mRNA_L-elsbetiae_contig8197.17190.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8197.17190.1
Unique NamemRNA_L-elsbetiae_contig8197.17190.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8197.17190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8197contigL-elsbetiae_contig8197:1991..2634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size644
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8197.17190.1prot_L-elsbetiae_contig8197.17190.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8197 2049..2540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816903.090951-UTR-L-elsbetiae_contig8197:1990..20481622816903.090951-UTR-L-elsbetiae_contig8197:1990..2048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8197 1991..2048 +
1691683899.9829464-UTR-L-elsbetiae_contig8197:1990..20481691683899.9829464-UTR-L-elsbetiae_contig8197:1990..2048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8197 1991..2048 +
1622816903.118098-UTR-L-elsbetiae_contig8197:2540..26341622816903.118098-UTR-L-elsbetiae_contig8197:2540..2634Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8197 2541..2634 +
1691683900.0068567-UTR-L-elsbetiae_contig8197:2540..26341691683900.0068567-UTR-L-elsbetiae_contig8197:2540..2634Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8197 2541..2634 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816903.1040351-CDS-L-elsbetiae_contig8197:2048..25401622816903.1040351-CDS-L-elsbetiae_contig8197:2048..2540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8197 2049..2540 +
1691683899.995359-CDS-L-elsbetiae_contig8197:2048..25401691683899.995359-CDS-L-elsbetiae_contig8197:2048..2540Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8197 2049..2540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8197.17190.1

>prot_L-elsbetiae_contig8197.17190.1 ID=prot_L-elsbetiae_contig8197.17190.1|Name=mRNA_L-elsbetiae_contig8197.17190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MPLKYLFVCFSPCRRDHHYRLMYVPEKRSNSFFSKVMTKNVKRKNCPGRT
IFLCQRKGLFYLLKLLKHVYIQLCTCPQNQLPRAGLLHHHARPPAKVHPH
ATIRHAGALAEDFIKTYAKEGTPCSIILCVRSGKPRVFARSGRIENNAPF
PSPAEGVLIQRRN*
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mRNA from alignment at L-elsbetiae_contig8197:1991..2634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8197.17190.1 ID=mRNA_L-elsbetiae_contig8197.17190.1|Name=mRNA_L-elsbetiae_contig8197.17190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=644bp|location=Sequence derived from alignment at L-elsbetiae_contig8197:1991..2634+ (Laminarionema elsbetiae ELsaHSoW15)
CCCAGTCTTCAACTTTTTCGGTCACGCAAAATGGCTTGAATTTGGTGTGG
TGTCCAAAATGCCGTTAAAATATTTATTTGTTTGTTTCTCTCCTTGCCGG
CGGGATCATCACTACCGCCTTATGTATGTACCTGAAAAGCGGTCCAACTC
GTTTTTTTCGAAAGTTATGACAAAAAACGTAAAAAGGAAAAATTGTCCCG
GACGGACCATATTTCTCTGCCAACGAAAAGGCCTCTTTTACCTACTCAAG
TTACTCAAGCATGTTTACATACAACTCTGCACCTGCCCCCAAAACCAGCT
ACCCCGGGCCGGGCTTCTACACCACCATGCTCGTCCTCCTGCCAAGGTCC
ATCCCCACGCTACAATACGCCACGCGGGTGCCTTGGCTGAGGACTTCATC
AAAACATATGCAAAAGAAGGAACGCCATGTTCGATCATCTTGTGTGTGCG
GAGTGGGAAACCACGTGTGTTCGCTCGCTCTGGTAGAATAGAGAACAACG
CGCCCTTCCCCTCCCCCGCCGAAGGCGTTCTGATACAACGCCGAAATTAG
CTAACCGAATCAACTCATCAGGTGGAAGAATCAATATTTTGTTCGAGACA
ACCCGAAACTCTGATGTGCATGACTATTAGTGGAGGCTGTTAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8197:1991..2634+

>mRNA_L-elsbetiae_contig8197.17190.1 ID=mRNA_L-elsbetiae_contig8197.17190.1|Name=mRNA_L-elsbetiae_contig8197.17190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig8197:1991..2634+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTTAAAATATTTATTTGTTTGTTTCTCTCCTTGCCGGCGGGATCA
TCACTACCGCCTTATGTATGTACCTGAAAAGCGGTCCAACTCGTTTTTTT
CGAAAGTTATGACAAAAAACGTAAAAAGGAAAAATTGTCCCGGACGGACC
ATATTTCTCTGCCAACGAAAAGGCCTCTTTTACCTACTCAAGTTACTCAA
GCATGTTTACATACAACTCTGCACCTGCCCCCAAAACCAGCTACCCCGGG
CCGGGCTTCTACACCACCATGCTCGTCCTCCTGCCAAGGTCCATCCCCAC
GCTACAATACGCCACGCGGGTGCCTTGGCTGAGGACTTCATCAAAACATA
TGCAAAAGAAGGAACGCCATGTTCGATCATCTTGTGTGTGCGGAGTGGGA
AACCACGTGTGTTCGCTCGCTCTGGTAGAATAGAGAACAACGCGCCCTTC
CCCTCCCCCGCCGAAGGCGTTCTGATACAACGCCGAAATTAGATGCCGTT
AAAATATTTATTTGTTTGTTTCTCTCCTTGCCGGCGGGATCATCACTACC
GCCTTATGTATGTACCTGAAAAGCGGTCCAACTCGTTTTTTTCGAAAGTT
ATGACAAAAAACGTAAAAAGGAAAAATTGTCCCGGACGGACCATATTTCT
CTGCCAACGAAAAGGCCTCTTTTACCTACTCAAGTTACTCAAGCATGTTT
ACATACAACTCTGCACCTGCCCCCAAAACCAGCTACCCCGGGCCGGGCTT
CTACACCACCATGCTCGTCCTCCTGCCAAGGTCCATCCCCACGCTACAAT
ACGCCACGCGGGTGCCTTGGCTGAGGACTTCATCAAAACATATGCAAAAG
AAGGAACGCCATGTTCGATCATCTTGTGTGTGCGGAGTGGGAAACCACGT
GTGTTCGCTCGCTCTGGTAGAATAGAGAACAACGCGCCCTTCCCCTCCCC
CGCCGAAGGCGTTCTGATACAACGCCGAAATTAG
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