mRNA_L-elsbetiae_contig8168.17164.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8168.17164.1
Unique NamemRNA_L-elsbetiae_contig8168.17164.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8168.17164.1 vs. uniprot
Match: A0A6H5KY68_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY68_9PHAE)

HSP 1 Score: 527 bits (1357), Expect = 4.570e-184
Identity = 271/300 (90.33%), Postives = 288/300 (96.00%), Query Frame = 1
Query:    1 KNKSLKEMLGPKFLKSDGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYNQLQKAGKPFEVLFVSSDKTQEEFSSYMGDMPWLSVPYDGKTRGTIAQLLGVSALPTLLVFDEDQQLITANGRQEIIKDQKAENFPWYPKALAELSESPEVITQKPAFIVFMEGGDKDEQARIRELVEPMAEARAKMVEDGKVRPAGFLTASEIEPLSTAFRKLVGLDEIQGKFKFMKSKKALLKPRVALLDLMQNQFAVSEDVELTEESLAAFVASWDAGELETKEFNLPTKGEGQEDGVEGAPE 900
            KNKSLKEMLGPKFLK+DGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVY++LQK GKPFE++FVSSDK+++EFS+YMGDMPWLSVP+DGKTRGTIAQLLGVSALPTLLVFDE+QQLITANGRQEIIKD KAENFPWYPKALAEL ESPEVITQKP+FIVFMEGGDKDEQARIRELVEPMAEARAKMVEDGK RPAGFLTASEIEPLSTAFRKLVGLDEIQGK+KFMKSKKALLKPRVALLDLM+NQFAVSE+ +LTEESLAAFVASWDAGEL+TKEFNLP KGE  E   EGA E
Sbjct:  252 KNKSLKEMLGPKFLKADGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYSKLQKDGKPFEIVFVSSDKSEKEFSTYMGDMPWLSVPFDGKTRGTIAQLLGVSALPTLLVFDEEQQLITANGRQEIIKDTKAENFPWYPKALAELVESPEVITQKPSFIVFMEGGDKDEQARIRELVEPMAEARAKMVEDGKARPAGFLTASEIEPLSTAFRKLVGLDEIQGKYKFMKSKKALLKPRVALLDLMRNQFAVSEEGDLTEESLAAFVASWDAGELQTKEFNLPAKGE--EGDAEGAAE 549          
BLAST of mRNA_L-elsbetiae_contig8168.17164.1 vs. uniprot
Match: A0A835Z2Y2_9STRA (Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y2_9STRA)

HSP 1 Score: 293 bits (751), Expect = 1.140e-92
Identity = 151/310 (48.71%), Postives = 213/310 (68.71%), Query Frame = 1
Query:    4 NKSLKEMLGPKFLKSDGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYNQLQKAGKPFEVLFVSSDKTQEEFSSYMGDMPWLSVPYDGKTRGTIAQLLGVSALPTLLVFDEDQQLITANGRQEIIKDQKA----ENFPWYPKALAELSESPEVITQKPAFIVFMEGGDKDEQARIRELVEPMAEARAKM----VEDGKV------RPAGFLTASEIEPLSTAFRKLVGLDEIQGKFKFMKSKKALLKPRVALLDLMQNQFAVSEDVELTEESLAAFVASWDAGELETKEFNLPTKGEGQEDGVEG 891
            NK L+++LGP+F ++DG++V  EAL+GKVL +YFSA WCAPCKQFTP+LK  Y  ++ AGK  E++++ SDK + E  SY G MPWL++PY  K R  + +LLGV  LPTLL+FDE+ +LITANGR ++ KD +      NFPW+PK  A+LS+SPE + + P  ++FM+G  K++QA++  + +P+AE RA      +E G        R A FL A+EI+ LS   RKL GL+EIQGK+KFMKSKK  ++PR  L+ +++ + A+SE+  LTEE+L AF+A +DAG LE + F +      QE G EG
Sbjct:  221 NKGLRDLLGPEFERADGTKVGPEALQGKVLGLYFSADWCAPCKQFTPLLKETYEAVKAAGKELEIVYIGSDKEESEQKSYFGTMPWLAIPYGSKHRAIVPRLLGVQGLPTLLIFDENDKLITANGRMDVTKDVQTGTPGANFPWHPKPFADLSDSPEALARGPVVMLFMDGASKEDQAKLSAIAKPLAEERAAAFSAALEQGGAAVLEAPRKATFLAATEIDQLSATIRKLSGLEEIQGKWKFMKSKKDAMRPRFGLVSIIEGKRAISEET-LTEEALKAFLAEFDAGALELEPFTI------QEGGAEG 523          
BLAST of mRNA_L-elsbetiae_contig8168.17164.1 vs. uniprot
Match: A0A4D9CUC9_9STRA (Thioredoxin domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CUC9_9STRA)

HSP 1 Score: 211 bits (538), Expect = 3.230e-60
Identity = 115/268 (42.91%), Postives = 165/268 (61.57%), Query Frame = 1
Query:    7 KSLKEMLGPKFLKSDGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYNQLQKAGKPFEVLFVSSDKTQEEFSSYMGDMPWLSVPYDGKT-RGTIAQLLGVSALPTLLVFDEDQQLITANGRQEIIKDQKAENFPWYPKALAELSESPEVITQKPAFIVFMEGGDKDEQARIRELVEPMAE---ARAKMVEDGKVRPAGFLTASEIEPLSTAFRKLVGLDEIQGKFKFMKSKKALLKPRVALLDLMQNQFAVS--EDVELTEES 792
            K+L +MLG  FL  D S   AE  + KVLA+YFSA+WC PC++FTP L   Y +++  GK  EV+FVS D+T+E+F  Y   MPWLS+PY+ KT R  +   L V  LPTL++ DE++++IT+ GR  ++KD +   FPWYP+ L E+S S + I QKP+ ++FMEG   D QA++   ++ +AE   A+ K+  +       F  A EI   S A R + GL+++  K KF+KSK    KPR+ LLD+ +    VS  ED    EE+
Sbjct:  324 KTLSQMLGSTFLSKDRSVPAAEVAKKKVLALYFSANWCKPCQEFTPKLVEAYEKVRAQGKDLEVVFVSMDETEEKFKEYFAKMPWLSLPYEDKTARSLLMTELEVKGLPTLVLLDEEREVITSKGRDFVLKDPEGAKFPWYPQPLNEISYSFDGIAQKPSLVLFMEGASADAQAKMVAAMQAVAEEFTAKNKLAPEDAAHRFNFYYAQEISTFSKALRSIAGLEQLNPKDKFLKSKAESNKPRLVLLDIAKEVCHVSPAEDAGTVEET 591          
BLAST of mRNA_L-elsbetiae_contig8168.17164.1 vs. uniprot
Match: S4S061_PETMA (Nucleoredoxin n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4S061_PETMA)

HSP 1 Score: 177 bits (448), Expect = 8.220e-50
Identity = 94/281 (33.45%), Postives = 166/281 (59.07%), Query Frame = 1
Query:    7 KSLKEMLGPKFLKSDGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYNQLQKAGKPFEVLFVSSDKTQEEFSSYMGDMPWLSVPY-DGKTRGTIAQLLGVSALPTLLVFDEDQQLITANGRQEIIKDQKAENFPWYPKALAELSES-PEVITQKPAFIVFMEGGDKDEQARIRELVEPMAE-ARAKMVEDGKVRPAGFLTASEIEPLSTAFRKLVGLDEIQGKFKFMKSKKALLKPRVALLDLMQNQFAVSEDVELTEESLAAFVASWDAGELETK 840
            K   +++    L+S G  V   +LEG  + +YF+A+WC PCK FTP+L  VY +++++GK FE++FVSSD++ E F+ Y G+MPWLSVPY D   R  +++L G+  +P L++ D D+ +IT   R  I+ D++   FPW+P+AL+ LS +  E++ Q+PA ++F++  +++E   +R++++P+AE   A+  + G+ +P  F  A E + ++ + R    L +                P +A+LD+      V +  ELT   ++ FV  +  G+L+ +
Sbjct:   60 KPFSQVIAGPLLRSSGESVDYSSLEGHFIGMYFAANWCPPCKSFTPMLLEVYRRVRESGKKFEIIFVSSDRSDESFAQYFGEMPWLSVPYADTARRLNLSKLYGIQGIPALVMLDVDRSVITPAARVAIMDDREGRLFPWFPRALSMLSAANAEILNQEPALVLFVDSNEEEELEPVRQMLQPIAEQVIAEYKQRGEEQPLHFFYAGE-DDMADSIRDFTALPDCA--------------PLLAILDIPARVKYVKDAEELTGHVISEFVGDYLHGKLQAE 325          
BLAST of mRNA_L-elsbetiae_contig8168.17164.1 vs. uniprot
Match: UPI0014021E3C (nucleoredoxin isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI0014021E3C)

HSP 1 Score: 177 bits (448), Expect = 1.300e-48
Identity = 94/281 (33.45%), Postives = 166/281 (59.07%), Query Frame = 1
Query:    7 KSLKEMLGPKFLKSDGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYNQLQKAGKPFEVLFVSSDKTQEEFSSYMGDMPWLSVPY-DGKTRGTIAQLLGVSALPTLLVFDEDQQLITANGRQEIIKDQKAENFPWYPKALAELSES-PEVITQKPAFIVFMEGGDKDEQARIRELVEPMAE-ARAKMVEDGKVRPAGFLTASEIEPLSTAFRKLVGLDEIQGKFKFMKSKKALLKPRVALLDLMQNQFAVSEDVELTEESLAAFVASWDAGELETK 840
            K   +++    L+S G  V   +LEG  + +YF+A+WC PCK FTP+L  VY +++++GK FE++FVSSD++ E F+ Y G+MPWLSVPY D   R  +++L G+  +P L++ D D+ +IT   R  I+ D++   FPW+P+AL+ LS +  E++ Q+PA ++F++  +++E   +R++++P+AE   A+  + G+ +P  F  A E + ++ + R    L +                P +A+LD+      V +  ELT   ++ FV  +  G+L+ +
Sbjct:  177 KPFSQVIAGPLLRSSGESVDYSSLEGHFIGMYFAANWCPPCKSFTPMLLEVYRRVRESGKKFEIIFVSSDRSDESFAQYFGEMPWLSVPYADTARRLNLSKLYGIQGIPALVMLDVDRSVITPAARVAIMDDREGRLFPWFPRALSMLSAANAEILNQEPALVLFVDSNEEEELEPVRQMLQPIAEQVIAEYKQRGEEQPLHFFYAGE-DDMADSIRDFTALPDCA--------------PLLAILDIPARVKYVKDAEELTGHVISEFVGDYLHGKLQAE 442          
BLAST of mRNA_L-elsbetiae_contig8168.17164.1 vs. uniprot
Match: A0A0G4FAM2_VITBC (Thioredoxin domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FAM2_VITBC)

HSP 1 Score: 175 bits (444), Expect = 4.010e-47
Identity = 92/258 (35.66%), Postives = 150/258 (58.14%), Query Frame = 1
Query:    7 KSLKEMLGPKFLKSDGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYNQLQKAGKPFEVLFVSSDKTQEEFSSYMGD-MPWLSVPY-DGKTRGTIAQLLGVSALPTLLVFDEDQQLITANGRQEIIKDQKAENFPWYPKALAELSESPEVITQKPAFIVFMEGGDKDEQARIRELVEPMAEARAKMVEDGKVRPAGFLTASEIEPLSTAFRKLVGLDEI---QGKFKFMKSKKALLKPRVALLDLMQNQFAVS 765
            K L +++G  F+      V+A  L GKV+ +YFSA+WC PCKQFTP+L   Y + ++ GK FEV+FVS+D+   +F  Y G  MPWL++PY D K R  +   L V++LPTL++ DE++Q+IT  GR  +  D + + FPW PK + +L+E+ E +T  P+ +VFME  +  +Q  +   +E +A+ +  + ++ +V      TA+ + P S A R L  L+ +    GK     +  +   P + +LD+    + V+
Sbjct:  273 KPLSQLVGTDFIDPSNRTVSANQLSGKVVGLYFSANWCPPCKQFTPVLAEAYKRFKEEGKDFEVIFVSNDEDASKFYEYFGSSMPWLAIPYGDSKRRSLLQSELEVASLPTLVLLDENRQIITKQGRALLASDPQGKKFPWRPKPVTDLAENTEKMTDYPSLVVFMEASEPKKQRELESSLEALAKEQEALPKEQQV---AIFTATNVSPRSVALRNLCKLEVVLDRAGKASAADAAASKEAPNMIILDIPDEAYYVA 527          
BLAST of mRNA_L-elsbetiae_contig8168.17164.1 vs. uniprot
Match: A0A2R5GKL2_9STRA (Nucleoredoxin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GKL2_9STRA)

HSP 1 Score: 169 bits (429), Expect = 6.580e-46
Identity = 94/286 (32.87%), Postives = 160/286 (55.94%), Query Frame = 1
Query:   10 SLKEMLGPKFLKSDGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYNQLQKAGKPFEVLFVSSDKTQEEFSSYMGDMPWLSVPYDGK-TRGTIAQLLGVSALPTLLVFDEDQQLITANGRQEIIKDQKAENFPWYPKALAELSESPEVITQKPAFIVFMEGGDKDEQARIRELVEPMAEARAKMVEDGKVRPAGFLTASEIEPLSTAFRKLVGLDEIQGKFKFMKSKKALLK----PRVALLDLMQNQFAVSEDVELTEESLAAFVASWDAGELETKEFNL 852
            SL++ LG +F+ ++G+E T   L+ K + +YFSA WC PC+ FTP    +Y +L+  GKP+EV+FVSSD+  E F  Y  +MPWL++PY+ + ++  ++   G+  +P+ ++ D+D  ++    R  +  D + ++FPW PK +  L++    I + P+ +V ME   +  QA+   +   +AE  A MV++ K  P  FL A   + L+   RKL GLD  + + + + +    +K      V LLD+  N      + ELT+E++A F   + +GEL+     L
Sbjct:  148 SLEDCLGDRFIDAEGNEKTLADLKDKYVTLYFSAHWCPPCRHFTPKFIELYKKLKAEGKPWEVIFVSSDRDAEAFKGYFSEMPWLALPYEDRASKEMLSSHFGIEGIPSAIMLDKDLSVLNKGLRGYVDADPEGKDFPWKPKPVLTLTQGAGDINELPSMVVLMEQESEGTQAQFETIFTQVAETHATMVKEEKKDPMQFLVAPPGDMLADRVRKLCGLDSSKDEVRTLCNGDMCMKLHASTAVILLDIPDNGGYYELEGELTQENIAQFHKRFVSGELKDSRKQL 433          
BLAST of mRNA_L-elsbetiae_contig8168.17164.1 vs. uniprot
Match: UPI000A2A747E (nucleoredoxin n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A747E)

HSP 1 Score: 165 bits (418), Expect = 1.810e-44
Identity = 92/284 (32.39%), Postives = 154/284 (54.23%), Query Frame = 1
Query:    1 KNKSLKEMLGPKFLKSDGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYNQLQKAGKPFEVLFVSSDKTQEEFSSYMGDMPWLSVPY-DGKTRGTIAQLLGVSALPTLLVFDEDQQLITANGRQEIIKDQKAENFPWYPKALAELSESPEVITQKPAFIVFMEGGDKDEQARIRELVEPMAEARAKMVEDGKVR-PAGFLTASEIEPLSTAFRKLVGLDEIQGKFKFMKSKKALLKPRVALLDLMQNQFAVSEDVELTEESLAAFVASWDAGELETKEF 846
            K KS+ E++  KF+   G E+T + L+GKV+ +YFSA WC PC+ FTP+L   YN ++ A K FEV+F+SSD+++E F+ Y+  MPW +VPY D   +  I++  GV  +PTL++ DE+ ++I+ NGR  +  D + + FPW PK L+EL++    I  + A  V+   GD+      +E+++P+A++     E      P  F      E + +      GL E               +  +A+LD+   +  V E   +T E+   F+  + + +LE ++ 
Sbjct:  148 KPKSVFELIQGKFVNGKGEEITTDNLKGKVVGLYFSAHWCPPCRAFTPLLGKTYNAIKAAEKEFEVIFLSSDRSEESFNGYLATMPWYAVPYSDSSRKNAISKHFGVEGIPTLIIMDENWKVISINGRGAVAADPEGKEFPWKPKPLSELNDLTASILNEEACAVYFTDGDEGTLKHAKEILQPLADSYMTQAEQANEDLPIHFFYGGNNEVVDSVL-DFAGLSE---------------ENMLAILDIPSGKVYVCEKDVVTAEAAKQFIDDFLSDKLEGRKI 415          
BLAST of mRNA_L-elsbetiae_contig8168.17164.1 vs. uniprot
Match: L8Y9U0_TUPCH (Nucleoredoxin (Fragment) n=3 Tax=Tupaia chinensis TaxID=246437 RepID=L8Y9U0_TUPCH)

HSP 1 Score: 162 bits (411), Expect = 1.930e-44
Identity = 91/278 (32.73%), Postives = 152/278 (54.68%), Query Frame = 1
Query:    7 KSLKEMLGPKFLKSDGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYNQLQKAGKPFEVLFVSSDKTQEEFSSYMGDMPWLSVPY-DGKTRGTIAQLLGVSALPTLLVFDEDQQLITANGRQEIIKDQKAENFPWYPKALAELSESPEV-ITQKPAFIVFMEGGDKDEQARIRELVEPMAEAR-AKMVEDGKVRPAGFLTASEIEPLSTAFRKLVGLDEIQGKFKFMKSKKALLKPRVALLDLMQNQFAVSEDVELTEESLAAFVASWDAGEL 831
            K  +E++    L+++G  + + +LEG  + VYFSA WC PC+  T +L   Y ++++AG+ FE++FVS+D+++E F  Y  +MPWL+VPY D   R  + +L G+  +PTL+V D   +LIT  GR E++ D+    FPW+PK + ELS+S  V + + P  ++F++  D  E    ++L++P+AE   AK     +  P  F  A E + ++ + R    L E                P + +LD+      V +  E+T   + AFV  + A +L
Sbjct:   49 KPFREVIAGPLLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGELITRQGRVEVLNDEDCREFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGE-DDMTDSLRDYTNLPEAA--------------PLLTILDMSARAKYVMDVEEITPAIVEAFVNDFLAEKL 311          
BLAST of mRNA_L-elsbetiae_contig8168.17164.1 vs. uniprot
Match: A0A6P8HWQ9_ACTTE (Nucleoredoxin n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HWQ9_ACTTE)

HSP 1 Score: 164 bits (416), Expect = 3.410e-44
Identity = 92/273 (33.70%), Postives = 154/273 (56.41%), Query Frame = 1
Query:    7 KSLKEMLGPKFLKSDGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYNQLQKAGKPFEVLFVSSDKTQEEFSSYMGDMPWLSVPYDGKTR-GTIAQLLGVSALPTLLVFDEDQQLITANGRQEIIKDQKAENFPWYPKALAELSE-SPEVITQKPAFIVFMEGGDKDEQARIRELVEPMAEA-RAKMVEDGKVRPAGFLTASEIEPLSTAFRKLVGLDEIQGKFKFMKSKKALLKPRVALLDLMQNQFAVSEDVELTEESLAAFVASW 816
            KS+ E++  K + S G E+T + L+GKV+ +YFSA WC PC+ FTP L   YN ++ A KPFEV+F+SSD+  E F SY+  MPW +VPYD   R   +++  GV  +PTL++ DE+ ++IT NGR  I  D + + FPW  K L EL++ +  ++ ++P  I F +G ++      +E+++P+AE+  A+  E  +  P  F  A   E + +     VG+ E               +  +A++D+   +  V E+  +T ++   F++ +
Sbjct:  148 KSVSELMKGKLVNSKGEEITVDDLKGKVVGLYFSAHWCPPCRAFTPQLAKTYNAIKAANKPFEVIFLSSDRADESFQSYLDTMPWYAVPYDDSMRKNNVSKHFGVEGIPTLIIMDENWKVITTNGRGAIAADPEGKEFPWKIKPLCELNDLTASLLNEEPCAIYFTDG-EEPTLKHAKEILQPLAESYAAEAKEKNEDLPIQFFFAGNNEVVESLL-DFVGISE---------------ENMLAIVDIPNGKLFVCENDVVTADAAKQFISDY 403          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8168.17164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY68_9PHAE4.570e-18490.33Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A835Z2Y2_9STRA1.140e-9248.71Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A4D9CUC9_9STRA3.230e-6042.91Thioredoxin domain-containing protein n=2 Tax=Mono... [more]
S4S061_PETMA8.220e-5033.45Nucleoredoxin n=1 Tax=Petromyzon marinus TaxID=775... [more]
UPI0014021E3C1.300e-4833.45nucleoredoxin isoform X1 n=2 Tax=Petromyzon marinu... [more]
A0A0G4FAM2_VITBC4.010e-4735.66Thioredoxin domain-containing protein n=2 Tax=Vitr... [more]
A0A2R5GKL2_9STRA6.580e-4632.87Nucleoredoxin n=1 Tax=Hondaea fermentalgiana TaxID... [more]
UPI000A2A747E1.810e-4432.39nucleoredoxin n=1 Tax=Exaiptasia diaphana TaxID=26... [more]
L8Y9U0_TUPCH1.930e-4432.73Nucleoredoxin (Fragment) n=3 Tax=Tupaia chinensis ... [more]
A0A6P8HWQ9_ACTTE3.410e-4433.70Nucleoredoxin n=1 Tax=Actinia tenebrosa TaxID=6105... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8168contigL-elsbetiae_contig8168:447..5298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score525.4
Seed ortholog evalue1.7e-146
Seed eggNOG ortholog2880.D8LJ01
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular oxidant detoxification
EggNOG OGsKOG2501@1,KOG2501@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size903
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8168.17164.1prot_L-elsbetiae_contig8168.17164.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8168 468..5298 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.960369-UTR-L-elsbetiae_contig8168:446..4671622816900.960369-UTR-L-elsbetiae_contig8168:446..467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8168 447..467 +
1691683898.366966-UTR-L-elsbetiae_contig8168:446..4671691683898.366966-UTR-L-elsbetiae_contig8168:446..467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8168 447..467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.970797-CDS-L-elsbetiae_contig8168:467..4911622816900.970797-CDS-L-elsbetiae_contig8168:467..491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 468..491 +
1691683898.3785708-CDS-L-elsbetiae_contig8168:467..4911691683898.3785708-CDS-L-elsbetiae_contig8168:467..491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 468..491 +
1622816900.9813662-CDS-L-elsbetiae_contig8168:770..9061622816900.9813662-CDS-L-elsbetiae_contig8168:770..906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 771..906 +
1691683898.3949444-CDS-L-elsbetiae_contig8168:770..9061691683898.3949444-CDS-L-elsbetiae_contig8168:770..906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 771..906 +
1622816900.993287-CDS-L-elsbetiae_contig8168:1770..18281622816900.993287-CDS-L-elsbetiae_contig8168:1770..1828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 1771..1828 +
1691683898.4081345-CDS-L-elsbetiae_contig8168:1770..18281691683898.4081345-CDS-L-elsbetiae_contig8168:1770..1828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 1771..1828 +
1622816901.0037608-CDS-L-elsbetiae_contig8168:2073..22661622816901.0037608-CDS-L-elsbetiae_contig8168:2073..2266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 2074..2266 +
1691683898.4203105-CDS-L-elsbetiae_contig8168:2073..22661691683898.4203105-CDS-L-elsbetiae_contig8168:2073..2266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 2074..2266 +
1622816901.01513-CDS-L-elsbetiae_contig8168:2837..29271622816901.01513-CDS-L-elsbetiae_contig8168:2837..2927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 2838..2927 +
1691683898.4305696-CDS-L-elsbetiae_contig8168:2837..29271691683898.4305696-CDS-L-elsbetiae_contig8168:2837..2927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 2838..2927 +
1622816901.0295382-CDS-L-elsbetiae_contig8168:4374..46181622816901.0295382-CDS-L-elsbetiae_contig8168:4374..4618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 4375..4618 +
1691683898.441095-CDS-L-elsbetiae_contig8168:4374..46181691683898.441095-CDS-L-elsbetiae_contig8168:4374..4618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 4375..4618 +
1622816901.0399168-CDS-L-elsbetiae_contig8168:5161..52981622816901.0399168-CDS-L-elsbetiae_contig8168:5161..5298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 5162..5298 +
1691683898.4509041-CDS-L-elsbetiae_contig8168:5161..52981691683898.4509041-CDS-L-elsbetiae_contig8168:5161..5298Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8168 5162..5298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8168.17164.1

>prot_L-elsbetiae_contig8168.17164.1 ID=prot_L-elsbetiae_contig8168.17164.1|Name=mRNA_L-elsbetiae_contig8168.17164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=294bp
MLGPKFLKSDGSEVTAEALEGKVLAVYFSASWCAPCKQFTPILKSVYNQL
QKAGKPFEVLFVSSDKTQEEFSSYMGDMPWLSVPYDGKTRGTIAQLLGVS
ALPTLLVFDEDQQLITANGRQEIIKDQKAENFPWYPKALAELSESPEVIT
QKPAFIVFMEGGDKDEQARIRELVEPMAEARAKMVEDGKVRPAGFLTASE
IEPLSTAFRKLVGLDEIQGKFKFMKSKKALLKPRVALLDLMQNQFAVSED
VELTEESLAAFVASWDAGELETKEFNLPTKGEGQEDGVEGAPE*
back to top

mRNA from alignment at L-elsbetiae_contig8168:447..5298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8168.17164.1 ID=mRNA_L-elsbetiae_contig8168.17164.1|Name=mRNA_L-elsbetiae_contig8168.17164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4852bp|location=Sequence derived from alignment at L-elsbetiae_contig8168:447..5298+ (Laminarionema elsbetiae ELsaHSoW15)
AAGAACAAGTCGCTCAAGGAGATGCTGGGGCCCAAGTTCCTCAAGGTGAG TTAAGCTTGACAGCTTGATTTATCTCGGGGAAAAGTGCGCACACGTGTAA AACCTTTCTCAACCTCTGCTGGTTTTGTTTTCCCAAACGGATTGTTATCC GAATGTATATAACACCTACCTTCTTTTTACTCTCGATGTAAGAATGTATG GACATTAAACCGAACGTTATTTTTTTCTCACATGTTTTTTCTCGGGAGAT ACGTTCTGTATATTGTTCCTTTTTTTTATACGTGTTCATACTCTCCCCGT TTTCTCTCGCTTTTTCTGGTGCAGTCTGATGGATCCGAGGTGACCGCGGA GGCTCTGGAGGGGAAGGTGCTGGCTGTCTATTTCAGCGCCAGCTGGTGCG CCCCCTGCAAGCAGTTCACGCCGATCCTCAAGAGTGTCTACAACCAGCTC CAGAAAGCCGGTGAGAAAAAACACACCACTCTTCAGCTGTTTATGTATCA TGCTTTTGTCTTAACACAGAGGTTTACTCGGCGATGTTTGTTTGTCGCCT GAGTAGCTCCGTCCCAATGTTCCTCAAACAAAACGGAAAAACGATTTGTG AACTCGAGGCTTGCGCTGTTCCCCGCCGGTGCAATCGATTGTTACATTTT TTTTTCGTATCTACATGTATGTATCTTACGGTCCGCGGTTTGCCCTCCTC ATCTGGAAGAGAGCCTTTTCGAAAAGATAAGATGAGCTGTGTATTTAGGT GCATTTTTAAAAATGCAGATCCCAACCTCGTTACAGAGAGTATGACGTTA CAGAGTATGAAGGTTACTTCCAACCTGCGGGTGCGATAGTTAAGAGAAGT GACTACAAGAGAGTCAAGCTGCCGGTTTTCTTCAATTCACCAGCATGGGG CAGACTCGACCCTCTTCATCTATCTGCCCGTGTGGTCTCGCGATGTTCCG TAGTTACCGTCAGAGGGAGGCGGAGCTTTCTCTGCCGAACTTCTGAAGGA GAAGTTGACTGCCTGTTTGCGGTGGCTGTTGTCGTTGTCGGCGGCGGTGC GGGGTGCCGGTGTTGGTGTTGGTGCCGGCGGTTGTGCTGGTGTATGGCCG TGCTCGTGGCACAGCGCTTTGGCGGGCCGTGTATGTACAAGCCCGATACG TTTGTGTTCTGGCGGATAGATTAGCCCCCGAAATGCATCTGTCTCGTCTC AAGAGTTTATTGACTTTGCCCTTCCTTTGCGTCCTTTGGCGCTCTGGTCC CGTGCGATGTGCCTGCCTGCCTGCCTGTCTGCCTGCCATGCTGCGTCGAA ATCTTCTTGGCGCCGCGCTCGCAGGAAAACCGTTCGAGGTCTTGTTCGTG TCCAGCGACAAGACTCAGGAAGAGTTCAGCAGGTGGGAGAACTAGGACCA GAAAAGGAGAGGGCATGCAGATAGATAAAAGAGGAACCACGCGGAGGCAG GAAAAAGCTAACGGGGGTTTGATCGTGAAACTTGGCTGGCAAAGAGATGG CACATGAGTCCGAGAGAGATGTGACACAGATTCATCCCCATCTTTTGCTG CTCGTCCCATCCTCCAAGACTCTCGTACTAAACCCTCGCTCGTTCTGTTT TCGTGCCCCTCTCTTCTCTGGTGGCAGCTACATGGGGGACATGCCGTGGC TGTCCGTGCCGTACGACGGCAAGACTCGCGGCACCATCGCGCAGCTCCTG GGGGTGTCGGCCCTCCCGACCCTCCTGGTCTTCGACGAGGACCAGCAGCT CATCACCGCGAACGGGCGGCAGGAGATCATCAAGGACCAGAAGGCGGAAA ACTTCCCGTGGTACCCCAAGGTGTGTGTGGCACGGATGTGGTGTGCCGCT GGGTTGCTGAAAGGTGTTGCGGTTTTTGTTTTGGTTCGTGGTCCGTGGCG GCGGCGGCGGCGGCGGCGGCAGACCTGCGGATTGATGGATGTCGGTGGTT GGCGGGTGTTGTTTGATCCTCCCCTGTCGAACGTATTTAGTGGTGTTTTG ACGAGGTTTTGGGGGCTGAACACATTTTTTTTATGTGTTGTATATTCAGG GTATCGTATGTATGGACTACCCGCACGTGACGTACTCACGCACTTGACGT ACTATATAGTGCTGACTTGCTGGAGTACAAACTAACTTTTTCCCCACCGG ATGTGTCGCGCAACTTAAGTTGTAGAGCACGCGCTTTTTATTCTGTTGCA TGTTTGTACGAACACCAGCCCTTGTTTGGTTGCTGATTTCAAGGTGATAT TCATACATATCTAGCTCCCTTCTCTTGTGTTTGGGTAAACTGCGTGCGCG AAAATCATCTGGCGCCAAGCAGCTGCTGTGTGGCCTGCTGACTATCCACC GCCCCCGCCGCCTCGGCTGTGTGTGTGTCGCTTCTTGACAGGCGTTGGCT GAGCTATCGGAGTCTCCGGAAGTGATCACCCAAAAGCCGGCGTTCATCGT TTTCATGGAGGGAGGGGACAAAGACGAGCAGGTGAGGAGGACAGTTTCGT GTATTGCCGTAGTGAACAGACGCGCCCATCGTCGTTTTATTTTGGCGAAT GGCAACGCTTGTTCTGTCGCGTGCGGAGTTGGATGGAATGCAAAGTTTTT TTTTACATGTGCTACAATTCCCAAAGGAATCTCGCTAATTCGCTAATAAT TAGTGCCGAGAGAGACGCACAGCGAAGACGTTCGAAAACCAGACACTCGA AAGCGACAAAAAAAAATACAAAAAAAAGTACAAAAGAACAGCTCCCACGC GGATTTGAACCACGGACCTTATGCTTACTAAGCACACGCTCTACGGCATC CCATAGCTCAGTGGTCGTTCCTACGCCTTTTTCACGAACACTACATTTTA CAGTACCATGGTTCCATGGTTTTTCCATGGCTCCGTACAACAAATATTGT GGGTATGCGGTTATTGCCATATACTCCTACATTTTTGAGGGTTACAGGCT ACAGGCTACACTATGGACATGGCAAAGAGCGCAGAGCGTATTGCCGTCGC CCATAGGTCTAGGGCGGCCGGGTGTGACTTGCACATGGTCCCTACGTGAA AATATAGTATCTGATTTCACATTAGCGTCATGTGACGACTGCCAGAACCT GCCCCTCGTCACGTATGTATGTCGTATTGTGCTCACTACGCCCCGGGTAC ATATTTTTGTGTATCTAAACTATTTGGTAACTTCTTTGTAAACGCTTTTC TCGCGTGCCTCCGCAGCAGTCAATTTCGACTGTTCCTGATGCCGTGTTTG TGGTCTAACCCGTGGCTAAAATGGCGTTTCGTGTAACACGAGCAGGCGTT GCCGGGGCAGCTGTGCAGCCGTGTCGATGTCTTTGGTGTGCATGATGGGT TATTTAGTTGCCGGTGGCGAGAGGGACGCAAAGATCCACACGGGATATTG CCGCCCTCCGGATCTGCCTTTTCTCTACTTCCCCTCCAAACGTTTTCCTC ACAAGACCGTCGTTTACCTAAAAACATACACAGCTTGTATTTTAATATCT CTTTTGTTTTCCTCGCTTTGGAGCGCTGGACTCGCCCCCACCCCATGTTG GCCATCACCTTCCGTCTTTTTCCACGGCATGTCTACCCATCTAGTCGGTA CATAGGAACCAAAACCGTTTTTCCTGCCGAACCACCTCGTGTGCTCGTCC TCCCTACAGTAGTATTATACATTTCCAGCCGTCTTTTTCGGGTCTTTGGG CCCTGTAGACCCCCTCTTGCCAGCAACCTGGCTCTGACCACTCCTACCCT TCCCCGCCCGCCAAATAGGCCACCAATGTGTTTGACGGGTGGGTGTTCAA GCGCCCACGCCTACAGCACCTAACGAACAGGCAGAAATGTGTCGTGAAAA TGAACGCTTTGGTACCCCCTCTACCGTAGCATCTCTCGTTGACGCTAATA TGTATTTGTATGCATGTTTGTACCACAGGCACGAATCCGCGAACTCGTGG AACCGATGGCAGAGGCGAGGGCGAAGATGGTGGAGGACGGCAAGGTGAGG CCGGCCGGGTTCTTGACGGCGTCCGAGATCGAGCCGCTGTCCACGGCGTT CCGAAAGCTGGTGGGGCTTGACGAAATCCAGGGGAAGTTCAAGTTCATGA AGAGCAAGAAGGCCCTGCTCAAGCCGCGCGTGGCCTTGTTGGATCTCATG CAGAACCAGTTCGCTGTCAGCGGTGAGTTTTTTTGTTTTTTTCTCGTTTT GTCAGTGCTATTTCACTGACTACTGTGCTTGGTGTATCTACTCTTTTGCG TTTTTTTTTTGTCCCTGGTTTGCTTGTGGGCCGCTGTTGAGTGGGGTGGA CAGGCGTGCCGGCTTAGAGGGTAGAGGAACGGTGTGGTACCTACATCGGT GGGGCCGCGTTCGCGAAGAATTCCTGATCTGTGGCAAATAATAGACGGGG GTTCCGCAACCCTAACCCCAAACCACCCCCAATTAGTCGTTTCCGTACTT TTATCCCATATAATTTCTTCCAGAAAAACCTGCGAAGGCCACTGCATCGG TGACTGGGTATCAAAACTGTTTTTCGTGAGTGAAAAAAGAGATCAGCGTG CGTGTTGTGTCAGTCCTTGCTTGGGCCGAAGGCTCGCTCGTCACCGGATC TGTTTTTCTCTATTGCCGCCGTTTCACGCCATCTGAGCTGATGTCCCTGG TCCTGGTCTGCCTGCTGCTGGTGTTGTTTGTTCATCTCGTGCTTTCCAAA CACCGACACCAACAGAGGATGTCGAGTTGACAGAGGAAAGCCTGGCCGCT TTCGTGGCCTCTTGGGATGCGGGGGAGCTCGAGACCAAGGAGTTTAACTT GCCCACCAAGGGTGAAGGACAGGAGGATGGCGTGGAAGGCGCACCAGAGT AA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8168:447..5298+

>mRNA_L-elsbetiae_contig8168.17164.1 ID=mRNA_L-elsbetiae_contig8168.17164.1|Name=mRNA_L-elsbetiae_contig8168.17164.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1764bp|location=Sequence derived from alignment at L-elsbetiae_contig8168:447..5298+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGGGCCCAAGTTCCTCAAGATGCTGGGGCCCAAGTTCCTCAAGTC
TGATGGATCCGAGGTGACCGCGGAGGCTCTGGAGGGGAAGGTGCTGGCTG
TCTATTTCAGCGCCAGCTGGTGCGCCCCCTGCAAGCAGTTCACGCCGATC
CTCAAGAGTGTCTACAACCAGCTCCAGAAAGCCGTCTGATGGATCCGAGG
TGACCGCGGAGGCTCTGGAGGGGAAGGTGCTGGCTGTCTATTTCAGCGCC
AGCTGGTGCGCCCCCTGCAAGCAGTTCACGCCGATCCTCAAGAGTGTCTA
CAACCAGCTCCAGAAAGCCGGAAAACCGTTCGAGGTCTTGTTCGTGTCCA
GCGACAAGACTCAGGAAGAGTTCAGCAGGAAAACCGTTCGAGGTCTTGTT
CGTGTCCAGCGACAAGACTCAGGAAGAGTTCAGCAGCTACATGGGGGACA
TGCCGTGGCTGTCCGTGCCGTACGACGGCAAGACTCGCGGCACCATCGCG
CAGCTCCTGGGGGTGTCGGCCCTCCCGACCCTCCTGGTCTTCGACGAGGA
CCAGCAGCTCATCACCGCGAACGGGCGGCAGGAGATCATCAAGGACCAGA
AGGCGGAAAACTTCCCGTGGTACCCCAAGCTACATGGGGGACATGCCGTG
GCTGTCCGTGCCGTACGACGGCAAGACTCGCGGCACCATCGCGCAGCTCC
TGGGGGTGTCGGCCCTCCCGACCCTCCTGGTCTTCGACGAGGACCAGCAG
CTCATCACCGCGAACGGGCGGCAGGAGATCATCAAGGACCAGAAGGCGGA
AAACTTCCCGTGGTACCCCAAGGCGTTGGCTGAGCTATCGGAGTCTCCGG
AAGTGATCACCCAAAAGCCGGCGTTCATCGTTTTCATGGAGGGAGGGGAC
AAAGACGAGCAGGCGTTGGCTGAGCTATCGGAGTCTCCGGAAGTGATCAC
CCAAAAGCCGGCGTTCATCGTTTTCATGGAGGGAGGGGACAAAGACGAGC
AGGCACGAATCCGCGAACTCGTGGAACCGATGGCAGAGGCGAGGGCGAAG
ATGGTGGAGGACGGCAAGGTGAGGCCGGCCGGGTTCTTGACGGCGTCCGA
GATCGAGCCGCTGTCCACGGCGTTCCGAAAGCTGGTGGGGCTTGACGAAA
TCCAGGGGAAGTTCAAGTTCATGAAGAGCAAGAAGGCCCTGCTCAAGCCG
CGCGTGGCCTTGTTGGATCTCATGCAGAACCAGTTCGCTGTCAGCGGCAC
GAATCCGCGAACTCGTGGAACCGATGGCAGAGGCGAGGGCGAAGATGGTG
GAGGACGGCAAGGTGAGGCCGGCCGGGTTCTTGACGGCGTCCGAGATCGA
GCCGCTGTCCACGGCGTTCCGAAAGCTGGTGGGGCTTGACGAAATCCAGG
GGAAGTTCAAGTTCATGAAGAGCAAGAAGGCCCTGCTCAAGCCGCGCGTG
GCCTTGTTGGATCTCATGCAGAACCAGTTCGCTGTCAGCGAGGATGTCGA
GTTGACAGAGGAAAGCCTGGCCGCTTTCGTGGCCTCTTGGGATGCGGGGG
AGCTCGAGACCAAGGAGTTTAACTTGCCCACCAAGGGTGAAGGACAGGAG
GATGGCGTGGAAGGCGCACCAGAGTAAAGGATGTCGAGTTGACAGAGGAA
AGCCTGGCCGCTTTCGTGGCCTCTTGGGATGCGGGGGAGCTCGAGACCAA
GGAGTTTAACTTGCCCACCAAGGGTGAAGGACAGGAGGATGGCGTGGAAG
GCGCACCAGAGTAA
back to top