mRNA_L-elsbetiae_contig8180.17177.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8180.17177.1
Unique NamemRNA_L-elsbetiae_contig8180.17177.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8180.17177.1 vs. uniprot
Match: D8LSH3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH3_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 4.900e-5
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 3 
Query:   72 KGRRERRSRDSGRRNGKDKDAVHHELKKERHLRKQYMEDKSAAEAEIARLKEALDTA 242
            KG R R       R+   K+ V  +LKKER LRKQY E+KS AEAEIARLK ALD A
Sbjct:  733 KGHRRRSGEGGXGRDRDGKERVSQDLKKERQLRKQYQEEKSTAEAEIARLKAALDAA 789
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8180.17177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSH3_ECTSI4.900e-557.89Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8180contigL-elsbetiae_contig8180:4287..4967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.1891012-CDS-L-elsbetiae_contig8180:4286..43951622816902.1891012-CDS-L-elsbetiae_contig8180:4286..4395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8180 4287..4395 -
1691683899.326087-CDS-L-elsbetiae_contig8180:4286..43951691683899.326087-CDS-L-elsbetiae_contig8180:4286..4395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8180 4287..4395 -
1622816902.1998892-CDS-L-elsbetiae_contig8180:4809..49671622816902.1998892-CDS-L-elsbetiae_contig8180:4809..4967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8180 4810..4967 -
1691683899.342443-CDS-L-elsbetiae_contig8180:4809..49671691683899.342443-CDS-L-elsbetiae_contig8180:4809..4967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8180 4810..4967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8180.17177.1prot_L-elsbetiae_contig8180.17177.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8180 4287..4967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8180.17177.1

>prot_L-elsbetiae_contig8180.17177.1 ID=prot_L-elsbetiae_contig8180.17177.1|Name=mRNA_L-elsbetiae_contig8180.17177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MPAGEGRRRKEWRAAAAAAAAAASRGGGRGDRGTAVEGTAKTRMRFTTSS
RRSATYASSTWRTNPRQKPRSRGSRRRLIRHRARWGGRR
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mRNA from alignment at L-elsbetiae_contig8180:4287..4967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8180.17177.1 ID=mRNA_L-elsbetiae_contig8180.17177.1|Name=mRNA_L-elsbetiae_contig8180.17177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=681bp|location=Sequence derived from alignment at L-elsbetiae_contig8180:4287..4967- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCTGGAGAGGGGCGACGGAGAAAAGAGTGGAGAGCAGCAGCAGC
GGCGGCGGCGGCGGCGGCGTCAAGGGGAGGAGGGAGAGGAGATCGAGGGA
CAGCGGTAGAAGGAACGGCAAAGACAAGGATGCGGTTCACCACGAGCTCA
AGAAGGAGGTAAGTTACCTGATTTACTGCAAGATAGTATTGTGTAAATTA
GCCTCACGGCTGGCTGCGCTTCTGGGCGTCTTGTGTCTTGGCCCGCTTTT
TTTTTTACCACCGCCGTGACGGGTCAACTTTTACCCGCGCACCGAAACTG
CCCCTGGATACATCGGACGCACGTTGCGTTTCGTGGAAAGCTGTCACGCT
TATTTTACGTTGGCAAGCATTGTAATATTGTTACAAAAAATTGGGGCCTT
CCGCCCCCTCCCCCCTCCCCCCCCGCGTGCCGCGTGCCGCGCGCGCCACC
GGCGGCACCGGCTTTCGCGGAAAACGCTCCCCCTTTTTATTTCTGACTAC
TGCTGAAGCCCGCTCACGCGCGCTCCCCTCCCCTGCCCTTCGTTCATCCG
GTGCTCTCGCTCGTCCCGACAGCGCCACCTACGCAAGCAGTACATGGAGG
ACAAATCCGCGGCAGAAGCCGAGATCGCGAGGCTCAAGGAGGCGCTTGAT
ACGGCATCGAGCGCGGTGGGGGGGTCGTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8180:4287..4967-

>mRNA_L-elsbetiae_contig8180.17177.1 ID=mRNA_L-elsbetiae_contig8180.17177.1|Name=mRNA_L-elsbetiae_contig8180.17177.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig8180:4287..4967- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCTGGAGAGGGGCGACGGAGAAAAGAGTGGAGAGCAGCAGCAGC
GGCGGCGGCGGCGGCGGCGTCAAGGGGAGGAGGGAGAGGAGATCGAGGGA
CAGCGGTAGAAGGAACGGCAAAGACAAGGATGCGGTTCACCACGAGCTCA
AGAAGGAGATGCCGGCTGGAGAGGGGCGACGGAGAAAAGAGTGGAGAGCA
GCAGCAGCGGCGGCGGCGGCGGCGGCGTCAAGGGGAGGAGGGAGAGGAGA
TCGAGGGACAGCGGTAGAAGGAACGGCAAAGACAAGGATGCGGTTCACCA
CGAGCTCAAGAAGGAGCGCCACCTACGCAAGCAGTACATGGAGGACAAAT
CCGCGGCAGAAGCCGAGATCGCGAGGCTCAAGGAGGCGCTTGATACGGCA
TCGAGCGCGGTGGGGGGGTCGTCGGCGCCACCTACGCAAGCAGTACATGG
AGGACAAATCCGCGGCAGAAGCCGAGATCGCGAGGCTCAAGGAGGCGCTT
GATACGGCATCGAGCGCGGTGGGGGGGTCGTCGG
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