mRNA_L-elsbetiae_contig8197.17191.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8197.17191.1
Unique NamemRNA_L-elsbetiae_contig8197.17191.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8197.17191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8197contigL-elsbetiae_contig8197:2957..3689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size733
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8197.17191.1prot_L-elsbetiae_contig8197.17191.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8197 2970..3398 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816903.1467986-UTR-L-elsbetiae_contig8197:2956..29691622816903.1467986-UTR-L-elsbetiae_contig8197:2956..2969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8197 2957..2969 +
1691683900.0183473-UTR-L-elsbetiae_contig8197:2956..29691691683900.0183473-UTR-L-elsbetiae_contig8197:2956..2969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8197 2957..2969 +
1622816903.1694822-UTR-L-elsbetiae_contig8197:3398..36891622816903.1694822-UTR-L-elsbetiae_contig8197:3398..3689Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8197 3399..3689 +
1691683900.0406978-UTR-L-elsbetiae_contig8197:3398..36891691683900.0406978-UTR-L-elsbetiae_contig8197:3398..3689Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8197 3399..3689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816903.1576865-CDS-L-elsbetiae_contig8197:2969..33981622816903.1576865-CDS-L-elsbetiae_contig8197:2969..3398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8197 2970..3398 +
1691683900.029058-CDS-L-elsbetiae_contig8197:2969..33981691683900.029058-CDS-L-elsbetiae_contig8197:2969..3398Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8197 2970..3398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8197.17191.1

>prot_L-elsbetiae_contig8197.17191.1 ID=prot_L-elsbetiae_contig8197.17191.1|Name=mRNA_L-elsbetiae_contig8197.17191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MPNRPRTKQDTIRRFFTGTPKRRWLATCLLFRQTKKPNSNNIHASHVATL
LSPQTLDKPDRQDTQAPRRNVRHSKGFPQHQQQTNLLDVLRVVARNSHHF
LHSACLAPDSHTTDRPPTKLSSSLLSLVCLAHQCQFENIQAS*
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mRNA from alignment at L-elsbetiae_contig8197:2957..3689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8197.17191.1 ID=mRNA_L-elsbetiae_contig8197.17191.1|Name=mRNA_L-elsbetiae_contig8197.17191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=733bp|location=Sequence derived from alignment at L-elsbetiae_contig8197:2957..3689+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCTTGCCCGGATGCCGAATAGACCACGAACAAAACAAGATACCATAC
GGCGCTTCTTCACGGGAACTCCGAAAAGACGATGGCTTGCCACATGCCTG
CTTTTCCGACAGACCAAGAAGCCGAACAGCAACAACATCCACGCCAGCCA
CGTTGCAACCCTCCTCTCCCCTCAGACCCTCGACAAACCGGACAGACAAG
ACACACAAGCGCCACGAAGAAATGTGCGGCACTCAAAGGGATTTCCACAA
CACCAACAACAAACTAATCTCTTGGATGTACTTCGTGTTGTTGCACGGAA
CAGTCATCACTTCCTTCATTCTGCCTGCCTAGCCCCAGACAGTCACACAA
CAGACAGACCACCCACTAAACTGTCTTCCTCACTTCTTTCTCTTGTGTGT
CTTGCACACCAGTGCCAGTTTGAAAACATACAGGCCAGTTGAAAAAAAAA
TACTGGCGCTTGGGAAGGAATGTCTTAGACAGCAAAATAAATCCGTTTTA
TTTTCAAAATGGTCTCGCTTTTCGTAAAAAGGCGCTTCCAAAATAGACGA
GGCACAAGGTACGTAGAAAAAAAATTACTTCTGATCTCGGCACAAGTGAG
CACCTCCTTCAGGGTTGGTTGCTGCCACAAGGGTTGGACGACTTCCTTCC
TGCCCTCCCTAACTCATTCACTAACTGCCGAAGAACACGAAACGCGGCCT
ACTAAAAACTGTGTCTGCAACCCAGAGAGAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8197:2957..3689+

>mRNA_L-elsbetiae_contig8197.17191.1 ID=mRNA_L-elsbetiae_contig8197.17191.1|Name=mRNA_L-elsbetiae_contig8197.17191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig8197:2957..3689+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGAATAGACCACGAACAAAACAAGATACCATACGGCGCTTCTTCAC
GGGAACTCCGAAAAGACGATGGCTTGCCACATGCCTGCTTTTCCGACAGA
CCAAGAAGCCGAACAGCAACAACATCCACGCCAGCCACGTTGCAACCCTC
CTCTCCCCTCAGACCCTCGACAAACCGGACAGACAAGACACACAAGCGCC
ACGAAGAAATGTGCGGCACTCAAAGGGATTTCCACAACACCAACAACAAA
CTAATCTCTTGGATGTACTTCGTGTTGTTGCACGGAACAGTCATCACTTC
CTTCATTCTGCCTGCCTAGCCCCAGACAGTCACACAACAGACAGACCACC
CACTAAACTGTCTTCCTCACTTCTTTCTCTTGTGTGTCTTGCACACCAGT
GCCAGTTTGAAAACATACAGGCCAGTTGAATGCCGAATAGACCACGAACA
AAACAAGATACCATACGGCGCTTCTTCACGGGAACTCCGAAAAGACGATG
GCTTGCCACATGCCTGCTTTTCCGACAGACCAAGAAGCCGAACAGCAACA
ACATCCACGCCAGCCACGTTGCAACCCTCCTCTCCCCTCAGACCCTCGAC
AAACCGGACAGACAAGACACACAAGCGCCACGAAGAAATGTGCGGCACTC
AAAGGGATTTCCACAACACCAACAACAAACTAATCTCTTGGATGTACTTC
GTGTTGTTGCACGGAACAGTCATCACTTCCTTCATTCTGCCTGCCTAGCC
CCAGACAGTCACACAACAGACAGACCACCCACTAAACTGTCTTCCTCACT
TCTTTCTCTTGTGTGTCTTGCACACCAGTGCCAGTTTGAAAACATACAGG
CCAGTTGA
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