig8202:7984..8703+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTTCACCGATCTCAACAACACAACCATGGTATTCAAAACCAACATTTT
ACCCGCCTGCCTTCATGCAGACATTTCAACCCAGCCCGCCTCCGCTAATG
ATGCCCCTTTTATGTTCGGGGAAAGTTTGGCTTGGCTCAAAATCCCCCGT
GTGACCCAACCACCTTCTTTACCGAATATTTCTCTTCTCCCTCCGCGCAC
ACCAGACACGCAAAACCAAGAACAAAACGCAGGGCTCGCCCAGACGGCGC
CCTGCTCCCCTCTCCCTCTGCCCCACCGGCTGAGATTTACTTCCACCTTT
GCGCCTCGGGACACAACAGCAGTGGTAATCCATGCTATTTATGCGGCAGA
AAAAAAGAGCCAACCGACCTACATATACCCCCCGTCCCCTCTTCTTGCAC
CCCGCCGCCACCCAGCCTGCTCCGCTATCGCCTCCTGTTCTGCAAGAGGG
CACGCGCACTACTCTGTGCAGGACTCTGCTGGAGGCGTTCGTCGCCTATT
ATGTAGGTACGAGTGTGGAAACCCGGGGGGGGGAGGGGGGGGGGATCGAC
GACCGTAGTCAACACACCGGCAGGCCCGGCTTTTCCCCCTTGATATATAA
GTATGTATCATGGCCCCGCGAAAGAAAGCAAAGAAAGGCGAGGTCGATTC
GATTCAGTTCGATGCGCGCCCTGTGACTTAAAACACAAAAAAAGAAAAAA
AACGTTCATAAAATGTTCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8202:7984..8703+

>mRNA_L-elsbetiae_contig8202.17206.1 ID=mRNA_L-elsbetiae_contig8202.17206.1|Name=mRNA_L-elsbetiae_contig8202.17206.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig8202:7984..8703+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTATTCAAAACCAACATTTTACCCGCCTGCCTTCATGCAGACATTTC
AACCCAGCCCGCCTCCGCTAATGATGCCCCTTTTATGTTCGGGGAAAGTT
TGGCTTGGCTCAAAATCCCCCGTGTGACCCAACCACCTTCTTTACCGAAT
ATTTCTCTTCTCCCTCCGCGCACACCAGACACGCAAAACCAAGAACAAAA
CGCAGGGCTCGCCCAGACGGCGCCCTGCTCCCCTCTCCCTCTGCCCCACC
GGCTGAGATTTACTTCCACCTTTGCGCCTCGGGACACAACAGCAGTGGTA
ATCCATGCTATTTATGCGGCAGAAAAAAAGAGCCAACCGACCTACATATA
CCCCCCGTCCCCTCTTCTTGCACCCCGCCGCCACCCAGCCTGCTCCGCTA
TCGCCTCCTGTTCTGCAAGAGGGCACGCGCACTACTCTGTGCAGGACTCT
GCTGGAGGCGTTCGTCGCCTATTATGTAGGTACGAGTGTGGAAACCCGGG
GGGGGGAGGGGGGGGGGATCGACGACCGTAGATGGTATTCAAAACCAACA
TTTTACCCGCCTGCCTTCATGCAGACATTTCAACCCAGCCCGCCTCCGCT
AATGATGCCCCTTTTATGTTCGGGGAAAGTTTGGCTTGGCTCAAAATCCC
CCGTGTGACCCAACCACCTTCTTTACCGAATATTTCTCTTCTCCCTCCGC
GCACACCAGACACGCAAAACCAAGAACAAAACGCAGGGCTCGCCCAGACG
GCGCCCTGCTCCCCTCTCCCTCTGCCCCACCGGCTGAGATTTACTTCCAC
CTTTGCGCCTCGGGACACAACAGCAGTGGTAATCCATGCTATTTATGCGG
CAGAAAAAAAGAGCCAACCGACCTACATATACCCCCCGTCCCCTCTTCTT
GCACCCCGCCGCCACCCAGCCTGCTCCGCTATCGCCTCCTGTTCTGCAAG
AGGGCACGCGCACTACTCTGTGCAGGACTCTGCTGGAGGCGTTCGTCGCC
TATTATGTAGGTACGAGTGTGGAAACCCGGGGGGGGGAGGGGGGGGGGAT
CGACGACCGTAG
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