mRNA_L-elsbetiae_contig8194.17188.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8194.17188.1
Unique NamemRNA_L-elsbetiae_contig8194.17188.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8194.17188.1 vs. uniprot
Match: D7FQH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQH0_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.740e-33
Identity = 67/91 (73.63%), Postives = 79/91 (86.81%), Query Frame = 1 
Query:    1 NQKDDDRYVRLLDVDSDSLYDAVLVACERVGSYRVVGWCKRRWLMDLLFDRPRDAEAALDDIEHLCLRSARSGRPIKILLKPGDFEGGFSS 273
            +Q+DDDRYVR+LD+DSD LY AVL AC+RVGS+RVVGWCKRRWLMD+LF+  RDA AALDDI+HL L S+RS RPIK LLKP  F+GGF+S
Sbjct:   54 DQRDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFDGGFTS 144
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BLAST of mRNA_L-elsbetiae_contig8194.17188.1 vs. uniprot
Match: A0A6H5K1S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S2_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.140e-32
Identity = 67/91 (73.63%), Postives = 78/91 (85.71%), Query Frame = 1 
Query:    1 NQKDDDRYVRLLDVDSDSLYDAVLVACERVGSYRVVGWCKRRWLMDLLFDRPRDAEAALDDIEHLCLRSARSGRPIKILLKPGDFEGGFSS 273
            +Q+DDDRYVR+LD+DSD LY AVL AC+RVGS+RVVGWCKRRWLMD+LF+  RDA AALDDI+HL L S+RS RPIK LLKP  F GGFS+
Sbjct: 1086 DQRDDDRYVRILDIDSDPLYQAVLDACDRVGSFRVVGWCKRRWLMDILFESRRDAAAALDDIDHLRLASSRSRRPIKTLLKPARFNGGFSN 1176
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BLAST of mRNA_L-elsbetiae_contig8194.17188.1 vs. uniprot
Match: A0A836CEP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEP5_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.020e-5
Identity = 29/79 (36.71%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:   22 YVRLLDVDSDSLYDAVLVACERVGSYRVVGWCKRRWLMDLLFDRPRDAEAALDDIEHLCLRSARSGRPIKILLKPGDFE 258
            Y+R+LD++       ++  C+R+GS+  +G  +++ +MD+ F+ PR+A  AL+D++ L L S   GRP   LLK  D E
Sbjct: 1065 YLRVLDLEK-----RIMGVCKRIGSFNFIGRDRKKHVMDVRFESPREALVALEDVDALGLVSCIKGRPCNTLLKARDCE 1138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8194.17188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQH0_ECTSI1.740e-3373.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1S2_9PHAE1.140e-3273.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CEP5_9STRA2.020e-536.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8194contigL-elsbetiae_contig8194:4771..8388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1265
Cds size1263
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8194.17188.1prot_L-elsbetiae_contig8194.17188.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8194 4773..8388 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.8934186-CDS-L-elsbetiae_contig8194:4772..52251622816902.8934186-CDS-L-elsbetiae_contig8194:4772..5225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8194 4773..5225 -
1691683899.8122218-CDS-L-elsbetiae_contig8194:4772..52251691683899.8122218-CDS-L-elsbetiae_contig8194:4772..5225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8194 4773..5225 -
1622816902.9045122-CDS-L-elsbetiae_contig8194:6702..71161622816902.9045122-CDS-L-elsbetiae_contig8194:6702..7116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8194 6703..7116 -
1691683899.8266633-CDS-L-elsbetiae_contig8194:6702..71161691683899.8266633-CDS-L-elsbetiae_contig8194:6702..7116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8194 6703..7116 -
1622816902.9176154-CDS-L-elsbetiae_contig8194:7377..75421622816902.9176154-CDS-L-elsbetiae_contig8194:7377..7542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8194 7378..7542 -
1691683899.8373706-CDS-L-elsbetiae_contig8194:7377..75421691683899.8373706-CDS-L-elsbetiae_contig8194:7377..7542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8194 7378..7542 -
1622816902.9323156-CDS-L-elsbetiae_contig8194:7910..79831622816902.9323156-CDS-L-elsbetiae_contig8194:7910..7983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8194 7911..7983 -
1691683899.8510146-CDS-L-elsbetiae_contig8194:7910..79831691683899.8510146-CDS-L-elsbetiae_contig8194:7910..7983Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8194 7911..7983 -
1622816902.9422934-CDS-L-elsbetiae_contig8194:8230..83881622816902.9422934-CDS-L-elsbetiae_contig8194:8230..8388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8194 8231..8388 -
1691683899.8672266-CDS-L-elsbetiae_contig8194:8230..83881691683899.8672266-CDS-L-elsbetiae_contig8194:8230..8388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8194 8231..8388 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8194.17188.1

>prot_L-elsbetiae_contig8194.17188.1 ID=prot_L-elsbetiae_contig8194.17188.1|Name=mRNA_L-elsbetiae_contig8194.17188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=421bp
NQKDDDRYVRLLDVDSDSLYDAVLVACERVGSYRVVGWCKRRWLMDLLFD
RPRDAEAALDDIEHLCLRSARSGRPIKILLKPGDFEGGFSSPFASHNPSP
AAAAAAAAAAAAAAAAAAAAAAGAKAATVGVAASWTGGGGWGGGAGGQQP
PLLGASAAARGARGDASARAVGAGQPHSPLLGAPAAPGWMGPGRASGGEG
GRGDGGFSTGSSSLQQQQQQRQRQQQRQQQRQQQEVGRPTEGSPARIQED
HANQIQPQNQLAQQQRSAEGQVQATATPSTAASGATSSAEPTSGPPVHTS
TPSPPGTNDISASTSGGNGGGGGEGGGTANGATGTSAPLPNDGGAGIVGD
TSWKGGQSGGGGSNQPPPAAAAAAMAPASGSSAQPWPAAEPASGVAANCG
GSSSAVAVAAVGVQQPPAAAS
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mRNA from alignment at L-elsbetiae_contig8194:4771..8388-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8194.17188.1 ID=mRNA_L-elsbetiae_contig8194.17188.1|Name=mRNA_L-elsbetiae_contig8194.17188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3618bp|location=Sequence derived from alignment at L-elsbetiae_contig8194:4771..8388- (Laminarionema elsbetiae ELsaHSoW15)
AACCAGAAGGACGATGACCGGTACGTTCGGCTCCTAGACGTGGACTCCGA
CAGCCTCTACGATGCCGTGCTGGTCGCGTGCGAGCGCGTCGGCAGCTACA
GGGTGGTGGGCTGGTGCAAGCGGCGGTGGCTCATGGACTTGCTCTTCGAT
CGGCCGAGGTATGTATGTAAAAACAAACCCAAAGTAAGAGAAGAGATGAC
AACACAAAGAACGCTGCTGCTGAAGATATATTGACTACTCGCGATTCCCG
CTCCACTCCACTTGACGCGGGAGACCAGGCAGATGCGTATGCGTAAATGC
ATGCATCATACCCCTACCGGGATTTTAAACCGCACATACATGCATACACT
TATTAACCGCTCGTTGTGCCCCCCGCGCTGCTGTTGTGTGTGTGTGTGCA
CACAGAGATGCCGAGGCCGCCTTGGACGACATCGAGCACCTTTGCCTGAG
GAGCGCCCGCTCCGGCAGGCCCATCAAGGTGAGGTGGGATCCCGGCTGCC
AATACAAACAAGACATGGGCACACACGGCCCCGTACCCGTGCCCTTACTC
GTGCCCTTACCCGTGTGTGGTTGGTTGGTTGATCTGGCCGGCGTCGTTCG
TGTGTCTCCGATCATGTCAACAATGGAACTTCATTCGTCGTCCACATCTA
GATCGTCCCCCCTTAAATATCCCAACGAAAAATAAAAACAAAAATAAAAA
AAGAACACACTGGACAACAGCCTACATGCATGTATATATATATATATATA
TCACGTGTCCGCCCTTCCCGTAGTTTGCTGTTCTGTGCTTGGACGAAAAA
CGCGCCAGCTCTTATTTGATGTTTACCGTCCACCCCTCCCCGGCAGATCC
TTCTCAAGCCCGGCGACTTCGAAGGGGGCTTCTCTTCGCCGTTCGCAAGC
CACAACCCGTCCCCTGCGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCGGC
GGCGGCGGCAGCAGCGGCGGCGGCAGCGGCGGGAGCCAAAGCGGCGACGG
TGGGGGTAGCGGTCCCGCCGGGCATGCTGACTCCGGACCCGTCGTCGTCG
GAGCTCAGCGTCCCCACGGCGGCGCCGGCAACGAGGATGTGGTCTCCGCT
CGGCGGCCGAGGGGGGGGGGGCGGCGGCGCGGCGGCGGCGGTCGCAGCGG
CGGCCGAGCTGGCGGCGCAGGTCGCCAACGCTAGCCAGGTCCCCGACAAT
GCATTTTCCAGAGCGGTGACGGTGAGCAGCAGCAGCGGCGGCGGCGGCGG
CGCTACAGGCGTCCGCCAGCAGGCGAGCTGGACGGGGGGCGGCGGCTGGG
GCGGCGGCGCGGGAGGCCAGCAGCCTCCCTTGCTGGGCGCGTCCGCCGCC
GCGCGCGGCGCGCGCGGTGACGCCTCCGCTCGTGCCGTGGGAGCAGGTCA
GCCCCATTCCCCCTTGCTGGGTGCGCCTGCCGCTCCGGGCTGGATGGGCC
CTGGACGGGCGAGCGGCGGCGAGGGCGGCCGCGGGGATGGCGGGTTTTCG
ACGGGGAGTAGCTCGTTGCAGCAGCAGCAGCAGCAGCGGCAGCGGCAGCA
GCAGCGGCAGCAGCAGCGGCAGCAGCAGGAAGTTGGCCGGCCAACGGAGG
GGAGCCCGGCCCGCATCCAGGAAGACCACGCGAACCAGATTCAGCCCCAA
AACCAGCTTGCGCAGCAGCAACGGTCCGCAGAGGGGGTGAGTGCGCGTCC
GCGTCCGCATCCGCACCATCCATCTGCAGCAGATTGTTGTTGTTGTCGTT
TCTCACATTAGCCAATCTAGTCCAAAAACTCCCATGGGGGCCCCGTGGTG
ACAAAAACGAGGCACACTCGACGCCGACGAAGAAAAAGTAAAGCAGGTGA
AAAGGGGCATTTTCTTTTTATGACACAGCACGTTTTTCCCCAAAAAAAAC
GCGACTCGTGAACGGAAACACCGGCGGATATAAACAACGGGTAAACAAGC
CGCACCTCTCTCTCCTTCTCCCGCAACTGTCCCCACACGTTTGCACCGCG
GCGTCGGGGGCAACCACGCCCAAATGAAAGCGGCGTATTGAGAGCTACAG
TACCCAATAAATACCCCGCAAAAAAAAAAGGCGCAAGCAGCACCGTCGTG
TTCAGCACTTAATACCATGTACTGGTAGGCAGGCCACAGTAGAATCAGCA
TCGCGCTGTTTACGCCCATGGCGGAAGCTAGCTCTAAAAGCAGGACGACA
ATCGATACGGGCGGCGAGATAAAAACCGTTCGTCGCACTTAAGCGTTGTT
TAGAATCGACGTGAACCCCGGAGATCGGAACAATCTACTGTAGGGCCAAA
ATCGATAGTTAAGACTAACATACATACGAGTTTATTTCTCACATTCGTTC
CTGGAAAACCGAAAGCGATTTCGTTAGTAAATACTACTCCGACTTCATTG
CTGACGAGGGTGGGGAGTGCTGAACCCTGCTCACGATAAAAACATCGTAG
GCAGGCACCGCAGGAGAAAGGTCCACCCCCCCCCCCCCCCTCCTGTGTGA
CCTCGGCTGGGTCGTCTAGCTAGTCGTAGTGGAGGAAGGGGGCCAGTGGG
GCAGGCGGCGAATAAGCCAATAATGGGAGGAAATAAAAAAAAACACACAC
ACACACAAATATGGTGTAGGTATGCTACGGTGGTACATATTTCTGCGAGA
TCAAAAAGGCGCTCGCTGTTCATCGTGTGAAGACCAGTCGAAGGGGGCTC
GCGCACAGGCCACCGCCCGTGCGCAAAGGCAAGTCTTTGCGGGGAGGGCG
GACCTTAACTCGAACATCGGCCCAACTCGCTTCGAACAACTGTCCCCTGC
CTCGGTAACTCCTGTACAGGAGTTGACGGGAGATATGTAGCTTGTTGGGG
ATCTCACGACAAGCAGCTTTGTAGGTACATACATACATATATACATACGT
GACGTGCAAGGTATTGATGTGGTTCGGAAAAATCTGGCACGCGAACTTCA
CTTTTTTATTTTTGTCAGCCGCGCCCGCGGCAAATTGATACCCCCTCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCNNNNNNNNNNAAACCTGGCCCCCCAAATCTTCTTTTT
TTTTTTTTGCCCCCCCCCCCGCGGGCAATTGACCCCCCCCCCCCCCCCCC
CCCCCCCCGCCAGCAAGTGCAGGCCACCGCCACTCCGAGCACGGCGGCTT
CTGGCGCCACCAGCAGCGCTGAACCTACCAGCGGGCCTCCTGTCCACACC
AGCACGCCCTCTCCACCCGGAACCAACGATATTTCCGCCTCGACTAGCGG
CGGCAACGGCGGTGGTGGCGGCGAAGGCGGCGGCACGGCGAATGGTGCCA
CCGGTACATCGGCTCCCTTACCGAACGACGGCGGCGCCGGGATCGTCGGC
GACACCAGCTGGAAGGGGGGCCAAAGCGGCGGCGGGGGCAGCAACCAGCC
CCCCCCCGCGGCGGCGGCCGCGGCTATGGCGCCAGCCTCCGGCTCGTCCG
CCCAGCCGTGGCCTGCTGCCGAGCCAGCGTCGGGAGTGGCGGCGAACTGT
GGCGGCAGCAGTTCCGCCGTCGCTGTCGCCGCCGTCGGTGTGCAGCAACC
CCCCGCCGCGGCGTCGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8194:4771..8388-

>mRNA_L-elsbetiae_contig8194.17188.1 ID=mRNA_L-elsbetiae_contig8194.17188.1|Name=mRNA_L-elsbetiae_contig8194.17188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2526bp|location=Sequence derived from alignment at L-elsbetiae_contig8194:4771..8388- (Laminarionema elsbetiae ELsaHSoW15)
AACCAGAAGGACGATGACCGGTACGTTCGGCTCCTAGACGTGGACTCCGA
CAGCCTCTACGATGCCGTGCTGGTCGCGTGCGAGCGCGTCGGCAGCTACA
GGGTGGTGGGCTGGTGCAAGCGGCGGTGGCTCATGGACTTGCTCTTCGAT
CGGCCGAGAACCAGAAGGACGATGACCGGTACGTTCGGCTCCTAGACGTG
GACTCCGACAGCCTCTACGATGCCGTGCTGGTCGCGTGCGAGCGCGTCGG
CAGCTACAGGGTGGTGGGCTGGTGCAAGCGGCGGTGGCTCATGGACTTGC
TCTTCGATCGGCCGAGAGATGCCGAGGCCGCCTTGGACGACATCGAGCAC
CTTTGCCTGAGGAGCGCCCGCTCCGGCAGGCCCATCAAGAGATGCCGAGG
CCGCCTTGGACGACATCGAGCACCTTTGCCTGAGGAGCGCCCGCTCCGGC
AGGCCCATCAAGATCCTTCTCAAGCCCGGCGACTTCGAAGGGGGCTTCTC
TTCGCCGTTCGCAAGCCACAACCCGTCCCCTGCGGCGGCGGCGGCAGCGG
CGGCGGCGGCAGCGGCGGCGGCGGCAGCAGCGGCGGCGGCAGCGGCGGGA
GCCAAAGCGGCGACGGTGGGGGTAGCGATCCTTCTCAAGCCCGGCGACTT
CGAAGGGGGCTTCTCTTCGCCGTTCGCAAGCCACAACCCGTCCCCTGCGG
CGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCGGCGGCGGCAGCAGCGGCG
GCGGCAGCGGCGGGAGCCAAAGCGGCGACGGTGGGGGTAGCGGCGAGCTG
GACGGGGGGCGGCGGCTGGGGCGGCGGCGCGGGAGGCCAGCAGCCTCCCT
TGCTGGGCGCGTCCGCCGCCGCGCGCGGCGCGCGCGGTGACGCCTCCGCT
CGTGCCGTGGGAGCAGGTCAGCCCCATTCCCCCTTGCTGGGTGCGCCTGC
CGCTCCGGGCTGGATGGGCCCTGGACGGGCGAGCGGCGGCGAGGGCGGCC
GCGGGGATGGCGGGTTTTCGACGGGGAGTAGCTCGTTGCAGCAGCAGCAG
CAGCAGCGGCAGCGGCAGCAGCAGCGGCAGCAGCAGCGGCAGCAGCAGGA
AGTTGGCCGGCCAACGGAGGGGAGCCCGGCCCGCATCCAGGAAGACCACG
CGAACCAGATTCAGCCCCAAAACCAGCTTGCGCAGCAGCAACGGTCCGCA
GAGGGGGCGAGCTGGACGGGGGGCGGCGGCTGGGGCGGCGGCGCGGGAGG
CCAGCAGCCTCCCTTGCTGGGCGCGTCCGCCGCCGCGCGCGGCGCGCGCG
GTGACGCCTCCGCTCGTGCCGTGGGAGCAGGTCAGCCCCATTCCCCCTTG
CTGGGTGCGCCTGCCGCTCCGGGCTGGATGGGCCCTGGACGGGCGAGCGG
CGGCGAGGGCGGCCGCGGGGATGGCGGGTTTTCGACGGGGAGTAGCTCGT
TGCAGCAGCAGCAGCAGCAGCGGCAGCGGCAGCAGCAGCGGCAGCAGCAG
CGGCAGCAGCAGGAAGTTGGCCGGCCAACGGAGGGGAGCCCGGCCCGCAT
CCAGGAAGACCACGCGAACCAGATTCAGCCCCAAAACCAGCTTGCGCAGC
AGCAACGGTCCGCAGAGGGGCAAGTGCAGGCCACCGCCACTCCGAGCACG
GCGGCTTCTGGCGCCACCAGCAGCGCTGAACCTACCAGCGGGCCTCCTGT
CCACACCAGCACGCCCTCTCCACCCGGAACCAACGATATTTCCGCCTCGA
CTAGCGGCGGCAACGGCGGTGGTGGCGGCGAAGGCGGCGGCACGGCGAAT
GGTGCCACCGGTACATCGGCTCCCTTACCGAACGACGGCGGCGCCGGGAT
CGTCGGCGACACCAGCTGGAAGGGGGGCCAAAGCGGCGGCGGGGGCAGCA
ACCAGCCCCCCCCCGCGGCGGCGGCCGCGGCTATGGCGCCAGCCTCCGGC
TCGTCCGCCCAGCCGTGGCCTGCTGCCGAGCCAGCGTCGGGAGTGGCGGC
GAACTGTGGCGGCAGCAGTTCCGCCGTCGCTGTCGCCGCCGTCGGTGTGC
AGCAACCCCCCGCCGCGGCGTCGCAAGTGCAGGCCACCGCCACTCCGAGC
ACGGCGGCTTCTGGCGCCACCAGCAGCGCTGAACCTACCAGCGGGCCTCC
TGTCCACACCAGCACGCCCTCTCCACCCGGAACCAACGATATTTCCGCCT
CGACTAGCGGCGGCAACGGCGGTGGTGGCGGCGAAGGCGGCGGCACGGCG
AATGGTGCCACCGGTACATCGGCTCCCTTACCGAACGACGGCGGCGCCGG
GATCGTCGGCGACACCAGCTGGAAGGGGGGCCAAAGCGGCGGCGGGGGCA
GCAACCAGCCCCCCCCCGCGGCGGCGGCCGCGGCTATGGCGCCAGCCTCC
GGCTCGTCCGCCCAGCCGTGGCCTGCTGCCGAGCCAGCGTCGGGAGTGGC
GGCGAACTGTGGCGGCAGCAGTTCCGCCGTCGCTGTCGCCGCCGTCGGTG
TGCAGCAACCCCCCGCCGCGGCGTCG
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