mRNA_L-elsbetiae_contig820.17202.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig820.17202.1
Unique NamemRNA_L-elsbetiae_contig820.17202.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig820.17202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig820contigL-elsbetiae_contig820:11592..14558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons4
Model size1940
Cds size975
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig820.17202.1prot_L-elsbetiae_contig820.17202.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig820 12268..13744 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.1345634-UTR-L-elsbetiae_contig820:11591..117001622816904.1345634-UTR-L-elsbetiae_contig820:11591..11700Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 11592..11700 +
1691683900.8194714-UTR-L-elsbetiae_contig820:11591..117001691683900.8194714-UTR-L-elsbetiae_contig820:11591..11700Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 11592..11700 +
1622816904.1452491-UTR-L-elsbetiae_contig820:12207..122671622816904.1452491-UTR-L-elsbetiae_contig820:12207..12267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 12208..12267 +
1691683900.8342772-UTR-L-elsbetiae_contig820:12207..122671691683900.8342772-UTR-L-elsbetiae_contig820:12207..12267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 12208..12267 +
1622816904.1794703-UTR-L-elsbetiae_contig820:13744..138421622816904.1794703-UTR-L-elsbetiae_contig820:13744..13842Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 13745..13842 +
1691683900.866724-UTR-L-elsbetiae_contig820:13744..138421691683900.866724-UTR-L-elsbetiae_contig820:13744..13842Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 13745..13842 +
1622816904.189567-UTR-L-elsbetiae_contig820:13860..145581622816904.189567-UTR-L-elsbetiae_contig820:13860..14558Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 13861..14558 +
1691683900.87837-UTR-L-elsbetiae_contig820:13860..145581691683900.87837-UTR-L-elsbetiae_contig820:13860..14558Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig820 13861..14558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.156289-CDS-L-elsbetiae_contig820:12267..123611622816904.156289-CDS-L-elsbetiae_contig820:12267..12361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig820 12268..12361 +
1691683900.844719-CDS-L-elsbetiae_contig820:12267..123611691683900.844719-CDS-L-elsbetiae_contig820:12267..12361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig820 12268..12361 +
1622816904.1692595-CDS-L-elsbetiae_contig820:12863..137441622816904.1692595-CDS-L-elsbetiae_contig820:12863..13744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig820 12864..13744 +
1691683900.855222-CDS-L-elsbetiae_contig820:12863..137441691683900.855222-CDS-L-elsbetiae_contig820:12863..13744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig820 12864..13744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig820.17202.1

>prot_L-elsbetiae_contig820.17202.1 ID=prot_L-elsbetiae_contig820.17202.1|Name=mRNA_L-elsbetiae_contig820.17202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=325bp
MHLRPESSPRTGEARAPLTALDSAPSRPGASGRSTGSTCLCVLETVLAAV
VFACTALDLAIETHAHVEADDHGGLVYEASLLILVVALMLTDGACGIVLF
TTGCAVRTGLNHSFGRPSSSSPQAAAISSGPLPRGDMDRLERDRLTESLE
LDGVNLFDFREVVTTSVSVLLGVSSCLLLQLVSVVISLPFSLFFMYSISS
SSDNNGARDGEDGDDAESVFVWLVFVAVGLAVFTRLFHKLGVGGKFRNLE
QACRTQPSCRRVRGVLVLSSAAYAVVLCLSPVPPVWLWSLVVTHAARALK
LFVSLRDQSEAMGAAADDVPRDTL*
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mRNA from alignment at L-elsbetiae_contig820:11592..14558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig820.17202.1 ID=mRNA_L-elsbetiae_contig820.17202.1|Name=mRNA_L-elsbetiae_contig820.17202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2967bp|location=Sequence derived from alignment at L-elsbetiae_contig820:11592..14558+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCTTCGACGCCTCCAAGTTTGGCCTCAAACCTCTACATAGGAACCC
CATACATCTTGTGTGGGGGGCGGAAGAGAGAGAGAGAGGCCCTGGACTGA
GAGGGGAAGGTGTGCGATGTGTTCCAAGAAATGTGTCTTTTGTGATGGAT
TAGGACACATACATGTAGACTGACTACATATCTATGTGATTACTCCGGTA
CGCAGTGCGCAGGTGGAGTGTGCCTGGGTGTGTGCCTGGGTGTGGCGTCA
GCTGGTGTACATTTATACATGATATTGTGTGCGCCGTAATGCTGCCAAGA
GACAACAACGAAGAGGCGGAGTTTCTCTCTATGGTACAAGTAGCAGGTTT
GGTTATGATGACGTGCGGCTCGCAAGAGGGAGGGTTTCCTCCCAATTGAA
TATGCAGCCAAGAAGAATAAAAAATAGGACTTGGGGCTGACAAGCGGTAA
AGCGACGACCTGCCGAACACGGAAGCTGATTATCGCATTATATAATTCAT
CCGACGTTGTCGCCCCGATCTTTGAAATCCTTCCGAATTTAGTCCGCCAA
AAACCTCTGCTGTTCTTCCACTGTTGCCGGTCGGTGCTCCTGTTCGTCGT
GCTGTCGTTCTCGCAGGTGACGATCTAAGTCTATCTATCGTTCGGGGCAC
CCTCGCTCTCCTCAGTTGTTCGAAGTATGCATCTTCGACCTGAGTCATCG
CCGCGTACAGGCGAAGCTCGTGCGCCCCTTACAGCTCTGGATTCGGCTCC
TTCGCGGCCGGGGGCCTCCGGTACGTGTCATATGTAGGTACCTATCTATG
TGCCCATAGTCTATCTATGTAGGGTCGTTGACACAAAGGCGGCGATATGA
TACATTCTGAGAAAGCACGATCACTACTGGTCTGCCAGTCGCTGGTAGAT
AGACCAGTGATCATACTGGTGGACCCGTGGACATGGTGTTTTCTCGACAT
AGATATTACAGCAGGAGGGTTCAGCACAGGGTTCAGCTGGCAAGGGGGTG
GAAATGTGTCGAACTCCCGGAACTTACCCCCATTAAGTAAGTGAGAATGG
TCCAGTGAGGCAGATGTTTTTCATGCTATCTCCTGGTCGGGCGCTACCTA
GCTATGTACGCATGTACCCGCGGGCGTAAAGATGGAGGTGCATGATGAAA
ACACGAACCCCCAATAATTAAGTTACTCTTGGTGAGAGCTGAGATGTGCG
CAAGTCCTGATAACGCGCCCCCCCCCTGGTCAACTGTTGTTTTGTTCTAT
GTCGTGTTGAATCTATTACCAGGTCGAAGCACCGGGAGCACGTGCTTGTG
CGTTCTGGAGACTGTCCTGGCCGCGGTCGTGTTCGCGTGCACGGCCCTCG
ACCTCGCGATCGAGACTCACGCACACGTCGAGGCCGACGACCACGGAGGC
TTGGTATATGAGGCTTCCCTTCTCATTCTCGTCGTGGCACTGATGCTGAC
AGACGGGGCTTGTGGCATCGTGCTTTTCACAACTGGCTGCGCGGTACGGA
CTGGGTTGAACCACAGCTTTGGCAGGCCGAGCAGCAGCAGCCCGCAGGCA
GCGGCAATAAGTAGTGGTCCTCTTCCAAGAGGAGATATGGATCGCTTGGA
GCGCGACAGGCTGACGGAGTCTCTCGAGCTCGACGGCGTGAACCTCTTCG
ATTTCCGCGAGGTTGTGACGACCTCCGTGAGCGTCTTGTTGGGGGTTTCT
TCGTGCCTCTTGTTGCAGCTAGTCTCGGTGGTGATTTCCCTTCCGTTTAG
CCTCTTCTTCATGTACAGCATCAGCAGCAGCAGCGATAATAATGGCGCAA
GAGATGGCGAGGACGGCGATGATGCAGAGAGCGTGTTTGTCTGGCTCGTT
TTCGTCGCCGTGGGGTTGGCTGTCTTCACGCGCCTGTTCCACAAGCTCGG
CGTTGGTGGCAAGTTCAGAAACCTGGAGCAGGCGTGCCGTACCCAGCCCA
GCTGCAGGCGCGTGAGAGGCGTGCTCGTGCTGTCTAGCGCCGCCTACGCG
GTCGTCTTGTGCCTCTCTCCGGTCCCTCCCGTGTGGCTGTGGAGCCTGGT
CGTGACGCACGCCGCGAGAGCGCTTAAGCTCTTCGTGTCCCTCCGCGATC
AGAGTGAAGCCATGGGGGCGGCTGCGGATGATGTCCCTCGAGACACTCTT
TAATGAAGGCTGGTGTCCCCGTCGTGGTGGTGGAGATTTCAGAACCGCAG
TGCTGCAGACGTTCGTTACACCGCCGTGTTGGACCTTCGGTTTGGGGCAA
CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTTGGG
AAAGGCAAGCACCCCCCGGCGTATAGTTTTGTGTATGTGTGCCCGGAATC
GCCTGTCTTGTCTATTCGTAATCATCTGGGCTACTGGCAAAGGCTGGCCG
GCGACGTATCCGTAGTTCTCATTGCAGCAGTAATAGTGCGAGATTATTTG
GGTGCTGGACACTGTGTTGCTGTACAACGTGCCTAGGTAGTCTATAATCG
GGAGGTTTGGCGCTGCAGCAGTAGAGAACAAAATGTGCAACTTGGCTTCT
ATAATACATAGCTCGGGTCGAAGCTCCGATTGGTGTTTGATTCAGTGTTT
GATTCTCATTAGTGTTCATAATACGTCAGCGGCCTTCATAAGTTTGGGTC
GTCTAGCTGGTCGTATATCTAGTGTAGTATCTGGGGGCCAGTGGGGCAGA
GGACGAAAAAGCCAATCATGTTACAGGCCCTTTACGGGTAGTTTGGGGAG
AATGGTGGGGAGGAGCTTTGCATATCTTCGGCTACTGCACTGCTTCGAGT
ATTATGTGTTATATTGGTGCTCAAGAGAACTCGGAGCGCGATATATATGT
AGACTACACGTACGTATGTGTAGCTTTATTGGAAGGCTGTCTGTCCATGT
GATTCGTGTTGCACATTTTTTACTAACGTTTCTCCATGTATAGAATGTGT
TCCCCCTTCAACGACTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig820:11592..14558+

>mRNA_L-elsbetiae_contig820.17202.1 ID=mRNA_L-elsbetiae_contig820.17202.1|Name=mRNA_L-elsbetiae_contig820.17202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1950bp|location=Sequence derived from alignment at L-elsbetiae_contig820:11592..14558+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATCTTCGACCTGAGTCATCGCCGCGTACAGGCGAAGCTCGTGCGCC
CCTTACAGCTCTGGATTCGGCTCCTTCGCGGCCGGGGGCCTCCGATGCAT
CTTCGACCTGAGTCATCGCCGCGTACAGGCGAAGCTCGTGCGCCCCTTAC
AGCTCTGGATTCGGCTCCTTCGCGGCCGGGGGCCTCCGGTCGAAGCACCG
GGAGCACGTGCTTGTGCGTTCTGGAGACTGTCCTGGCCGCGGTCGTGTTC
GCGTGCACGGCCCTCGACCTCGCGATCGAGACTCACGCACACGTCGAGGC
CGACGACCACGGAGGCTTGGTATATGAGGCTTCCCTTCTCATTCTCGTCG
TGGCACTGATGCTGACAGACGGGGCTTGTGGCATCGTGCTTTTCACAACT
GGCTGCGCGGTACGGACTGGGTTGAACCACAGCTTTGGCAGGCCGAGCAG
CAGCAGCCCGCAGGCAGCGGCAATAAGTAGTGGTCCTCTTCCAAGAGGAG
ATATGGATCGCTTGGAGCGCGACAGGCTGACGGAGTCTCTCGAGCTCGAC
GGCGTGAACCTCTTCGATTTCCGCGAGGTTGTGACGACCTCCGTGAGCGT
CTTGTTGGGGGTTTCTTCGTGCCTCTTGTTGCAGCTAGTCTCGGTGGTGA
TTTCCCTTCCGTTTAGCCTCTTCTTCATGTACAGCATCAGCAGCAGCAGC
GATAATAATGGCGCAAGAGATGGCGAGGACGGCGATGATGCAGAGAGCGT
GTTTGTCTGGCTCGTTTTCGTCGCCGTGGGGTTGGCTGTCTTCACGCGCC
TGTTCCACAAGCTCGGCGTTGGTGGCAAGTTCAGAAACCTGGAGCAGGCG
TGCCGTACCCAGCCCAGCTGCAGGCGCGTGAGAGGCGTGCTCGTGCTGTC
TAGCGCCGCCTACGCGGTCGTCTTGTGCCTCTCTCCGGTCCCTCCCGTGT
GGCTGTGGAGCCTGGTCGTGACGCACGCCGCGAGAGCGCTTAAGCTCTTC
GTGTCCCTCCGCGATCAGAGTGAAGCCATGGGGGCGGCTGCGGATGATGT
CCCTCGAGACACTCTTTAAGTCGAAGCACCGGGAGCACGTGCTTGTGCGT
TCTGGAGACTGTCCTGGCCGCGGTCGTGTTCGCGTGCACGGCCCTCGACC
TCGCGATCGAGACTCACGCACACGTCGAGGCCGACGACCACGGAGGCTTG
GTATATGAGGCTTCCCTTCTCATTCTCGTCGTGGCACTGATGCTGACAGA
CGGGGCTTGTGGCATCGTGCTTTTCACAACTGGCTGCGCGGTACGGACTG
GGTTGAACCACAGCTTTGGCAGGCCGAGCAGCAGCAGCCCGCAGGCAGCG
GCAATAAGTAGTGGTCCTCTTCCAAGAGGAGATATGGATCGCTTGGAGCG
CGACAGGCTGACGGAGTCTCTCGAGCTCGACGGCGTGAACCTCTTCGATT
TCCGCGAGGTTGTGACGACCTCCGTGAGCGTCTTGTTGGGGGTTTCTTCG
TGCCTCTTGTTGCAGCTAGTCTCGGTGGTGATTTCCCTTCCGTTTAGCCT
CTTCTTCATGTACAGCATCAGCAGCAGCAGCGATAATAATGGCGCAAGAG
ATGGCGAGGACGGCGATGATGCAGAGAGCGTGTTTGTCTGGCTCGTTTTC
GTCGCCGTGGGGTTGGCTGTCTTCACGCGCCTGTTCCACAAGCTCGGCGT
TGGTGGCAAGTTCAGAAACCTGGAGCAGGCGTGCCGTACCCAGCCCAGCT
GCAGGCGCGTGAGAGGCGTGCTCGTGCTGTCTAGCGCCGCCTACGCGGTC
GTCTTGTGCCTCTCTCCGGTCCCTCCCGTGTGGCTGTGGAGCCTGGTCGT
GACGCACGCCGCGAGAGCGCTTAAGCTCTTCGTGTCCCTCCGCGATCAGA
GTGAAGCCATGGGGGCGGCTGCGGATGATGTCCCTCGAGACACTCTTTAA
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