mRNA_L-elsbetiae_contig8185.17179.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8185.17179.1
Unique NamemRNA_L-elsbetiae_contig8185.17179.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8185.17179.1 vs. uniprot
Match: D7FW89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW89_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 3.370e-35
Identity = 94/167 (56.29%), Postives = 106/167 (63.47%), Query Frame = 1 
Query:    1 MNLPPSSLLGRLEAFLPEMEKANQTTEKLAQEGKLEVLDGSLEVAGSDQHREETEESDDXXXXEGVAXXXXXETEPGAAPPT---RTVQLDFALGDFDDTPIAKMEQEKEMAASQAEGLEAGT--GEEQEDTAEDSGVARLLRVVPEAPVDSGEPREQPRKPLIQEL 486
            MNLPPSSLLGRLEAFLPEMEKANQ TEKLAQEGKLEVL        SD+  E  E +DD      V          GAA      RTVQLDFALGDFDDTPIAKMEQEKE AA +A G++AG   G E+E+  E+ G      VVP A      P++ P +PLI+EL
Sbjct:    1 MNLPPSSLLGRLEAFLPEMEKANQKTEKLAQEGKLEVLXXXXXXXXSDKQTEGAEGTDDEAGDSEVEEEEEGGQVEGAAGVVAAGRTVQLDFALGDFDDTPIAKMEQEKE-AAREAGGVDAGATGGVEEEEGVEEGGDV----VVPGA----AHPKK-PSQPLIEEL 157
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BLAST of mRNA_L-elsbetiae_contig8185.17179.1 vs. uniprot
Match: A0A836CNZ4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNZ4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.370e-15
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    1 MNLPPSSLLGRLEAFLPEMEKANQTTEKLAQEGKLEVLDGSLEVAGSDQHREETEESDDXXXXEGVAXXXXXETEPGAAPPT---RTVQLDFALGDFDDTPIAKMEQ 312
            M LPPSSLLG+LEAFLP++ +AN+  ++   EG+ E +D  L +  +D + EE+E SD       VA         GA       + VQL FALGDFDDTP+A+ E+
Sbjct:    1 MELPPSSLLGKLEAFLPKLAQANRDLQQQTLEGQAETIDAHLALDAADGNDEESESSDGEGDV-AVAGASARAINEGAGDMQGGGKVVQLSFALGDFDDTPVAQFEE 106
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8185.17179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW89_ECTSI3.370e-3556.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CNZ4_9STRA6.370e-1543.93Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8185contigL-elsbetiae_contig8185:3535..4802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_003810.1
Exons2
Model size652
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8185.17179.1prot_L-elsbetiae_contig8185.17179.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8185 3535..4639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.2746956-CDS-L-elsbetiae_contig8185:3534..37951622816902.2746956-CDS-L-elsbetiae_contig8185:3534..3795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8185 3535..3795 +
1691683899.3767498-CDS-L-elsbetiae_contig8185:3534..37951691683899.3767498-CDS-L-elsbetiae_contig8185:3534..3795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8185 3535..3795 +
1622816902.2884452-CDS-L-elsbetiae_contig8185:4411..46391622816902.2884452-CDS-L-elsbetiae_contig8185:4411..4639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8185 4412..4639 +
1691683899.3873918-CDS-L-elsbetiae_contig8185:4411..46391691683899.3873918-CDS-L-elsbetiae_contig8185:4411..4639Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8185 4412..4639 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.303039-UTR-L-elsbetiae_contig8185:4639..48021622816902.303039-UTR-L-elsbetiae_contig8185:4639..4802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8185 4640..4802 +
1691683899.3982747-UTR-L-elsbetiae_contig8185:4639..48021691683899.3982747-UTR-L-elsbetiae_contig8185:4639..4802Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8185 4640..4802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8185.17179.1

>prot_L-elsbetiae_contig8185.17179.1 ID=prot_L-elsbetiae_contig8185.17179.1|Name=mRNA_L-elsbetiae_contig8185.17179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MNLPPSSLLGRLEAFLPEMEKANQTTEKLAQEGKLEVLDGSLEVAGSDQH
REETEESDDEETTEGVAEQEEDETEPGAAPPTRTVQLDFALGDFDDTPIA
KMEQEKEMAASQAEGLEAGTGEEQEDTAEDSGVARLLRVVPEAPVDSGEP
REQPRKPLIQEL*
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mRNA from alignment at L-elsbetiae_contig8185:3535..4802+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8185.17179.1 ID=mRNA_L-elsbetiae_contig8185.17179.1|Name=mRNA_L-elsbetiae_contig8185.17179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1268bp|location=Sequence derived from alignment at L-elsbetiae_contig8185:3535..4802+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCTGCCTCCGAGCTCCTTGCTCGGGCGGCTGGAGGCATTCTTGCC
CGAAATGGAGAAGGCGAACCAAACCACTGAAAAGCTAGCGCAGGAGGGAA
AGCTCGAGGTCCTCGATGGCAGTCTCGAGGTTGCAGGCTCCGACCAACAT
AGGGAGGAGACGGAGGAGTCTGACGATGAGGAGACAACGGAGGGGGTAGC
AGAGCAGGAGGAGGACGAGACAGAGCCAGGGGCGGCGCCTCCCACCCGGA
CTGTGCAGCTCGTGAGTCTGGCATCACGTAGATACATAGCACATGAAAAG
TACGGGATTCGGCACGGGACCCAAGGGTTATTCCCGCAGGACGTATATAC
ACCATCCCTGGGGTCAAGTCTTATATACACCAGTAGCTCAGTACAGCCAC
CTATCTAGACCTCAACCCGGCACACCAACCTAGCCTGGTGTGTGGGTGTG
GGTAAGGGTTTAAGGTGGTTCGGGTGCGCGTTAGACCGAGCGCCGTGGTG
AAGCAAGAGGGCCGGAAACCTAGCGTAGGCCTTGTTTTTCGCGTCTACCT
CCAACATAAACCTAGGTTTATTACTCCGCTGGTGTCAAAGCTATACACCA
GGGCTTGTGTATGGACGCGGGCTGGGGTTATTCCATTCCAATGCGTACAT
TCACCCACGAGGCTGGATCAATGAGTTTTTTTTCAGTAGGATTCCACTTT
TGCAGCGCACTCAAAAGTGTACTATAAATATCTCAGCACTCTCATTCTCG
TAATTGCTGTTCAATTTCCTGGACATCGTAGGCATGCTGTCTAGAATAGG
TGTATGCTCTCGCGCGAACCTCACCCTCTCGCTCGAACTGTGTCTTGTGT
GATGGGGTACATGCGTGCCCTACTCAGGACTTTGCCCTTGGAGACTTCGA
CGACACCCCGATAGCCAAAATGGAACAAGAGAAGGAGATGGCCGCTAGTC
AAGCGGAGGGGTTAGAAGCCGGCACCGGAGAGGAACAGGAGGATACGGCG
GAGGACAGCGGGGTGGCACGTTTGTTGCGCGTTGTGCCAGAAGCGCCAGT
GGATTCTGGGGAACCGCGGGAACAACCGCGTAAACCGTTGATACAAGAGT
TGTGAGTTGGCAACAACTCCGGCGAATATGAGTGAAATGTTTCTAGCGTT
GGAATAGTCCGCCTGGGGGAGCGAGCCCCGGCCTCGTCTGAGTACCCTTC
CTTCCTTTGATGTACATACACAGGAACAAACCGGGTGTGGATGAGGCAGA
TTACGGTGGAAATCAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8185:3535..4802+

>mRNA_L-elsbetiae_contig8185.17179.1 ID=mRNA_L-elsbetiae_contig8185.17179.1|Name=mRNA_L-elsbetiae_contig8185.17179.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig8185:3535..4802+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCTGCCTCCGAGCTCCTTGCTCGGGCGGCTGGAGGCATTCTTGCC
CGAAATGGAGAAGGCGAACCAAACCACTGAAAAGCTAGCGCAGGAGGGAA
AGCTCGAGGTCCTCGATGGCAGTCTCGAGGTTGCAGGCTCCGACCAACAT
AGGGAGGAGACGGAGGAGTCTGACGATGAGGAGACAACGGAGGGGGTAGC
AGAGCAGGAGGAGGACGAGACAGAGCCAGGGGCGGCGCCTCCCACCCGGA
CTGTGCAGCTCATGAACCTGCCTCCGAGCTCCTTGCTCGGGCGGCTGGAG
GCATTCTTGCCCGAAATGGAGAAGGCGAACCAAACCACTGAAAAGCTAGC
GCAGGAGGGAAAGCTCGAGGTCCTCGATGGCAGTCTCGAGGTTGCAGGCT
CCGACCAACATAGGGAGGAGACGGAGGAGTCTGACGATGAGGAGACAACG
GAGGGGGTAGCAGAGCAGGAGGAGGACGAGACAGAGCCAGGGGCGGCGCC
TCCCACCCGGACTGTGCAGCTCGACTTTGCCCTTGGAGACTTCGACGACA
CCCCGATAGCCAAAATGGAACAAGAGAAGGAGATGGCCGCTAGTCAAGCG
GAGGGGTTAGAAGCCGGCACCGGAGAGGAACAGGAGGATACGGCGGAGGA
CAGCGGGGTGGCACGTTTGTTGCGCGTTGTGCCAGAAGCGCCAGTGGATT
CTGGGGAACCGCGGGAACAACCGCGTAAACCGTTGATACAAGAGTTGTGA
GACTTTGCCCTTGGAGACTTCGACGACACCCCGATAGCCAAAATGGAACA
AGAGAAGGAGATGGCCGCTAGTCAAGCGGAGGGGTTAGAAGCCGGCACCG
GAGAGGAACAGGAGGATACGGCGGAGGACAGCGGGGTGGCACGTTTGTTG
CGCGTTGTGCCAGAAGCGCCAGTGGATTCTGGGGAACCGCGGGAACAACC
GCGTAAACCGTTGATACAAGAGTTGTGA
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