mRNA_L-elsbetiae_contig819.17182.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig819.17182.1
Unique NamemRNA_L-elsbetiae_contig819.17182.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig819.17182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig819contigL-elsbetiae_contig819:2856..5174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1723
Cds size1125
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig819.17182.1prot_L-elsbetiae_contig819.17182.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig819 3385..5105 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.4390852-UTR-L-elsbetiae_contig819:2855..33841622816902.4390852-UTR-L-elsbetiae_contig819:2855..3384Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig819 2856..3384 -
1691683899.4786425-UTR-L-elsbetiae_contig819:2855..33841691683899.4786425-UTR-L-elsbetiae_contig819:2855..3384Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig819 2856..3384 -
1622816902.473145-UTR-L-elsbetiae_contig819:5105..51741622816902.473145-UTR-L-elsbetiae_contig819:5105..5174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig819 5106..5174 -
1691683899.523947-UTR-L-elsbetiae_contig819:5105..51741691683899.523947-UTR-L-elsbetiae_contig819:5105..5174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig819 5106..5174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.4502273-CDS-L-elsbetiae_contig819:3384..34451622816902.4502273-CDS-L-elsbetiae_contig819:3384..3445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig819 3385..3445 -
1691683899.4927871-CDS-L-elsbetiae_contig819:3384..34451691683899.4927871-CDS-L-elsbetiae_contig819:3384..3445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig819 3385..3445 -
1622816902.4632432-CDS-L-elsbetiae_contig819:4041..51051622816902.4632432-CDS-L-elsbetiae_contig819:4041..5105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig819 4042..5105 -
1691683899.5121064-CDS-L-elsbetiae_contig819:4041..51051691683899.5121064-CDS-L-elsbetiae_contig819:4041..5105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig819 4042..5105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig819.17182.1

>prot_L-elsbetiae_contig819.17182.1 ID=prot_L-elsbetiae_contig819.17182.1|Name=mRNA_L-elsbetiae_contig819.17182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=375bp
MMKCGYPSCNRRPGYSVEGSKTAEVCSKHAKEGMVNVVGKNRRCAHPSCN
KCPTYGVEGSKMVEFCSGHAREGMVDVKNRRKCDHPSCNKQPSFGVEGSK
VEFCAGHAKKGMVYVFNRRRCAHPSCSKYPTYRMDGSKTAEFCAEHKKEG
MVNVVGKNKRCGHSSCGKHSSYGVEGSKTAEFCSKHAKEGMVNVVSKRCA
YSSCKKHPVYGVEGSKTAKFCAEHKKEGMANVVGRRCAHPSCNKHATCGV
EGSKTAEFCAEHKKEGMMSTRWGRIFSRETNSAGGVSKGGGSAVDCTGSC
VGETIITREDRASPTAEGENPSTSKYTERTSAPAMVKAEGDVSVSALSGA
AEAVRRTTGGQKKRRREGAAPSYP*
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mRNA from alignment at L-elsbetiae_contig819:2856..5174-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig819.17182.1 ID=mRNA_L-elsbetiae_contig819.17182.1|Name=mRNA_L-elsbetiae_contig819.17182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2319bp|location=Sequence derived from alignment at L-elsbetiae_contig819:2856..5174- (Laminarionema elsbetiae ELsaHSoW15)
CCTCGTCCATAGCCGCGTGATGTAGGCACTCCACAGCAGCGCTGCTAACG
CACTCTCCGTCATAACGCAATGATGAAGTGCGGCTACCCTAGCTGCAACA
GGCGCCCGGGGTACAGCGTGGAAGGAAGCAAGACGGCGGAGGTCTGCTCT
AAACACGCGAAGGAGGGAATGGTGAACGTCGTCGGCAAGAACAGGAGGTG
CGCCCACCCTAGTTGCAACAAGTGCCCGACGTACGGCGTGGAGGGTAGCA
AGATGGTGGAGTTCTGCTCTGGCCACGCGAGGGAAGGAATGGTGGATGTA
AAGAATAGGAGGAAGTGCGACCACCCTAGTTGCAACAAGCAGCCGTCGTT
CGGCGTAGAGGGTAGCAAGGTGGAGTTCTGCGCTGGACACGCCAAGAAGG
GAATGGTGTATGTCTTCAACAGGAGGAGATGTGCCCATCCCAGTTGCAGC
AAGTACCCGACGTATCGCATGGACGGTAGCAAGACAGCAGAGTTCTGCGC
TGAACACAAGAAGGAGGGGATGGTGAACGTCGTCGGCAAGAACAAGAGGT
GCGGCCACTCTAGTTGCGGCAAGCATTCGTCGTACGGCGTGGAAGGTAGC
AAGACGGCGGAGTTCTGCTCTAAACACGCCAAGGAGGGAATGGTGAACGT
GGTCAGCAAGAGATGCGCGTACTCTAGTTGCAAAAAGCACCCGGTGTATG
GCGTGGAAGGTAGCAAGACGGCGAAGTTCTGCGCTGAACACAAGAAGGAG
GGAATGGCGAACGTGGTCGGCAGGAGGTGCGCTCACCCTAGTTGCAACAA
GCACGCGACGTGTGGCGTGGAAGGTAGCAAAACAGCGGAGTTCTGCGCTG
AACACAAGAAGGAGGGAATGATGAGCACAAGATGGGGCCGGATTTTCAGT
AGAGAAACCAACAGTGCTGGCGGCGTGAGCAAAGGTGGAGGTTCAGCCGT
AGATTGCACCGGGAGCTGTGTTGGAGAGACCATAATAACGCGCGAAGACC
GCGCGTCTCCGACGGCAGAAGGGGAGAACCCCTCCACCAGCAAGTACACC
GAGCGAACCAGCGCCCCTGCCATGGTGAAGGCTGAAGGAGACGTGTCTGT
GTCCGCCTTATCGGGTGCCGCGGAAGCGGTCAGGTACGTTGAGAATATCG
GCTGTGTGGTTGTTGACGCAGACCCGAGAAGGACAGCGTGTCTTGTTTGA
ACTTGCCTGATGTATCTGCTACGAACACGCGAGCAAGGAATCCGGCAGCA
GGGGTGTTGTTTGTCAACCGATCGCCTACGACAGTAAACCACTACTGTGT
GCTTTTGTTCGTGAGCTATCGACATGGATAGGTCGAGGTTGCAAGGAGAG
AGCTCGAAAATATTTGGTCCGTACCACGTATGGGACGTTCTGCCGGTGCT
TACTTGTCTTTGATGCCGACCACGCCGTATACTCTGACACGCAACATAAC
CACTGCCGTATTGCCGTGCCGACTGCGACCTTGAGTGTCGCGATCGCGGC
GTATTTATAACCGTTGGTTTTCCCGTTGTCTGAACCCGGGTTCAGTTTCA
GTTTCCTGCCAGCGCGGTGTTCCTGTCGTTCCAATTCTGACGTTCCCGTC
ACATGTATGTCCTGGCTGGTCTTTGTCAACCGCAGAAACTACATATATTT
TCCGTCCAACACAAGGCGCTTGACGTTGCCGCCTTTGAATGTGCCGTCCG
TTGGGTTTTCTCCTGTTTGGTTCGATCAGGCGAACCACTGGCGGGCAGAA
GAAGAGGCGCCGGGAAGGAGCAGCGCCGAGTTACCCTTAAACAGTGCCAT
TTGATGCTCTGTTGGGCAACGAGCCCAACGCGGAGCTCGAACAATGCGGG
TGTCCGGGAGTGGCAGCTAGCTGTGTACAGCTACTGCACCTGCTGGTCAA
GCTTGGGATGCGTCTGAGCCCTGGAGGGTGGCGGTTCCTTTGGTTTTGGT
GTGCGTGTCTTAGTCGCTACAACCAGCGACGCCTTTTCATGCGATCTGTG
AGCGCCCGAGCAGCTAGCTGTGCACGCGCGTGTTACATCCTTGTCTCTTG
TGTTGAGTTTGAGGCCGCCGTGGAGTACGCTGTGTGGCGCCGCATGTGTT
CGTTCATGCCATAGATAGGCCGTTACGAAAGAGAGGAGCAAAGCTGGACA
AAAGAAGGCTGCGAAGAGAATGTGACGGCGACAAACCACTTGCGTGCTTC
GACTTTATTGATTTACATGAGAACGTTGATGACGTTGATGGCCGTAGAAC
AGCAACGGGTTCTGGTGATTACTATGTACGCTAAATAAAGAAGTACAACC
TAACCTTTCTTCGTTCCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig819:2856..5174-

>mRNA_L-elsbetiae_contig819.17182.1 ID=mRNA_L-elsbetiae_contig819.17182.1|Name=mRNA_L-elsbetiae_contig819.17182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2250bp|location=Sequence derived from alignment at L-elsbetiae_contig819:2856..5174- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAAGTGCGGCTACCCTAGCTGCAACAGGCGCCCGGGGTACAGCGT
GGAAGGAAGCAAGACGGCGGAGGTCTGCTCTAAACACGCGAAGGAGGGAA
TGGTGAACGTCGTCGGCAAGAACAGGAGGTGCGCCCACCCTAGTTGCAAC
AAGTGCCCGACGTACGGCGTGGAGGGTAGCAAGATGGTGGAGTTCTGCTC
TGGCCACGCGAGGGAAGGAATGGTGGATGTAAAGAATAGGAGGAAGTGCG
ACCACCCTAGTTGCAACAAGCAGCCGTCGTTCGGCGTAGAGGGTAGCAAG
GTGGAGTTCTGCGCTGGACACGCCAAGAAGGGAATGGTGTATGTCTTCAA
CAGGAGGAGATGTGCCCATCCCAGTTGCAGCAAGTACCCGACGTATCGCA
TGGACGGTAGCAAGACAGCAGAGTTCTGCGCTGAACACAAGAAGGAGGGG
ATGGTGAACGTCGTCGGCAAGAACAAGAGGTGCGGCCACTCTAGTTGCGG
CAAGCATTCGTCGTACGGCGTGGAAGGTAGCAAGACGGCGGAGTTCTGCT
CTAAACACGCCAAGGAGGGAATGGTGAACGTGGTCAGCAAGAGATGCGCG
TACTCTAGTTGCAAAAAGCACCCGGTGTATGGCGTGGAAGGTAGCAAGAC
GGCGAAGTTCTGCGCTGAACACAAGAAGGAGGGAATGGCGAACGTGGTCG
GCAGGAGGTGCGCTCACCCTAGTTGCAACAAGCACGCGACGTGTGGCGTG
GAAGGTAGCAAAACAGCGGAGTTCTGCGCTGAACACAAGAAGGAGGGAAT
GATGAGCACAAGATGGGGCCGGATTTTCAGTAGAGAAACCAACAGTGCTG
GCGGCGTGAGCAAAGGTGGAGGTTCAGCCGTAGATTGCACCGGGAGCTGT
GTTGGAGAGACCATAATAACGCGCGAAGACCGCGCGTCTCCGACGGCAGA
AGGGGAGAACCCCTCCACCAGCAAGTACACCGAGCGAACCAGCGCCCCTG
CCATGGTGAAGGCTGAAGGAGACGTGTCTGTGTCCGCCTTATCGGGTGCC
GCGGAAGCGGTCAGATGATGAAGTGCGGCTACCCTAGCTGCAACAGGCGC
CCGGGGTACAGCGTGGAAGGAAGCAAGACGGCGGAGGTCTGCTCTAAACA
CGCGAAGGAGGGAATGGTGAACGTCGTCGGCAAGAACAGGAGGTGCGCCC
ACCCTAGTTGCAACAAGTGCCCGACGTACGGCGTGGAGGGTAGCAAGATG
GTGGAGTTCTGCTCTGGCCACGCGAGGGAAGGAATGGTGGATGTAAAGAA
TAGGAGGAAGTGCGACCACCCTAGTTGCAACAAGCAGCCGTCGTTCGGCG
TAGAGGGTAGCAAGGTGGAGTTCTGCGCTGGACACGCCAAGAAGGGAATG
GTGTATGTCTTCAACAGGAGGAGATGTGCCCATCCCAGTTGCAGCAAGTA
CCCGACGTATCGCATGGACGGTAGCAAGACAGCAGAGTTCTGCGCTGAAC
ACAAGAAGGAGGGGATGGTGAACGTCGTCGGCAAGAACAAGAGGTGCGGC
CACTCTAGTTGCGGCAAGCATTCGTCGTACGGCGTGGAAGGTAGCAAGAC
GGCGGAGTTCTGCTCTAAACACGCCAAGGAGGGAATGGTGAACGTGGTCA
GCAAGAGATGCGCGTACTCTAGTTGCAAAAAGCACCCGGTGTATGGCGTG
GAAGGTAGCAAGACGGCGAAGTTCTGCGCTGAACACAAGAAGGAGGGAAT
GGCGAACGTGGTCGGCAGGAGGTGCGCTCACCCTAGTTGCAACAAGCACG
CGACGTGTGGCGTGGAAGGTAGCAAAACAGCGGAGTTCTGCGCTGAACAC
AAGAAGGAGGGAATGATGAGCACAAGATGGGGCCGGATTTTCAGTAGAGA
AACCAACAGTGCTGGCGGCGTGAGCAAAGGTGGAGGTTCAGCCGTAGATT
GCACCGGGAGCTGTGTTGGAGAGACCATAATAACGCGCGAAGACCGCGCG
TCTCCGACGGCAGAAGGGGAGAACCCCTCCACCAGCAAGTACACCGAGCG
AACCAGCGCCCCTGCCATGGTGAAGGCTGAAGGAGACGTGTCTGTGTCCG
CCTTATCGGGTGCCGCGGAAGCGGTCAGGCGAACCACTGGCGGGCAGAAG
AAGAGGCGCCGGGAAGGAGCAGCGCCGAGTTACCCTTAAGCGAACCACTG
GCGGGCAGAAGAAGAGGCGCCGGGAAGGAGCAGCGCCGAGTTACCCTTAA
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