mRNA_L-elsbetiae_contig8177.17171.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8177.17171.1
Unique NamemRNA_L-elsbetiae_contig8177.17171.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8177.17171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8177contigL-elsbetiae_contig8177:2864..3223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size362
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816901.593936-CDS-L-elsbetiae_contig8177:2863..32231622816901.593936-CDS-L-elsbetiae_contig8177:2863..3223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8177 2864..3223 +
1691683898.8446918-CDS-L-elsbetiae_contig8177:2863..32231691683898.8446918-CDS-L-elsbetiae_contig8177:2863..3223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8177 2864..3223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8177.17171.1prot_L-elsbetiae_contig8177.17171.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8177 2864..3223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8177.17171.1

>prot_L-elsbetiae_contig8177.17171.1 ID=prot_L-elsbetiae_contig8177.17171.1|Name=mRNA_L-elsbetiae_contig8177.17171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
ECSYRCKWGYRLVFSFGLDMLVVTVCVVSRMRCSLWCAGREQLFWSVSST
CFFPTPPVCCRVYTVSTDISVSVRVGVLAPVLFYFVLFYWHVPPSLPLAV
CLLLPYTGKLVVRVPILIFR
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mRNA from alignment at L-elsbetiae_contig8177:2864..3223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8177.17171.1 ID=mRNA_L-elsbetiae_contig8177.17171.1|Name=mRNA_L-elsbetiae_contig8177.17171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig8177:2864..3223+ (Laminarionema elsbetiae ELsaHSoW15)
GAATGCAGCTATCGATGTAAATGGGGGTATAGGTTGGTGTTTAGTTTTGG
GTTAGACATGTTGGTGGTTACAGTTTGTGTTGTCTCTCGCATGAGATGTT
CCTTGTGGTGCGCGGGCCGCGAACAATTATTTTGGTCTGTATCCTCAACA
TGTTTTTTTCCCACCCCCCCCGTTTGCTGTCGCGTTTACACTGTCTCTAC
GGATATCTCTGTCTCTGTGCGAGTTGGTGTTCTCGCCCCTGTTCTATTTT
ATTTTGTTTTGTTTTACTGGCACGTACCCCCGTCCCTCCCTCTGGCCGTC
TGCCTGCTGCTCCCTTACACCGGGAAGCTGGTGGTGCGCGTCCCCATCTT
GATATTTCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8177:2864..3223+

>mRNA_L-elsbetiae_contig8177.17171.1 ID=mRNA_L-elsbetiae_contig8177.17171.1|Name=mRNA_L-elsbetiae_contig8177.17171.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig8177:2864..3223+ (Laminarionema elsbetiae ELsaHSoW15)
GAATGCAGCTATCGATGTAAATGGGGGTATAGGTTGGTGTTTAGTTTTGG
GTTAGACATGTTGGTGGTTACAGTTTGTGTTGTCTCTCGCATGAGATGTT
CCTTGTGGTGCGCGGGCCGCGAACAATTATTTTGGTCTGTATCCTCAACA
TGTTTTTTTCCCACCCCCCCCGTTTGCTGTCGCGTTTACACTGTCTCTAC
GGATATCTCTGTCTCTGTGCGAGTTGGTGTTCTCGCCCCTGTTCTATTTT
ATTTTGTTTTGTTTTACTGGCACGTACCCCCGTCCCTCCCTCTGGCCGTC
TGCCTGCTGCTCCCTTACACCGGGAAGCTGGTGGTGCGCGTCCCCATCTT
GATATTTCGTGAATGCAGCTATCGATGTAAATGGGGGTATAGGTTGGTGT
TTAGTTTTGGGTTAGACATGTTGGTGGTTACAGTTTGTGTTGTCTCTCGC
ATGAGATGTTCCTTGTGGTGCGCGGGCCGCGAACAATTATTTTGGTCTGT
ATCCTCAACATGTTTTTTTCCCACCCCCCCCGTTTGCTGTCGCGTTTACA
CTGTCTCTACGGATATCTCTGTCTCTGTGCGAGTTGGTGTTCTCGCCCCT
GTTCTATTTTATTTTGTTTTGTTTTACTGGCACGTACCCCCGTCCCTCCC
TCTGGCCGTCTGCCTGCTGCTCCCTTACACCGGGAAGCTGGTGGTGCGCG
TCCCCATCTTGATATTTCGT
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