mRNA_L-elsbetiae_contig8192.17187.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8192.17187.1
Unique NamemRNA_L-elsbetiae_contig8192.17187.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8192.17187.1 vs. uniprot
Match: A0A6H5K3D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D8_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 3.600e-15
Identity = 100/230 (43.48%), Postives = 124/230 (53.91%), Query Frame = -2 
Query:    7 EVFLRGSLWKTWT-------------------RVVAEPGGWIVRG-NGGKPRSWRKTGCRRSRHKNRRHWEXXXXXXXXXXXXXXXXXXVKGRRRRVSLRGGADTEAEPLLPQLKRSQ-RNRTKTNLDLPESMAHTNAFKTNHAAIAASIHTMNGHDGGDQKEIGEQREEDRKKRDAEIAKQAIRRIEQLPRENRAAAVGDLLAIGTRDQGEQEEEEETCKECGQHFDGD 633
            EV LRG++W+ WT                   RVV +  GWI R  N G  R  +K+GC RSRHKN     XXXXXXXXXXXXXXXXX  KGRRRRVSLRGGAD               RNR +  L+L  ++    + + N+A  +A+IHT+ G        I E  E   +++D EIAK+   R  Q+  E RAA   DLL +   D G+  + EE CKEC QHFD D
Sbjct:  232 EVCLRGTVWRRWTTSAPEDVXXXXXXXXXXXXRVVDQGTGWITRTKNIGGARGRKKSGCHRSRHKNXXXXXXXXXXXXXXXXXXXXXXGPKGRRRRVSLRGGADPXXXXXXXXXXXXXXRNRRQKILELV-AINDGASSQINNAGNSAAIHTILG-------SIDEDIEVQLQRQD-EIAKRIREREAQISAEARAATTRDLL-LSVNDSGD--DREEKCKECKQHFDDD 449
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8192.17187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K3D8_9PHAE3.600e-1543.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8192contigL-elsbetiae_contig8192:5260..5896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size639
Cds size378
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.7914813-UTR-L-elsbetiae_contig8192:5259..55181622816902.7914813-UTR-L-elsbetiae_contig8192:5259..5518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8192 5260..5518 +
1691683899.7597742-UTR-L-elsbetiae_contig8192:5259..55181691683899.7597742-UTR-L-elsbetiae_contig8192:5259..5518Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8192 5260..5518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.804709-CDS-L-elsbetiae_contig8192:5518..58961622816902.804709-CDS-L-elsbetiae_contig8192:5518..5896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8192 5519..5896 +
1691683899.769762-CDS-L-elsbetiae_contig8192:5518..58961691683899.769762-CDS-L-elsbetiae_contig8192:5518..5896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8192 5519..5896 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8192.17187.1prot_L-elsbetiae_contig8192.17187.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8192 5519..5896 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8192.17187.1

>prot_L-elsbetiae_contig8192.17187.1 ID=prot_L-elsbetiae_contig8192.17187.1|Name=mRNA_L-elsbetiae_contig8192.17187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MAAWFVLKALVCAMDSGRSKFVFVLFLWLLLSCGSNGSASVSAPPRSDTR
RRRPLTLRPRLHLLLWRKARRRRFSQWRLFLCLERRQPVFRQLRGFPPFP
RTIHPPGSATTLVHVFHKLPRRKTSS
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mRNA from alignment at L-elsbetiae_contig8192:5260..5896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8192.17187.1 ID=mRNA_L-elsbetiae_contig8192.17187.1|Name=mRNA_L-elsbetiae_contig8192.17187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=637bp|location=Sequence derived from alignment at L-elsbetiae_contig8192:5260..5896+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCCCATCACCATCGAAGTGTTGGCCACACTCCTTGCACGTCTCTTCCT
CTTCTTCCTGTTCTCCCTGGTCCCTGGTCCCGATGGCCAACAGATCTCCT
ACCGCAGCAGCCCGATTCTCCCTCGGAAGTTGTTCTATCCTTCTAATAGC
CTGCTTTGCAATTTCTGCATCGCGCTTTTTTCTGTCCTCCTCCCGTTGCT
CTCCGATTTCCTTCTGATCGCCGCCATCGTGCCCATTCATCGTGTGGATC
GAAGCAGCGATGGCGGCGTGGTTTGTTTTAAAAGCATTGGTGTGTGCCAT
GGACTCCGGAAGGTCCAAATTTGTCTTCGTCCTGTTTCTTTGGCTCCTTT
TAAGTTGTGGTAGCAATGGTTCCGCCTCGGTATCCGCCCCCCCTCGCAGC
GACACACGCCGCCGGCGACCTTTAACCCTGCGTCCACGCCTGCACCTCCT
CTTGTGGCGCAAAGCTCGGCGACGCCGTTTCTCCCAGTGGCGCCTGTTCT
TGTGCCTCGAACGGCGGCAACCAGTCTTCCGCCAGCTGCGAGGCTTTCCG
CCGTTTCCCCGAACGATCCATCCTCCCGGCTCGGCCACTACCCTTGTCCA
CGTCTTCCACAAACTTCCACGCAGGAAAACCTCCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8192:5260..5896+

>mRNA_L-elsbetiae_contig8192.17187.1 ID=mRNA_L-elsbetiae_contig8192.17187.1|Name=mRNA_L-elsbetiae_contig8192.17187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig8192:5260..5896+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCGTGGTTTGTTTTAAAAGCATTGGTGTGTGCCATGGACTCCGG
AAGGTCCAAATTTGTCTTCGTCCTGTTTCTTTGGCTCCTTTTAAGTTGTG
GTAGCAATGGTTCCGCCTCGGTATCCGCCCCCCCTCGCAGCGACACACGC
CGCCGGCGACCTTTAACCCTGCGTCCACGCCTGCACCTCCTCTTGTGGCG
CAAAGCTCGGCGACGCCGTTTCTCCCAGTGGCGCCTGTTCTTGTGCCTCG
AACGGCGGCAACCAGTCTTCCGCCAGCTGCGAGGCTTTCCGCCGTTTCCC
CGAACGATCCATCCTCCCGGCTCGGCCACTACCCTTGTCCACGTCTTCCA
CAAACTTCCACGCAGGAAAACCTCCTCCATGGCGGCGTGGTTTGTTTTAA
AAGCATTGGTGTGTGCCATGGACTCCGGAAGGTCCAAATTTGTCTTCGTC
CTGTTTCTTTGGCTCCTTTTAAGTTGTGGTAGCAATGGTTCCGCCTCGGT
ATCCGCCCCCCCTCGCAGCGACACACGCCGCCGGCGACCTTTAACCCTGC
GTCCACGCCTGCACCTCCTCTTGTGGCGCAAAGCTCGGCGACGCCGTTTC
TCCCAGTGGCGCCTGTTCTTGTGCCTCGAACGGCGGCAACCAGTCTTCCG
CCAGCTGCGAGGCTTTCCGCCGTTTCCCCGAACGATCCATCCTCCCGGCT
CGGCCACTACCCTTGTCCACGTCTTCCACAAACTTCCACGCAGGAAAACC
TCCTCC
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