mRNA_L-elsbetiae_contig8191.17185.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8191.17185.1
Unique NamemRNA_L-elsbetiae_contig8191.17185.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8191.17185.1 vs. uniprot
Match: D8LQR2_ECTSI (Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR2_ECTSI)

HSP 1 Score: 426 bits (1096), Expect = 2.060e-140
Identity = 216/242 (89.26%), Postives = 226/242 (93.39%), Query Frame = 1 
Query:    1 RKGGKGGGKGSKAPAAAGRGVTVSSVPGTTLDFLKASRRSSRGVDLGDKRSLYDTPGLLLPHTLTSRLNAEELRAAIPKKTVDHVTFRLGGGKVVLLGGLARVEVVTGRPFLLTFFVSNDVRLHPTDITRVDDMLSQHVGKDQMVFPPFEPERVEELGPLVPTDFDIAGAGWREAAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGATVKKGRKKQGRRA 726
            RKGGKGGG+G KAPA AGRGVTVSSVPGTTLDFLK        VDLGDKR+LYDTPGLLLPHTLTSRLNAEELRAAIPKK VDHVTFR+G GKVVL+GGLARVEVVTGRPFLLTFFVSNDVRLHPTD  RVDDMLS+HVGK QM+FPPF+PERV+ELGPLVPTDFDI GAGWRE+AADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGG+TVKKGRKKQGRRA
Sbjct:  505 RKGGKGGGRGGKAPAVAGRGVTVSSVPGTTLDFLK--------VDLGDKRALYDTPGLLLPHTLTSRLNAEELRAAIPKKKVDHVTFRVGEGKVVLVGGLARVEVVTGRPFLLTFFVSNDVRLHPTDARRVDDMLSEHVGKGQMIFPPFDPERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRRA 738
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BLAST of mRNA_L-elsbetiae_contig8191.17185.1 vs. uniprot
Match: A0A835YJZ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ8_9STRA)

HSP 1 Score: 271 bits (693), Expect = 1.200e-82
Identity = 127/223 (56.95%), Postives = 172/223 (77.13%), Query Frame = 1 
Query:   55 RGVTVSSVPGTTLDFLKASRRSSRGVDLGDKRSLYDTPGLLLPHTLTSRLNAEELRAAIPKKTVDHVTFRLGGGKVVLLGGLARVEVVTGRPFLLTFFVSNDVRLHPTDITRVDDMLSQHVGKDQMVFPPFEPERVEELGPLVPTDFDIAGAGWREAAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGATVKKGRKKQGRR 723
            +G+TVS VPGTTLDFL+        V++G    LYDTPGL+LPH LTSRL  EEL++ IP K V+HVT RL  GK VL+GGLAR+E+V+G+PFL TFFVSN+V+LH TD  RVD+ + +H+G  +++FPPF  ER +ELGP+V ++F + G GWR A  D+V++GLGW+SVTGAG   ++V AP+ +LV+ R+PL+P+E+W+TT+ FTG  TVK+G+K QGRR
Sbjct:  312 QGLTVSIVPGTTLDFLR--------VNMGGDVCLYDTPGLILPHQLTSRLTPEELKSVIPAKAVEHVTLRLTEGKAVLVGGLARIELVSGKPFLFTFFVSNEVKLHMTDAARVDEFIDKHMGS-KLLFPPFSKERYQELGPMVSSEFTVVGEGWRRAGPDIVLSGLGWISVTGAGECAVKVTAPKDILVLTRDPLMPFEAWDTTSTFTGTRTVKRGKKTQGRR 525
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BLAST of mRNA_L-elsbetiae_contig8191.17185.1 vs. uniprot
Match: A0A7S4NA62_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NA62_9STRA)

HSP 1 Score: 238 bits (606), Expect = 2.210e-68
Identity = 118/219 (53.88%), Postives = 155/219 (70.78%), Query Frame = 1 
Query:   61 VTVSSVPGTTLDFLKASRRSSRGVDLGDKRSLYDTPGLLLPHTLTSRLNAEELRAAIPKKTVDHVTFRLGGGKVVLLGGLARVEVV-TGRPFLLTFFVSNDVRLHPTDITRVDDMLSQHVGKDQMVFPPFEP--ERVEELGPLVPTDFDIAGAGWREAAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGATVKKGRK 708
            VTVS +PGTTL F+K        VDLG+   LYDTPGLL+P T+T RL   EL+  +PKK V+ VTFR+  GK VL+GGLAR+EV    +PFL TFFV+ND++LHPTD+ + D+ ++ H G   M+ PPFEP  +R++E+G   P D  I GAGW+EAAAD+ + GLGWVSVTGAG   +R+  PRGV +  R PL+P++ WE TA++TGG  V+KG K
Sbjct:  455 VTVSPLPGTTLKFIK--------VDLGNGVKLYDTPGLLVPGTMTQRLTPAELKIVVPKKEVEPVTFRVASGKCVLVGGLARIEVTGNSKPFLFTFFVANDIKLHPTDVKKADEFVASHAGG--MLTPPFEPGQKRMDEIGEFEPHDVVIEGAGWKEAAADIALRGLGWVSVTGAGVANVRISVPRGVGISVRPPLMPFDIWEATARYTGGRAVRKGGK 663
[Close]
BLAST of mRNA_L-elsbetiae_contig8191.17185.1 vs. uniprot
Match: A0A4D9D9J5_9STRA (G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9J5_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.930e-67
Identity = 120/221 (54.30%), Postives = 155/221 (70.14%), Query Frame = 1 
Query:   61 VTVSSVPGTTLDFLKASRRSSRGVDLGDKRSLYDTPGLLLPHTLTSRLNAEELRAAIPKKTVDHVTFRLGGGKVVLLGGLARVEVVTGRPFLLTFFVSNDVRLHPTDITRVDDMLSQHVGKDQMVFPPFEPERVEELGPLVPTDFDIAGAGWREAAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGATVKKGRKKQGRR 723
            VT S++PGTTLDF++        VDLGDK SLYDTPGL+LPH +T+ LN EEL+A IP+K ++HVT RL  GK VLLGGL R++++ GRPFL TF+VSN+V+LH T   R  + L  H+G  ++V PPF  ER   +GP V  DF+I G GW+ +A D+VI+GLGW+SVTGA    +RV AP  V V  R PL+PYE+W TTAK+TG   VK  ++K   R
Sbjct:  650 VTTSALPGTTLDFIE--------VDLGDKVSLYDTPGLILPHQITTLLNTEELKAVIPQKRINHVTLRLKEGKSVLLGGLVRLDMLEGRPFLFTFYVSNEVKLHQTATDRAGEFLDSHLG--ELVSPPFTQERRAAMGPWVSRDFEIEGTGWKTSAVDIVISGLGWISVTGALNCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQKGSSR 860
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BLAST of mRNA_L-elsbetiae_contig8191.17185.1 vs. uniprot
Match: A0A7S2LA52_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LA52_9STRA)

HSP 1 Score: 229 bits (584), Expect = 2.140e-67
Identity = 114/230 (49.57%), Postives = 160/230 (69.57%), Query Frame = 1 
Query:   61 VTVSSVPGTTLDFLKASRRSSRGVDLGDKRSLYDTPGLLLPHTLTSRLNAEELRAAIPKKTVDHVTFRLGGGKVVLLGGLARVEVV-TGRPFLLTFFVSNDVRLHPTDITRVDDMLSQHVGKDQMVFPPFEP--ERVEELGPLVPTDFDIAGAGWREAAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGATVKKGRK-KQGRRA*G*G 738
            VT S +PGTTL F++        ++LG  R+L+DTPGLL+P  LT RL  EEL+  +PKK V+ +TFR+  GK VL+GGLA+VE++   +PFL TFFV+ND++LHPTD  R D+  S+HVGK  ++ PP EP  ER+EE+G     + D+ G GW++AAAD+ + GLGWV+VTGAG   +R+  P+G+ +  R PL+P++ WE TAK+TGG  V+K  K + G+R  G G
Sbjct:  222 VTTSPLPGTTLKFIR--------IELGKGRALFDTPGLLVPGCLTERLTPEELKIVVPKKRVEPITFRVASGKCVLVGGLAKVELIGDSKPFLFTFFVANDIKLHPTDSERADEFTSKHVGK--ILTPPLEPGQERLEEIGEFEYHEIDVKGEGWKQAAADITLRGLGWVAVTGAGVAKVRIGVPKGIGITVRPPLMPFDVWEATAKYTGGRAVRKSTKSRSGKRRKGVG 441
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BLAST of mRNA_L-elsbetiae_contig8191.17185.1 vs. uniprot
Match: A0A1E7F2J8_9STRA (G domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2J8_9STRA)

HSP 1 Score: 222 bits (565), Expect = 3.320e-66
Identity = 108/228 (47.37%), Postives = 157/228 (68.86%), Query Frame = 1 
Query:   61 VTVSSVPGTTLDFLKASRRSSRGVDLGDKRSLYDTPGLLLPHTLTSRLNAEELRAAIPKKTVDHVTFRLGGGKVVLLGGLARVEVV-TGRPFLLTFFVSNDVRLHPTDITRVDDMLSQHVGKDQMVFPPFEP--ERVEELGPLVPTDFDIAGAGWREAAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGATVKK------GRKKQG 717
            +T S +PGTTL F+K        +DLGD +++YDTPGLL+P T+T  L  EELR   PKK V+ +TFR+  GK VL+GGLA++EV+   +PFLLTFFV+ND++LHPTD +R D+ + +H G   ++ PP EP  ER+ E+G       ++ GAGW+EAAAD+ + GLGW++VTGAG V L++  P+G+ +  R PL+P++ WE  A++TG   V+K      G+K++G
Sbjct:   87 LTTSPLPGTTLKFIK--------IDLGDGQNIYDTPGLLVPGTITQLLTPEELRVVCPKKKVEPITFRVASGKCVLIGGLAKIEVIGDSKPFLLTFFVANDIKLHPTDSSRADEFVRKHTGT--ILTPPLEPGPERMAEIGEFDTHTIELDGAGWKEAAADISLTGLGWIAVTGAGKVKLKISVPKGIGIAVRPPLMPFDIWEVAARYTGSKAVRKTTKSKTGKKRKG 304
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BLAST of mRNA_L-elsbetiae_contig8191.17185.1 vs. uniprot
Match: A0A7S2LG86_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LG86_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.680e-64
Identity = 110/219 (50.23%), Postives = 156/219 (71.23%), Query Frame = 1 
Query:   61 VTVSSVPGTTLDFLKASRRSSRGVDLGDKRSLYDTPGLLLPHTLTSRLNAEELRAAIPKKTVDHVTFRLGGGKVVLLGGLARVEVVT-GRPFLLTFFVSNDVRLHPTDITRVDDMLSQHVGKDQMVFPPFEP--ERVEELGPLVPTDFDIAGAGWREAAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGATVKKGRK 708
            VT S +PGTTL F+K        VDLG+ R +YDTPGL++P TLTSRL   EL+  +PKK V+ V+FR+G GK VL+GGLAR+EV +  +PFL TFFVSND++LHPTD ++ D++L +  G   ++ PP  P  ER++++G +   D +I GAGW+EAAAD+ + G+GW++VTGAG   +++  P G+ V  R PL+P++ WE TAK+TGG  ++KG K
Sbjct:  414 VTTSPLPGTTLKFIK--------VDLGNGRKMYDTPGLIVPGTLTSRLTPAELKMVVPKKPVEAVSFRVGPGKCVLIGGLARIEVASDSKPFLFTFFVSNDIKLHPTDASKADEVLRKLAG--DIITPPLGPGPERLDQIGSIEYHDVEIDGAGWKEAAADISLRGIGWIAVTGAGIAKVKIGVPEGIGVAVRPPLMPFDMWEATAKYTGGRAIRKGGK 622
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BLAST of mRNA_L-elsbetiae_contig8191.17185.1 vs. uniprot
Match: A0A7S2W145_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W145_9STRA)

HSP 1 Score: 214 bits (544), Expect = 2.040e-64
Identity = 104/207 (50.24%), Postives = 144/207 (69.57%), Query Frame = 1 
Query:  130 VDLGDKRSLYDTPGLLLPHTLTSRLNAEELRAAIPKKTVDHVTFRLGGGKVVLLGGLARVEVVT-GRPFLLTFFVSNDVRLHPTDITRVDDMLSQHVGKDQMVFPPFEP--ERVEELGPLVPTDFDIAGAGWREAAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGATVKK-GRKKQGRRA*G*G 738
             DLGD RSLYDTPGLL+P TLT  L   EL+  +PK+ V+ +TFR+G GK VL+GGLAR+EV    +PFL TFFVSN+++LHPT   + D+ L  H G   M+ PP +P  ER+E++G     D ++ GAGW+EA AD+ + G+GWV+VTGAG   +RV  P+G+ +  R PL+P++ W  TA++TGG +V+K G+ K G+R  G G
Sbjct:    2 ADLGDGRSLYDTPGLLVPGTLTQLLTPAELKMVVPKRKVEPITFRVGPGKCVLIGGLARIEVSEDSKPFLFTFFVSNEIKLHPTKTDKADEFLQTHAGN--MITPPLDPGPERMEQIGEFEHHDIEVDGAGWKEAGADITLRGIGWVAVTGAGTAKVRVSVPKGIGISVRPPLMPFDVWAATARYTGGRSVRKSGKSKSGKRRKGVG 206
[Close]
BLAST of mRNA_L-elsbetiae_contig8191.17185.1 vs. uniprot
Match: A0A7R9WQ60_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WQ60_9STRA)

HSP 1 Score: 214 bits (546), Expect = 2.750e-64
Identity = 109/221 (49.32%), Postives = 149/221 (67.42%), Query Frame = 1 
Query:   61 VTVSSVPGTTLDFLKASRRSSRGVDLGDKRSLYDTPGLLLPHTLTSRLNAEELRAAIPKKTVDHVTFRLGGGKVVLLGGLARVEVVTG-RPFLLTFFVSNDVRLHPTDITRVDDMLSQHVGKDQMVFPPFEP--ERVEELGPLVPTDFDIAGAGWREAAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGATVKKGRKKQ 714
            VT S +PGTTL F+K        +DLGD R+LYDTPGLL+P T+T  L  EEL+   PKK V+ +TFR+  GK +++GGLARVEV    +PFLLTFFV+ND++LHPT   +VD++L  H G   M+ PP     +R+EE+G  V  D +I G GW+EAAAD+ + GLGWV+VTGAG   +RV  P+G+ V  R PL+P++  +  A++TG   V+K  K +
Sbjct:   17 VTASPLPGTTLKFIK--------IDLGDGRTLYDTPGLLVPGTITQLLTGEELKVVCPKKQVEPITFRVSSGKCIMIGGLARVEVFGDCKPFLLTFFVANDIKLHPTASDKVDNVLQNHAGT--MLTPPLGDGEKRMEEIGEFVNHDIEIEGRGWKEAAADISLTGLGWVAVTGAGMANIRVSVPKGIGVAVRPPLMPFDVLDVGARYTGAKAVRKSTKSK 227
[Close]
BLAST of mRNA_L-elsbetiae_contig8191.17185.1 vs. uniprot
Match: A0A7S3YK74_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK74_HETAK)

HSP 1 Score: 213 bits (541), Expect = 9.590e-64
Identity = 110/228 (48.25%), Postives = 158/228 (69.30%), Query Frame = 1 
Query:   43 AAAGRGVTVSSVPGTTLDFLKASRRSSRGVDLGDKRSLYDTPGLLLPHTLTSRLNAEELRAAIPKKTVDHVTFRLGGGKVVLLGGLARVEVVTGRPFLLTFFVSNDVRLHPTDITRVDDMLSQHVGKDQMVFPPFEPERVEELGPLVPT-DFDIAGAGWREAAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGATVKKGRKKQGRR 723
            A+ G+ VT S +PGTTLDFLK        +D+G    L DTPGL+LPH LT  L+ +EL+A +P+  V+HVT R+G GK VL+GGLA+++++ G+PF  TFFVSN V+LH T   + +++L +H+G   +VFPPF  ER + L     T DF I G GW +AA D+ I+GLG++ VTGAG   +R+ AP+ V+V+ R+ L+PY++ ++T+KFTGG  V+K + K GRR
Sbjct:    7 ASRGKKVTTSPIPGTTLDFLK--------IDIGGTL-LIDTPGLILPHQLTLSLDPKELKAVLPESQVEHVTLRVGEGKSVLMGGLAKLDMLEGKPFFFTFFVSNKVKLHQTSTEKSNEVLEKHMGT--LVFPPFTEERYKTLNAETSTHDFVIEGVGWNKAAQDIHISGLGFIGVTGAGKCKVRITAPKNVMVLLRDALMPYDTRDSTSKFTGGRVVRKQKGKGGRR 223
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8191.17185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQR2_ECTSI2.060e-14089.26Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ec... [more]
A0A835YJZ8_9STRA1.200e-8256.95P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4NA62_9STRA2.210e-6853.88Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A4D9D9J5_9STRA1.930e-6754.30G domain-containing protein n=2 Tax=Monodopsidacea... [more]
A0A7S2LA52_9STRA2.140e-6749.57Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1E7F2J8_9STRA3.320e-6647.37G domain-containing protein n=1 Tax=Fragilariopsis... [more]
A0A7S2LG86_9STRA1.680e-6450.23Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2W145_9STRA2.040e-6450.24Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7R9WQ60_9STRA2.750e-6449.32Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3YK74_HETAK9.590e-6448.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8191contigL-elsbetiae_contig8191:7..5898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.0
Seed ortholog evalue7e-53
Seed eggNOG ortholog2880.D8LQR2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTP binding
EggNOG OGsCOG1161@1,KOG1249@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1200
Cds size330
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.696747-UTR-L-elsbetiae_contig8191:6..4771622816902.696747-UTR-L-elsbetiae_contig8191:6..477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8191 7..477 -
1691683899.6737592-UTR-L-elsbetiae_contig8191:6..4771691683899.6737592-UTR-L-elsbetiae_contig8191:6..477Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8191 7..477 -
1622816902.7311134-UTR-L-elsbetiae_contig8191:1954..19641622816902.7311134-UTR-L-elsbetiae_contig8191:1954..1964Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8191 1955..1964 -
1691683899.7157235-UTR-L-elsbetiae_contig8191:1954..19641691683899.7157235-UTR-L-elsbetiae_contig8191:1954..1964Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8191 1955..1964 -
1622816902.7420263-UTR-L-elsbetiae_contig8191:2608..27541622816902.7420263-UTR-L-elsbetiae_contig8191:2608..2754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8191 2609..2754 -
1691683899.7288384-UTR-L-elsbetiae_contig8191:2608..27541691683899.7288384-UTR-L-elsbetiae_contig8191:2608..2754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8191 2609..2754 -
1622816902.7535863-UTR-L-elsbetiae_contig8191:3323..34371622816902.7535863-UTR-L-elsbetiae_contig8191:3323..3437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8191 3324..3437 -
1691683899.7385948-UTR-L-elsbetiae_contig8191:3323..34371691683899.7385948-UTR-L-elsbetiae_contig8191:3323..3437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8191 3324..3437 -
1622816902.7638745-UTR-L-elsbetiae_contig8191:5769..58981622816902.7638745-UTR-L-elsbetiae_contig8191:5769..5898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8191 5770..5898 -
1691683899.7500021-UTR-L-elsbetiae_contig8191:5769..58981691683899.7500021-UTR-L-elsbetiae_contig8191:5769..5898Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8191 5770..5898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.7111506-CDS-L-elsbetiae_contig8191:477..6841622816902.7111506-CDS-L-elsbetiae_contig8191:477..684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8191 478..684 -
1691683899.6890585-CDS-L-elsbetiae_contig8191:477..6841691683899.6890585-CDS-L-elsbetiae_contig8191:477..684Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8191 478..684 -
1622816902.7214267-CDS-L-elsbetiae_contig8191:1831..19541622816902.7214267-CDS-L-elsbetiae_contig8191:1831..1954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8191 1832..1954 -
1691683899.7008777-CDS-L-elsbetiae_contig8191:1831..19541691683899.7008777-CDS-L-elsbetiae_contig8191:1831..1954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8191 1832..1954 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8191.17185.1prot_L-elsbetiae_contig8191.17185.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8191 478..1954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8191.17185.1

>prot_L-elsbetiae_contig8191.17185.1 ID=prot_L-elsbetiae_contig8191.17185.1|Name=mRNA_L-elsbetiae_contig8191.17185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MLSQHVGKDQMVFPPFEPERVEELGPLVPTDFDIAGAGWREAAADVVIAG
LGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGATVKK
GRKKQGRRA*
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mRNA from alignment at L-elsbetiae_contig8191:7..5898-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8191.17185.1 ID=mRNA_L-elsbetiae_contig8191.17185.1|Name=mRNA_L-elsbetiae_contig8191.17185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5892bp|location=Sequence derived from alignment at L-elsbetiae_contig8191:7..5898- (Laminarionema elsbetiae ELsaHSoW15)
CGCAAGGGTGGCAAGGGCGGCGGCAAGGGAAGCAAGGCGCCCGCGGCGGC
GGGGAGGGGCGTGACCGTGAGCAGCGTGCCGGGGACCACGCTGGACTTTC
TCAAGGCAAGCCGTCGGTCATCTCGCGGTGTACACAAATGTCAGCAGTCT
ACGTCTCCGGTCTGTGAAAATATCGTTCTAGGGGGGATCTGTTGTAGGCA
TACCATGTAACATACTAACCTCCTTTTTCTTCCCCGTCCAGGACATATAT
ACATACTCACATTTTTTTTTTTCGCACAAAATTATTGCAGACAATCAACC
CGTGCTATTGTACTGTTTTTTACGTTGTCGTCGTTCAGTCGCCGCCGTCG
TCGTGTGCTTCTATGCCGTACAAGCTGGTTCATGCTGAGTGCCCGAAATG
TTTTCCCTGGGATTTCCTCACGCCGTTCTTTCGAGCTACTCGTATGTATT
GTATTTATGTTGTGTTTGTTTGCTTTGTTTGCTTGTTTGTATTCTCGGCC
TGCGTCGTGTCCTGTCCGAGGGTGTTTTATGTTATTTTTATTTTTATTTT
ATTTTTATTGTATTTTTACCCCCTGTCGGTGGGCGGTATAATCGGGGGAG
GGACTACCGTAAGTGTGCGAAGGTTCGCACCCCCGTGTTAGCGTTTTTCT
GTAGCGTATTTCTCCACAACCAGGAGGGTACCACTGCCGAAAAGGGTGGT
TTTCGAAACGTCTCGCCGGGGGCTTTCCAGAGAGGTATCAGTTAGTGTTC
GCACCCTCCTGGTTGTGGAGAAATGGAGAAACACCCTTTAGAAAAATGCT
AACACGGGGGTGCGAACCTTCGCACACTTACCGTATGTAGACCTGTGCGG
GCCTGGCCCGCGAGAACCCGGCGCGGAACTCCCCGGCTTTGTTGGGGTAC
CAAGATAGTGGTGTTGGCTGTTCCAGTTTTGTTTTTACCTCACATAGCGT
GTAGAGGAGAGCGAAGGGCTCCAGATTCGAGATCTGTTTTATTGTTGCTT
TGCTGGCCCTTGGTGTCTATTTTATTTTCGTGTACCTTTTCTTGGGCGTA
AGTTAGCCTGTGACCACGGGAACTGACCGCATCAAGTGTTGGATTAGTAC
GGATATTGAGAGGTGGATGGAGAGATCGGAACGGTTTTTAATGTGAAGAA
AACATTGTTTTTAGACCACGAAAACTTGCACACGTTGTTCTGGAAGGCAT
TAATTACCTAATACTCCAAGAATGTTTTTTTTTATTGTCGAGATATTTAG
CCGGAATCTATCCCCCCCCGGGTCAAATAGGTCTACCGCGTCGTTTTCAC
TACCGTAGGTGATGCAAGATACCACCCCCCCTGCTGGGCAGATTTGTTTT
CACGGCTCGGATTCCTCCCCAGCAAAAAGAATGCCAGTGCTGAAAGAGGT
TGTGTCGCGTTGGAAAGATCAAAATAGTCGAGGGTTAAATGTCCGAAAAT
GTGTCGTTTGGTGCTGGCAGGCACCCTCTTCGTTTCGGGGTAATGGAGCT
CTAGAAGTCGGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGGGGGCA
CCGTTGCTGTTTTTGTGGGGTGGTTTTTATTATCTGTGTTTAGTTCTGTT
GTCGCGATCACGGACCGAAACTCTGGCAAGATGCCCGCGCCTATAGCGCT
CGCTGGCCTAATTTGTTTTTGTTTTTATTTTTCTTCTTCACATTTATTTC
GAGTGCTCGACGGGCTCCTTGCCACGAGGGGCGTCTTGCCAGAGTACTAC
TGAACGGTCGTAGGTAGTCATACAGGCTTCATGTGAGGGGAAAATTAATA
TATTAATAAAACGCTGTTGCTCGTGAATTCTCCGTCGTCGCCGTCGCTTG
TTCCGGTCGAGGCGTTAGGCAGATACCATCGTAGTCAGTGGCTTGCCGTC
TCTCGTATGTACGTACATAACATAGGTACCACTGGCCTGCTTGCTGAAAG
CTGCTCCCCGCAAACGCGCACGTACCATAGATTGCCATCCATCTTTCGTA
TGTACATCCATATACATATATGACATACTTCGCACGTACATACATAGTAA
CGTTTCTACATATATATGTAGCGTACATACATACAACAACACTTGCCTGA
CACAAGAGAAATTCTCTCCGGCAAGCGCATCGAGGGTTTCCGGTTGGTTG
GGTGGGCGGGGATGTTTTGCCTGCCCTCACGTACGTCACTAGTACATAAA
TACAACGAGGAACCAACAACCACTCGCGATAAACATCTCAGGCAGGGACC
GCAGAAGGGGGTCCAACCCCATCTCTTGTGTGACCCCGGTTGGGTCGTCT
AGCTAGTCGTAGTGGAGGATGGGGACCAGTGGCGCAGATGACAAATATCC
CAATGATGGGCGAAAAAAACAAAAAACAAAAAAAAACACGCAAATCTTAA
TCTTCCCGCATTGTTTTTTTGTTTTTTTGTTTTTTTTTGCTTGTGGCTCG
GAACAAAGCAGGTCGACCTCGGCGACAAGAGGTCCCTCTACGATACCCCG
GGGCTCCTCCTGCCGCACACGCTCACCTCCCGCCTGAACGCGGAGGAGCT
CAGGGCCGCCATCCCTAAGAAGACGGTGCGTTTGGGGAAGGAACACAGCC
ATTTGTTTCACTATTATTTACTGCATGGGCGGTATATGGTGTATCTTTCA
ACGTAACAGTTATTTTTTCATTTCCTCCTTATTTTTTCAACGCTAAATCA
TAGGTACATTGTGCATGCACGTATTATGGAGCATGTGGGTGTGTGCTTAG
AATAACCTCGGCCTCTCGAGGCGCCTCGAACATGCTCCTGTGCGTTCGTG
TGTGTGCTGCGTGCGTGTGTGTGTGTTTATGTTGCCTTTGTGCCTTTCGC
CCTTTTTTCACGTGCCCTGCGTGCGACCTTGCTGTGCAATAACCACGGGC
CGCTGGGTCCTAGCAAGGGCTAAATACGTATGTAGCCTGGGGCACAACAG
ACGAAACTTTAATATTTTGTGTTATGAAGCGACGGGGAGCTCAGCCGTCG
CATGTTGAGTTTCCAGACCTCGCAAAGAGGTGGGGGTATTGGTTGGGCCA
GCTGGTTGTCGTTCCTCTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTG
TTTTATTTTTGTTGTTGTTCTGTGTTTTTGTTTTTTCCCACCAGGTGGAT
CACGTGACATTCCGCCTAGGGGGGGGCAAGGTGGTGCTGCTGGGGGGGCT
TGCCAGGGTGGAGGTGGTGACGGGCCGACCGTTCCTGCTGACCTTCTTCG
TCTCAAACGACGTGCGCCTCCACCCCACCGATATCACAAGGTATGGGCCG
CAGTTCGCTGCTGCTGCTGCTGCTGCTGCTGTTGGTGGTGGCGATGGTGG
TGGTGGGGTTATTGCTGTTTTGTTTTTGTTTTTTGTTCGCATTTATTTCC
AGTGCTTGATGGCCTCCTTGCCACGAGAGCATCTTGCCAAAAGAGTACTG
AACCGTGGTCACACAGAAGGGTTGCTTTACCCGAGGCTCCCACTCCCCCC
TCCGGCGGTGCTTGCCGAGGGTTTTTGTCGCGAGAAGGGTTCAGCCGTCC
CTTTCCCTCGTCGACGGTGAGGTCGAAGGTTGTGTACACACGCTAAGCGC
TACCCACTGACAGGGACGAAAGCGAGGGAAAAAACTCGCTTTTTGCGCGA
AAAAGTCCCTTCCGCCGGGTTGCGAACCCGTGACCTTCCTGCTTGAAGGT
GTTTCGGAGACACCAACTAGACTCTACCGGGGCGATTAGTCATTTCTTTG
TGGGCCTCTAAAAATAGTAAATAGGCGTTGTTGTCGACGAAAAGTGTCTA
TCGAGTTGGGTTTGTTGTTGCACCGAGAGGTCTCTCTTTTTTACTAATTC
CTTCGTTTGCTGTCGTCGTCGTCTTCGTCGTCGTTGTTGTTGTTGTTGTT
GTTGTTGTTGCTGTCGTGATGTTTTTGTGTCCAGGGTGGACGACATGCTG
TCCCAGCATGTCGGCAAGGACCAGATGGTTTTCCCCCCCTTCGAGCCCGA
GAGGGTGGAAGAGCTCGGTCCGCTGGTGCCCACGGACTTTGACATCGCCG
GCGCCGGGTGGAGAGAGGTAAGCAAACCCCGCGCGGCTGAGTCGACCAAT
CAGGCGGCTGAGTCGACCAATCAGCGACTCGATCTGTTAGCGCGCGGTGA
TCCTCGCCCTTAGCGAGCGAGGTATGCGTCGAGTGTAGGTGATAGATACA
CAGCTGTGTAGACACACACACATAAGCTGTATCGCTGCCTCCTCGCAGGG
GGGTATACGCGGTCCTTCTCTCTCTCAGGGGTCCACTCGTACCGACCCCC
TACATACCGTATCCTAACTACACACGTGACCCCCGGAGGGGACACCCAGA
TCGAACTCATATCCAAAGCACCACGAACAGGATCGACCAGTGCCAGGAAC
GCCAGGGGTGGGTGGTTGAGGTCACTTGGGTGAGGTTTCCAAGAGGCAAC
TCATCCGGCGGGTTAGGCAGGCAGTTCTGTAGTTGGCCGAGGACTTGGGC
GTGTGTAGGCTGCGGCAAGACCTTGCGATGGCTCGTGAGGGTGGTTGGTT
CTCGTTGGCAAATATGAAAAAGCTAAATTACATACATACATACATATGGT
ACAAAGTATGTACATACTCTGTGGGGGGCTTGGGGAAAGGAACCCTTCTG
TGTGACCACGGTTCAGTACTCTGGCAATATGTCCTCGTGACAGGGAGCCG
GCCCATCGAGCACTGGAAATAAATGTGAAAAACAAGAAACAAAAAAAAAT
CTTCGTTCCTTTTTTTTTTCAACAAAATGTTCCGCGAAACGTCAACCGTA
TGTTTGCGTCCGACCAGACCCCGGTGAGGAAGCTGGTCCAGGGGTACATA
CTCTTTTTTTTTTTTTTTATAAACAAATGTCCTATCTACAAAACGTCAGC
GGTGTGTTCACCTTCGACCAGACCGGTGAAGAAGCTGCTCCAGGGGGGCA
CGACTGCTGTCGTATTCTACTAGACACATTAAAAAAAAATACAAATACCT
ATGTAGAAGTATAGACTATGTTTTTTTTTAGTACTAATCCAACTACATAC
GCCCAGCCCGTGAAACAAGTATTTCCAGGGGGGTATTGTACTACTGTACA
TACCGTTGTCGGGAGGGACACTAAATTAGCCCCCGTCCCCCGTCCCCCGC
CCCCGCCGCCACCACCGCCGCCGCCGCTGCCTGTTTTGGAACGCTTGCTT
GAAAAACGAAACAGGCGGCGGCGGACGTGGTGATCGCCGGTCTGGGCTGG
GTCAGCGTCACCGGGGCGGGGCCGGTGACCCTGCGCGTGTGGGCGCCCCG
CGGGGTGCTGGTCATGGCGAGGGAGCCCCTGCTGCCGTACGAGTCCTGGG
AGACCACCGCCAAGTTCACCGGCGGCGCCACCGTCAAGAAGGGCCGGAAG
AAGCAAGGGCGACGCGCGTAGGGATAGGGGTAATGCGATGCCGGCCGGGC
TGTCACCACACGGCTGCAGCTGGCTTGATTTTTGGCCTGGCGCGGAACGT
GATGAAGCCCACGAAGCCCTGCTCTTTTAGTTGTAGGCCTTGACCTTATA
TTTATGCGCGCGAATAATTGCGCATAAGTTATGCTCGATTTTCAGGAGCA
TAACTGAGAGTATTTGCCAATCTAAGCATAATGTCAGCATAATTCACCGT
TTTTTGGAGCATAATGAGCATAATTGGGGTGTTTTTGAGGCGGATGTGCG
TGCGCTTACAATAAAAAAAAGCAAAAAAATATGAAAAATCCGCGTATAAG
GTCAAAGCCTATTTTGTTGAAGAACGTATGTATATACAAGGTTCCCCTTC
GGGAGGTCAGCGCGTGCCTCCCGGGGGTGACGCAAGTCGAAATACCCACA
AACAACGTAGGACACGAGGTAGCACTTCACACAAAGAGTGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8191:7..5898-

>mRNA_L-elsbetiae_contig8191.17185.1 ID=mRNA_L-elsbetiae_contig8191.17185.1|Name=mRNA_L-elsbetiae_contig8191.17185.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig8191:7..5898- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGTCCCAGCATGTCGGCAAGGACCAGATGGTTTTCCCCCCCTTCGA
GCCCGAGAGGGTGGAAGAGCTCGGTCCGCTGGTGCCCACGGACTTTGACA
TCGCCGGCGCCGGGTGGAGAGAGATGCTGTCCCAGCATGTCGGCAAGGAC
CAGATGGTTTTCCCCCCCTTCGAGCCCGAGAGGGTGGAAGAGCTCGGTCC
GCTGGTGCCCACGGACTTTGACATCGCCGGCGCCGGGTGGAGAGAGGCGG
CGGCGGACGTGGTGATCGCCGGTCTGGGCTGGGTCAGCGTCACCGGGGCG
GGGCCGGTGACCCTGCGCGTGTGGGCGCCCCGCGGGGTGCTGGTCATGGC
GAGGGAGCCCCTGCTGCCGTACGAGTCCTGGGAGACCACCGCCAAGTTCA
CCGGCGGCGCCACCGTCAAGAAGGGCCGGAAGAAGCAAGGGCGACGCGCG
TAGGCGGCGGCGGACGTGGTGATCGCCGGTCTGGGCTGGGTCAGCGTCAC
CGGGGCGGGGCCGGTGACCCTGCGCGTGTGGGCGCCCCGCGGGGTGCTGG
TCATGGCGAGGGAGCCCCTGCTGCCGTACGAGTCCTGGGAGACCACCGCC
AAGTTCACCGGCGGCGCCACCGTCAAGAAGGGCCGGAAGAAGCAAGGGCG
ACGCGCGTAG
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