mRNA_L-elsbetiae_contig8177.17172.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8177.17172.1
Unique NamemRNA_L-elsbetiae_contig8177.17172.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8177.17172.1 vs. uniprot
Match: A0A6H5K787_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K787_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.890e-27
Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = -3
Query:   34 AAADAKKRATVTAESQERNAALCGHQAKKKKKQKKDIEDATKIAMSTAKEELGLGGLGAVLSGTPSAPTYADAPTSFYDTIEGCETRAKKAEFATKLRDERESLKDKIEKEEAKGARRSDEDLEEMEERLKNVRAWLKKDASA 462
            A+ADA KR     ES+ERN  + GHQ KKKKKQ   IE+  K+AMS  K ELGL      L GT SAPTYADAPTSFYDT EG E +  K E+  KLR E + +K+ I KE+  G+   +EDL+ + +R   VRA +KK+ +A
Sbjct:  384 ASADASKRKVAKVESRERNVGVSGHQ-KKKKKQDAQIENTAKVAMSAVKGELGLD----ALFGTSSAPTYADAPTSFYDTKEGLENKTAKLEYIAKLRKELQEIKEDIRKEKELGSDADEEDLQLLRDRATTVRAQIKKETAA 521          
BLAST of mRNA_L-elsbetiae_contig8177.17172.1 vs. uniprot
Match: A0A6H5JVA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVA9_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.960e-26
Identity = 73/143 (51.05%), Postives = 92/143 (64.34%), Query Frame = -3
Query:   34 AAADAKKRATVTAESQERNAALCGHQAKKKKKQKKDIEDATKIAMSTAKEELGLGGLGAVLSGTPSAPTYADAPTSFYDTIEGCETRAKKAEFATKLRDERESLKDKIEKEEAKGARRSDEDLEEMEERLKNVRAWLKKDASA 462
            A+ADA KR     E +ERN  + GHQ KKKKKQ   IE+  KIAMS  K ELGL      L GT SAPTYADAPTSFYDT EG E +A K E+  KLR E + +K+ I KE+  G+   +EDL+ +++R   V A +KK+ +A
Sbjct:  521 ASADASKRKVAKVEPRERNVGVSGHQ-KKKKKQDAQIENTAKIAMSAVKGELGLD----ALFGTSSAPTYADAPTSFYDTKEGLENKAAKLEYIAKLRKELQEIKEDIRKEKGLGSDADEEDLQLLQDRATTVTAQIKKETAA 658          
BLAST of mRNA_L-elsbetiae_contig8177.17172.1 vs. uniprot
Match: A0A6H5K1S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1S9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 6.600e-25
Identity = 70/143 (48.95%), Postives = 91/143 (63.64%), Query Frame = -3
Query:   34 AAADAKKRATVTAESQERNAALCGHQAKKKKKQKKDIEDATKIAMSTAKEELGLGGLGAVLSGTPSAPTYADAPTSFYDTIEGCETRAKKAEFATKLRDERESLKDKIEKEEAKGARRSDEDLEEMEERLKNVRAWLKKDASA 462
            A+ADA KR     ES+ERN  + GHQ +KKKKQ   IE+  K+AMS  K ELGL      L GT SAPTYADAPTSFYDT EG E +  K E+  KLR E + +K+ I KE+  G+   +EDL+ + +    VRA ++K+ +A
Sbjct:  411 ASADASKRKVAKVESRERNVGVSGHQ-EKKKKQDAQIENTAKVAMSAVKGELGLD----ALFGTSSAPTYADAPTSFYDTKEGLENKTAKLEYIAKLRKELQEIKEDIRKEKELGSDADEEDLQLLRDWATTVRAQIRKETAA 548          
BLAST of mRNA_L-elsbetiae_contig8177.17172.1 vs. uniprot
Match: A0A6H5L890_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L890_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 7.870e-22
Identity = 67/143 (46.85%), Postives = 86/143 (60.14%), Query Frame = -3
Query:   34 AAADAKKRATVTAESQERNAALCGHQAKKKKKQKKDIEDATKIAMSTAKEELGLGGLGAVLSGTPSAPTYADAPTSFYDTIEGCETRAKKAEFATKLRDERESLKDKIEKEEAKGARRSDEDLEEMEERLKNVRAWLKKDASA 462
            A+AD  KR     ES+ERN  + GHQ KKK+KQ   IE+  K+AMS  K ELGL      L GT SAPTYA APTSFYDT EG E +  K E   KLR E + +K  I+KE+  G+   +ED++ + +R    RA + K+  A
Sbjct:  611 ASADTSKRKVAKVESRERNVGVSGHQ-KKKRKQDAQIENTAKVAMSAVKGELGLD----ALFGTSSAPTYAGAPTSFYDTKEGLENKTTKLEHIAKLRKELQEIKKDIKKEKELGSDADEEDVQLLRDRATTFRAQITKETVA 748          
BLAST of mRNA_L-elsbetiae_contig8177.17172.1 vs. uniprot
Match: A0A6H5KX48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX48_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.350e-21
Identity = 64/122 (52.46%), Postives = 77/122 (63.11%), Query Frame = -3
Query:   91 ADAKKRATVTAESQERNAALCGHQAKKKKKQKKDIEDATKIAMSTAKEELGLGGLGAVLSGTPSAPTYADAPTSFYDTIEGCETRAKKAEFATKLRDERESLKDKIEKEEAKGARRSDEDLE 456
            ADA KR     ES+ERN  + G   KKKKKQ   IE+  K+AMS  K ELGL      L GT SAPTYADAPTSFYDT EG E +A K E+  KLR E + +K+ I KE+  G+   +EDL+
Sbjct:  212 ADASKRKVAKVESRERNVGVNGQ--KKKKKQDTQIENTAKVAMSAVKGELGLD----ALVGTSSAPTYADAPTSFYDTKEGLENKAAKLEYIAKLRKELQEIKEDIRKEKELGSDADEEDLQ 327          
BLAST of mRNA_L-elsbetiae_contig8177.17172.1 vs. uniprot
Match: A0A6H5KFT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.610e-21
Identity = 66/143 (46.15%), Postives = 81/143 (56.64%), Query Frame = -3
Query:   34 AAADAKKRATVTAESQERNAALCGHQAKKKKKQKKDIEDATKIAMSTAKEELGLGGLGAVLSGTPSAPTYADAPTSFYDTIEGCETRAKKAEFATKLRDERESLKDKIEKEEAKGARRSDEDLEEMEERLKNVRAWLKKDASA 462
            A+ADA KR     ES+ERN  + GHQ KKKKKQ   IE+  K+AMS  K ELGL      L GT SAPTYADAPTSFYDT EG                    L + I KE+  G+   +EDL+ + +R   VRA +KK+ +A
Sbjct:   30 ASADASKRKVAKVESRERNVGVSGHQ-KKKKKQDAQIENTAKVAMSAVKGELGLD----ALFGTSSAPTYADAPTSFYDTKEG--------------------LXEDIRKEKELGSDADEEDLQLLRDRATTVRAQIKKETAA 147          
BLAST of mRNA_L-elsbetiae_contig8177.17172.1 vs. uniprot
Match: A0A6H5JJ92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ92_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.080e-19
Identity = 66/149 (44.30%), Postives = 92/149 (61.74%), Query Frame = -3
Query:   28 AAAADAKKRATVTAESQERNAALCGHQAKKKKKQKKDIEDATKIAMSTAKEELGLG-GLGAVL--SGTPSAPTYADAPTSFYDTIEGCETRAKKAEFATKLRDERESLKDKIEKEEAKGARRSDEDLEEMEERLKNVRAWLKKDASAPI 465
            AAAADA++R    A ++ER+  L          +K DIE  T++AM+ AK+ LGLG G+G++L  S  PS   + DAPTSF+DTIEGC+T+AKK E ++ LR E + +K  I KE+A G+    EDLE ME     VR  L+K  +  +
Sbjct:  223 AAAADARRRTEAKAGAKERSVDLXXXXXXXXXXEK-DIEHVTRVAMTAAKDTLGLGAGIGSLLDMSSGPSGLKFDDAPTSFFDTIEGCDTKAKKLELSSLLRKELQDIKASIRKEKALGSEADPEDLELMELEANRVRVALRKQLAEAL 370          
BLAST of mRNA_L-elsbetiae_contig8177.17172.1 vs. uniprot
Match: A0A6H5JY80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY80_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.290e-19
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = -3
Query:  115 ESQERNAALCGHQAKKKKKQKKDIEDATKIAMSTAKEELGLGGLGAVLSGTPSAPTYADAPTSFYDTIEGCETRAKKAEFATKLRDERESLKDKIEKEEAKGA 423
            +S ER+A L G Q +KKK   K+IEDA K+  S A EELGLG   A L G PS+P Y+DAPTSFYDTIEGCETR KK E++ +LR     +K+ I KE+A+G+
Sbjct:  329 DSTERDATL-GVQ-EKKKXXXKEIEDAAKVVASAATEELGLGAGLASLLGMPSSPKYSDAPTSFYDTIEGCETRNKKLEYSARLRQTLADIKEDIRKEKARGS 429          
BLAST of mRNA_L-elsbetiae_contig8177.17172.1 vs. uniprot
Match: A0A6H5JRL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.010e-17
Identity = 55/120 (45.83%), Postives = 73/120 (60.83%), Query Frame = -3
Query:   34 GHQAKKKKKQKKDIEDATKIAMSTAKEELGLGGLGAVLSGTPSAPTYADAPTSFYDTIEGCETRAKKAEFATKLRDERESLKDKIEKEEAKGARRSDEDLEEMEERLKNVRAWLKKDASA 393
            G  A   K++   IE+  K+AMS    ELGL      L GT SAPTYADAPTSFYDT EG E +  K E+  KLR E + +K+ I KE+  G+   +EDL+ + +R   VRA +KK+ +A
Sbjct:  386 GASADASKRKDAQIENTAKVAMSAVNGELGLD----ALFGTSSAPTYADAPTSFYDTKEGLENKTAKLEYIAKLRKELQEIKEDIRKEKELGSDADEEDLQLLRDRATTVRAQIKKETAA 501          
BLAST of mRNA_L-elsbetiae_contig8177.17172.1 vs. uniprot
Match: A0A6H5J889_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J889_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 7.380e-17
Identity = 64/144 (44.44%), Postives = 83/144 (57.64%), Query Frame = -3
Query:   31 AAADAKKRATVTAESQERNAALCGHQAKKKKKQKKDIEDATKIAMSTAKEELGLGGLGAVLSGTPSAPTYADAPTSFYDTIEGCETRAKKAEFATKLRDERESLKDKIEKEEAKGARRSDEDLEEMEERLKNVRAWLKKDASAP 462
            AAADA KR     ES+ERNAA+ G   KK+K+Q   I    K AM T    LGLG        T S P Y DAPTS+Y+T +G E++A K +  TKLR E + +K+ I  EEA+G   + EDLE +  +  +VRA L +  S P
Sbjct:  623 AAADAGKRKAAKVESKERNAAVSGRD-KKQKRQADMIASTAKAAMETMLPTLGLG--------TSSGPAYTDAPTSYYETKDGIESKAAKTDLRTKLRKELKEIKEDIRVEEARGNAANKEDLELLRMQHSSVRAQLFELLSTP 757          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8177.17172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5K787_9PHAE4.890e-2751.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVA9_9PHAE1.960e-2651.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1S9_9PHAE6.600e-2548.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L890_9PHAE7.870e-2246.85Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX48_9PHAE3.350e-2152.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFT5_9PHAE8.610e-2146.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ92_9PHAE2.080e-1944.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY80_9PHAE6.290e-1956.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL7_9PHAE1.010e-1745.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J889_9PHAE7.380e-1744.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8177contigL-elsbetiae_contig8177:4766..5232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size468
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816901.6270952-CDS-L-elsbetiae_contig8177:4765..50921622816901.6270952-CDS-L-elsbetiae_contig8177:4765..5092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8177 4766..5092 +
1691683898.8538337-CDS-L-elsbetiae_contig8177:4765..50921691683898.8538337-CDS-L-elsbetiae_contig8177:4765..5092Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8177 4766..5092 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816901.6383858-UTR-L-elsbetiae_contig8177:5092..52321622816901.6383858-UTR-L-elsbetiae_contig8177:5092..5232Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8177 5093..5232 +
1691683898.863224-UTR-L-elsbetiae_contig8177:5092..52321691683898.863224-UTR-L-elsbetiae_contig8177:5092..5232Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8177 5093..5232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8177.17172.1prot_L-elsbetiae_contig8177.17172.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8177 4766..5092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8177.17172.1

>prot_L-elsbetiae_contig8177.17172.1 ID=prot_L-elsbetiae_contig8177.17172.1|Name=mRNA_L-elsbetiae_contig8177.17172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
PAAAASPTSNGCACVLLQPGPHILEPLFHLLQVLIAAARALGFLLLDLVL
EALPFIAEFRGKLGFLRPGLAPLDGVVEGCWGVGVRGGGGRARQHRPKTT
QTQFLLSR*
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mRNA from alignment at L-elsbetiae_contig8177:4766..5232+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8177.17172.1 ID=mRNA_L-elsbetiae_contig8177.17172.1|Name=mRNA_L-elsbetiae_contig8177.17172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=467bp|location=Sequence derived from alignment at L-elsbetiae_contig8177:4766..5232+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGCTGCCGCCGCATCCCCAACTTCAAATGGGTGCGCTTGCGTCCTTCT TCAACCAGGCCCTCACATTCTTGAGCCGCTCTTCCATCTCCTCCAAGTCC TCATCGCTGCGGCGCGCGCCCTTGGCTTCCTCCTTCTCGATCTTGTCCTT GAGGCTCTCCCGTTCATCGCGGAGTTTCGTGGCAAACTCGGCTTTCTTCG CCCTGGTCTCGCACCCCTCGATGGTGTCGTAGAAGGATGTTGGGGCGTCG GCGTACGTGGGGGCGGAGGGCGTGCCCGACAACACCGCCCCAAGACCACC CAGACCCAGTTCCTCCTTAGCCGTTGACATGGCGATCTTCGTGGCATCCT CGATGTCTTTCTTCTGCTTCTTCTTCTTCTTCGCCTGATGGCCGCAGAGA GCGGCGTTCCTCTCCTGCGACTCCGCCGTGACGGTTGCCCTCTTCTTGGC GTCGGCCGCGGCTGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8177:4766..5232+

>mRNA_L-elsbetiae_contig8177.17172.1 ID=mRNA_L-elsbetiae_contig8177.17172.1|Name=mRNA_L-elsbetiae_contig8177.17172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig8177:4766..5232+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGCTGCCGCCGCATCCCCAACTTCAAATGGGTGCGCTTGCGTCCTTCT
TCAACCAGGCCCTCACATTCTTGAGCCGCTCTTCCATCTCCTCCAAGTCC
TCATCGCTGCGGCGCGCGCCCTTGGCTTCCTCCTTCTCGATCTTGTCCTT
GAGGCTCTCCCGTTCATCGCGGAGTTTCGTGGCAAACTCGGCTTTCTTCG
CCCTGGTCTCGCACCCCTCGATGGTGTCGTAGAAGGATGTTGGGGCGTCG
GCGTACGTGGGGGCGGAGGGCGTGCCCGACAACACCGCCCCAAGACCACC
CAGACCCAGTTCCTCCTTAGCCGTTGACCCGCTGCCGCCGCATCCCCAAC
TTCAAATGGGTGCGCTTGCGTCCTTCTTCAACCAGGCCCTCACATTCTTG
AGCCGCTCTTCCATCTCCTCCAAGTCCTCATCGCTGCGGCGCGCGCCCTT
GGCTTCCTCCTTCTCGATCTTGTCCTTGAGGCTCTCCCGTTCATCGCGGA
GTTTCGTGGCAAACTCGGCTTTCTTCGCCCTGGTCTCGCACCCCTCGATG
GTGTCGTAGAAGGATGTTGGGGCGTCGGCGTACGTGGGGGCGGAGGGCGT
GCCCGACAACACCGCCCCAAGACCACCCAGACCCAGTTCCTCCTTAGCCG
TTGA
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