mRNA_L-elsbetiae_contig8176.17169.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8176.17169.1
Unique NamemRNA_L-elsbetiae_contig8176.17169.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8176.17169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8176contigL-elsbetiae_contig8176:1514..1906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size395
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816901.3730502-CDS-L-elsbetiae_contig8176:1513..19061622816901.3730502-CDS-L-elsbetiae_contig8176:1513..1906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8176 1514..1906 +
1691683898.7051234-CDS-L-elsbetiae_contig8176:1513..19061691683898.7051234-CDS-L-elsbetiae_contig8176:1513..1906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8176 1514..1906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8176.17169.1prot_L-elsbetiae_contig8176.17169.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8176 1514..1906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8176.17169.1

>prot_L-elsbetiae_contig8176.17169.1 ID=prot_L-elsbetiae_contig8176.17169.1|Name=mRNA_L-elsbetiae_contig8176.17169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
KIKQIGCWCVEATAPAKALAAHRSAQNTGLVPKAGNEAALLYRAPHVFRE
RDEIVCTILPSRRCSRIHIPEGEAREQTNRPIPTCCSARLGSAFNDFKNK
KTPKNVAPASACVLVCVCVCLCVFAGTIDKN
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mRNA from alignment at L-elsbetiae_contig8176:1514..1906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8176.17169.1 ID=mRNA_L-elsbetiae_contig8176.17169.1|Name=mRNA_L-elsbetiae_contig8176.17169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=393bp|location=Sequence derived from alignment at L-elsbetiae_contig8176:1514..1906+ (Laminarionema elsbetiae ELsaHSoW15)
AAGATCAAACAAATCGGGTGCTGGTGTGTGGAAGCTACTGCACCGGCGAA
AGCTCTGGCAGCCCACCGTTCGGCCCAAAATACCGGCCTTGTACCCAAAG
CCGGCAACGAAGCAGCACTATTGTACCGTGCGCCCCACGTATTCCGGGAG
CGCGATGAAATAGTATGTACAATTCTCCCTTCCAGACGTTGCTCAAGGAT
ACACATTCCAGAGGGTGAAGCAAGAGAGCAGACCAATCGTCCGATACCTA
CATGCTGTTCTGCCCGACTTGGAAGCGCTTTCAACGATTTCAAAAACAAA
AAAACGCCGAAAAATGTTGCGCCCGCTTCCGCGTGTGTGCTGGTGTGTGT
GTGTGTTTGTTTGTGTGTGTTCGCCGGAACAATTGACAAAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8176:1514..1906+

>mRNA_L-elsbetiae_contig8176.17169.1 ID=mRNA_L-elsbetiae_contig8176.17169.1|Name=mRNA_L-elsbetiae_contig8176.17169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig8176:1514..1906+ (Laminarionema elsbetiae ELsaHSoW15)
AAGATCAAACAAATCGGGTGCTGGTGTGTGGAAGCTACTGCACCGGCGAA
AGCTCTGGCAGCCCACCGTTCGGCCCAAAATACCGGCCTTGTACCCAAAG
CCGGCAACGAAGCAGCACTATTGTACCGTGCGCCCCACGTATTCCGGGAG
CGCGATGAAATAGTATGTACAATTCTCCCTTCCAGACGTTGCTCAAGGAT
ACACATTCCAGAGGGTGAAGCAAGAGAGCAGACCAATCGTCCGATACCTA
CATGCTGTTCTGCCCGACTTGGAAGCGCTTTCAACGATTTCAAAAACAAA
AAAACGCCGAAAAATGTTGCGCCCGCTTCCGCGTGTGTGCTGGTGTGTGT
GTGTGTTTGTTTGTGTGTGTTCGCCGGAACAATTGACAAAAACAAGATCA
AACAAATCGGGTGCTGGTGTGTGGAAGCTACTGCACCGGCGAAAGCTCTG
GCAGCCCACCGTTCGGCCCAAAATACCGGCCTTGTACCCAAAGCCGGCAA
CGAAGCAGCACTATTGTACCGTGCGCCCCACGTATTCCGGGAGCGCGATG
AAATAGTATGTACAATTCTCCCTTCCAGACGTTGCTCAAGGATACACATT
CCAGAGGGTGAAGCAAGAGAGCAGACCAATCGTCCGATACCTACATGCTG
TTCTGCCCGACTTGGAAGCGCTTTCAACGATTTCAAAAACAAAAAAACGC
CGAAAAATGTTGCGCCCGCTTCCGCGTGTGTGCTGGTGTGTGTGTGTGTT
TGTTTGTGTGTGTTCGCCGGAACAATTGACAAAAAC
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