mRNA_L-elsbetiae_contig8164.17161.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8164.17161.1
Unique NamemRNA_L-elsbetiae_contig8164.17161.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8164.17161.1 vs. uniprot
Match: A0A6H5K995_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K995_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.520e-24
Identity = 63/123 (51.22%), Postives = 75/123 (60.98%), Query Frame = 1 
Query:  502 RWGFVAVVAAISAGGAGLVEASTSVDLGDLYPGCRGVLEHIGDGYCDRYGDDTNNVEECGFDGGDCCICTCVSTDYPCPDDARAYRC-----NDTSAECFGDPIPTPSPAS----GETEVTAD 843
            RW  VA+VA  +  G      STSVDL DLYP C G L+HIGDGYCD   D TNN+EECGFDGGDCC C CV       +D  AY C     +DTS+ C+  P PTP+P +    G+T  TA+
Sbjct:   11 RWAVVALVALSAGCGRVATATSTSVDLIDLYPDCEGELDHIGDGYCD---DATNNLEECGFDGGDCCECDCV-VPADASEDQLAYSCVQFSCDDTSSACYVVPAPTPTPVAASDDGDTVETAE 129
[Close]
BLAST of mRNA_L-elsbetiae_contig8164.17161.1 vs. uniprot
Match: D7G9A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A3_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.780e-17
Identity = 49/96 (51.04%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:  586 DLYPGCRGVLEHIGDGYCDRYGDDTNNVEECGFDGGDCCICTCVSTDYPCPDDARAYRC-----NDTSAECFGDPIPTPSPAS----GETEVTADD 846
            DLYP C G L+ IGDGYCD   D TNN+EECGFDGGDCC C CV       +D  AY C     +DTS+ C+  P PTP+P +    G+T  TA++
Sbjct:    3 DLYPDCEGELDLIGDGYCD---DATNNLEECGFDGGDCCECDCVIP-ADASEDQLAYSCVQFSCDDTSSACYVVPAPTPTPVAASDDGDTVETAEN 94
[Close]
BLAST of mRNA_L-elsbetiae_contig8164.17161.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.510e-10
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  586 DLYPGCRGVLEHIGDGYCDRYGDDTNNVEECGFDGGDCCICTCVST---DYPCPDDARAYRCNDTSAECFGD 792
            D+   C G +  IG+G+CDR     NN EECG+DGGDCC CTC S    DY C  +   + C D +A CFG+
Sbjct:   21 DMVENC-GYVSGIGNGWCDR----NNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPTASCFGE 87
[Close]
BLAST of mRNA_L-elsbetiae_contig8164.17161.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.580e-10
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:  586 DLYPGCRGVLEHIGDGYCDRYGDDTNNVEECGFDGGDCCICTCVST---DYPCPDDARAYRCNDTSAECFGD 792
            D++  C G +  IG+G+CDR     NN EECG+DGGDCC CTC S    DY C  +  ++ C D +A CFG+
Sbjct:  162 DMFENC-GYVSGIGNGWCDR----NNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGE 228
[Close]
BLAST of mRNA_L-elsbetiae_contig8164.17161.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 8.600e-10
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:  586 DLYPGCRGVLEHIGDGYCDRYGDDTNNVEECGFDGGDCCICTCVST---DYPCPDDARAYRCNDTSAECFGD 792
            D++  C G +  IGDG+CD      NN E CG+DGGDCC CTC S    DY C +DA  + C D SA CFG+
Sbjct:   50 DMFDNC-GYVSGIGDGWCDS----NNNKEACGYDGGDCCSCTCESVWDDDYTCGEDAF-FDCKDPSAACFGE 115
[Close]
BLAST of mRNA_L-elsbetiae_contig8164.17161.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.840e-10
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:  586 DLYPGCRGVLEHIGDGYCDRYGDDTNNVEECGFDGGDCCICTCVST---DYPCPDDARAYRCNDTSAECFGD 792
            D++  C G +  IG+G+CDR     NN EECG+DGGDCC CTC S    DY C  +  ++ C D +A CFG+
Sbjct:  524 DMFENC-GYVSGIGNGWCDR----NNNKEECGYDGGDCCSCTCQSPYDDDYLCSSEYGSFDCQDPNASCFGE 590
[Close]
BLAST of mRNA_L-elsbetiae_contig8164.17161.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.050e-9
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:  586 DLYPGCRGVLEHIGDGYCDRYGDDTNNVEECGFDGGDCCICTCVST---DYPCPDDARAYRCNDTSAECFGD 792
            D+   C G +  IG+G+CDR     NN EECG+DGGDCC CTC S    DY C  +  ++ C D +A CFG+
Sbjct:  262 DMVENC-GYVSGIGNGWCDR----NNNKEECGYDGGDCCSCTCESPYDDDYSCSSEYGSFDCKDPNASCFGE 328
[Close]
BLAST of mRNA_L-elsbetiae_contig8164.17161.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.070e-9
Identity = 35/72 (48.61%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  586 DLYPGCRGVLEHIGDGYCDRYGDDTNNVEECGFDGGDCCICTCVST---DYPCPDDARAYRCNDTSAECFGD 792
            D+   C G +  IG+G+CDR     NN EECG+DGGDCC CTC S    DY C  +   + C D SA CFG+
Sbjct:  482 DMVENC-GYVSGIGNGWCDR----NNNKEECGYDGGDCCSCTCQSAYDDDYSCSSEYGYFDCQDPSASCFGE 548
[Close]
BLAST of mRNA_L-elsbetiae_contig8164.17161.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.940e-9
Identity = 55/158 (34.81%), Postives = 70/158 (44.30%), Query Frame = 1 
Query:  481 MLRRLGKRWGFVAVVAAISAGGAGLVEASTSVDLGDLYPGCRGVLEHIGDGYCDRYGDDTNNVEECGFDGGDCCICTCVST-DYPCPDDARAYRCNDTSA--ECFGDPIPTPSPASGETEVTADDSSASLSGIASSTAAAAGALVATVLCGGFVVAVG 945
            +LRR     G  A   +      G   A T+     LYP C   +  +GD  CD       NV ECGFDGGDCC CTCV T D  C +    Y C D  A  +C   P PTP+  S  T   A D +A  + + +S     G       CGG++  +G
Sbjct:   27 LLRRSAWEGGVAAQEDSDDGNDGGSTSAPTA-----LYPDCEADMALVGDSLCDF----DVNVAECGFDGGDCCECTCVDTGDQVCGEGGTGYFCVDPDAPQDCASSPSPTPNTPSSPTSSDAIDVTAGPTSLDASDDPYPG-------CGGYIPHIG 168
[Close]
BLAST of mRNA_L-elsbetiae_contig8164.17161.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.640e-9
Identity = 36/71 (50.70%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:  568 TSVDLGD-LYPGCRGVLEHIGDGYCDRYGDDTNNVEECGFDGGDCCICTC---VSTDYPCPDDARAYRCND 768
            TS+D  D  YPGC G + HIGDGYCD      NN   CGFDGGDCC CTC      D+ C      Y C D
Sbjct:  150 TSLDASDDPYPGCGGYIPHIGDGYCDE----DNNTAACGFDGGDCCACTCGMDAEVDHECGLLNDGYDCRD 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8164.17161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5K995_9PHAE1.520e-2451.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9A3_ECTSI2.780e-1751.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI88_ECTSI4.510e-1047.22Similar to Pappalysin-2 (Pregnancy-associated plas... [more]
A0A6H5KB04_9PHAE6.580e-1047.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0S3_ECTSI8.600e-1050.00LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JXR2_9PHAE8.840e-1047.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F4_ECTSI1.050e-947.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE1.070e-948.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX76_ECTSI1.940e-934.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVP4_9PHAE2.640e-950.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8164contigL-elsbetiae_contig8164:2256..8733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1e-09
Seed eggNOG ortholog2880.D7FX76
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionNotch domain
Ec32 orthologEc-03_004250.1
Exons3
Model size1550
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8164.17161.1prot_L-elsbetiae_contig8164.17161.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8164 2855..5181 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.7771218-UTR-L-elsbetiae_contig8164:2255..28541622816900.7771218-UTR-L-elsbetiae_contig8164:2255..2854Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8164 2256..2854 -
1691683898.2423816-UTR-L-elsbetiae_contig8164:2255..28541691683898.2423816-UTR-L-elsbetiae_contig8164:2255..2854Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8164 2256..2854 -
1622816900.8140295-UTR-L-elsbetiae_contig8164:5181..52011622816900.8140295-UTR-L-elsbetiae_contig8164:5181..5201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8164 5182..5201 -
1691683898.2765286-UTR-L-elsbetiae_contig8164:5181..52011691683898.2765286-UTR-L-elsbetiae_contig8164:5181..5201Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8164 5182..5201 -
1622816900.8237305-UTR-L-elsbetiae_contig8164:8273..87331622816900.8237305-UTR-L-elsbetiae_contig8164:8273..8733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8164 8274..8733 -
1691683898.2851002-UTR-L-elsbetiae_contig8164:8273..87331691683898.2851002-UTR-L-elsbetiae_contig8164:8273..8733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8164 8274..8733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.7903244-CDS-L-elsbetiae_contig8164:2854..31801622816900.7903244-CDS-L-elsbetiae_contig8164:2854..3180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8164 2855..3180 -
1691683898.2529151-CDS-L-elsbetiae_contig8164:2854..31801691683898.2529151-CDS-L-elsbetiae_contig8164:2854..3180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8164 2855..3180 -
1622816900.8025863-CDS-L-elsbetiae_contig8164:5036..51811622816900.8025863-CDS-L-elsbetiae_contig8164:5036..5181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8164 5037..5181 -
1691683898.2656794-CDS-L-elsbetiae_contig8164:5036..51811691683898.2656794-CDS-L-elsbetiae_contig8164:5036..5181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8164 5037..5181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8164.17161.1

>prot_L-elsbetiae_contig8164.17161.1 ID=prot_L-elsbetiae_contig8164.17161.1|Name=mRNA_L-elsbetiae_contig8164.17161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
MLRRLGKRWGFVAVVAAISAGGAGLVEASTSVDLGDLYPGCRGVLEHIGD
GYCDRYGDDTNNVEECGFDGGDCCICTCVSTDYPCPDDARAYRCNDTSAE
CFGDPIPTPSPASGETEVTADDSSASLSGIASSTAAAAGALVATVLCGGF
VVAVGW*
back to top

mRNA from alignment at L-elsbetiae_contig8164:2256..8733-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8164.17161.1 ID=mRNA_L-elsbetiae_contig8164.17161.1|Name=mRNA_L-elsbetiae_contig8164.17161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6478bp|location=Sequence derived from alignment at L-elsbetiae_contig8164:2256..8733- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGCATGTCGAGCGTCCAGCGGCGTGGGCGGAAGTCGCTCGCCTGAAA
TCATGGAGGAAATGGGATCTCCATCGCGACGAAAAGTCACTCCGCACGTG
GGTCTGGAGATTTATGATGCACTCCACGCCTACTGTTGTTTCCCTCCCTC
CGCGCCCTTGCATAGAGTCTCCTAAATCGCCAGACCCACCACGTATCCTC
TTCCTTCCCCTGATCCTGGCGCGGCGCCGGTCCAGAAGATCCCACACACA
AACAAGGGTGCCGGTCTCGGAACAATAAAACCAGACTTGATGACCCCGCG
AACTTTTATCGACGGAACCCCCTCGCGAATTTCTGTTCGCTTTTTCGCTT
TTTCTTGTCCACACAGCCAGCACGCCAACTCCGCCACGACACTACATTGT
ACTTTCCCTGCTTTGCAGTGACATTCGTCCATCCCCACCACCTTCCCTTC
TACCCGCGAGGTGAGACACGGACGCGGTGCGTGAAACGCACAACTCGAAT
GATTCCCGACGCATGAGAGAAAGCCCGAAAAGAGGCAGAAGTAGGACGAG
GACCCCACCCTATCGATAGGAGATCAGCACATGTTTAATTCGTATCCGTT
TATCGGTTCATCGTCACCCGCGCGCCTCCGGGAAGGAACTCATTTGCTAT
ACAGCAGAAGCACCACCCTCAGACGCTCAATGACAGCAGCAGCGCGAAAC
AGATAGTACAGACAGCGGTATAGTTGGAGATCGATCTGGCCCGATTTTTT
TTATTTTCGGCTCCTTTATTTTGGTGAGTTGCCTCCTTGTCTCGCAGCGC
TCTCGCTTCGCCGCGCTCTCGGCAAGGAGCGGCACTCTCTCTCTCATCTT
CTCCTCTCCTTTTCGCCCTCCCAGTGTGTTGCTCGCGTGCGGGTTTATCT
CTCCGGAGAGAGAGGGGGGATAGATTTCGACGCTTGTTGCGCCGCGATTT
TGCGGGTTATTTGGTTTTGAGTGGAGAAGTCAGATGGTCCTTCGATTTGG
TAGGCTATCTACACATGTATCTAGTCTAACAGGGGTACCCAGTAGAAAGT
AGACATGACAACAGTCTCTCCATGTATCGACAGAAGTGGGCTTCGCCTGC
ACTCGTGTGCAGGCTACTCTGTAACTCTGTATGCCCCGCAGGTGAGTACC
CATACTATCTCTTGTGAGGTTAAGGTGGAAAGTGGAAAGTGGTGATGATA
TTGTTTCCGGAGACTCAGAAGTGTGTACATCATGTTGAAGTACAAACTGC
GTATACATCCCGCATATGATTTCATCCCGAAGTAGCTCCTTGAACATCTT
ACAAAGTCTTTCCAGAGTTTTACTGAGAATGGGCAGTGCTGCGGTTGAAA
TGTAAATAAATAATAAATAGTCCCCAGGTTGTAGAAGTAGAGAGGCACGG
CCCAGTCGGAAGCCGTTTTTTTGTTAAGATGCCATTACCGCCCGTTGTTA
TGTTATGCTCGTTCTGCCCCTCTGATAAAAAGCTCGCTCTGAATGAAGGC
AGGCGAAGTGCGCATCACTTGATGTTATTCTTGTGGAACCAGCTCTGCTA
CTACTGTGGAGCACACTAATTAGATAAATGCACCACGTGTGTGTGTGCCC
AGTTGGCAGGTACTACATAGCTGTCGTCGCAATAGCACCACACCCCAGAC
GTTACCAAAGGTATTAAAATACTTCTCCAAGATCGAAAATCAGAATAATC
TAAAACCTTTTGCCTGTATAGCTATATCGCTGATCGCTATCGCTATTAGC
TGTTAAGAGCCGTCCATGCATGGAGCTGCCTGTAGACAGCTAGCTGCGTA
GCCTTTCGAGACCGCAGGTTGCTGTCTGTTGACCGCTAGCTGCGCAGCTT
CTTGAAACAAAAGCTGTCTGTCGACCGCTAAGCTGCGCAGCTTCTTGAAA
CAATAGCTGTCTGCAGGCAGCTAGCTGCGCAGCTTATCGAGACAGCAGCT
GTCTGCCAGAGACCACCTTACTAGTAAGGTATTGGCAATCGATACTTTCC
ACCTTACCTATAAGGAGAGTATGCACTCCCCTACGGGCATACAGCGTAGC
CGGCACTCCGGGTGCAGGCAAAACCCCCTTTAGATACTTCCGTAGATAAG
AGACTTACGTACGTACTACTACATACCGAAGTATGTTGAGACTCGCCCTG
GTGGTCTAGTTGGTACCCCCGAACAGCATCTAGCAGACAGGTCGTGAGTT
CGAAGCTCAGCGGAAGCGACTCTTTCTTGCGAAGTGAGTTTTTCCTCTCG
CTTCCGTCCCTGTGAAGTGGATAGCGCTTAGCGTGTGTACACAAACTTCG
GCCTCACCGCCGACGAGGGAAAGGGACGGCCGAACCCTTCTCGCGACAAG
AATCTTAGGCAAGCACCGCAGACGGGGGGAGTGGGGGCCCTGGGGAAAAG
GGACCCTTCTGTGTGACCACGGTTCAGTACTCTGGCAAGATGTCCTCGTG
ACAGGGAGGGAGCCCATCGAGCGGCACTGGAAACAAATGTGAAAAAAAAA
ACGAAAAAAGATAACATGTGTAAAATGTTGTTAACTTTTTGCAGGTATCT
ACCAACCAATCGCAGCATAAAGCTGGCAGCACCATCTGACTTCTTCTCCA
CTAAAAAAAAAAGGACCCGCCAACCGCGGGTACTAAACAAGCGTCGAAAT
CAACCCCCCCTTCTCTCCGAGAGATCCCCTCAACCTTACGCGGCACCGGT
TTATCTCGGCATGTTTGCACATACTTGATTAATCCACTACTCTACTGCTA
CTACTGTGTACGTGTCCATTTGGCAGTCGACAGCTAAATAGCGTAGCACC
ACACCTCCGAAGGCAATGATCGTTTGACATTCCTACATGTTGTAGATACG
TACGTACGTACGCCCATGGAAAAACAAAACAAATCGAGCACGGCAGCAGT
GTGAAAAGGCCAGTTGTCACTTGGATATTGTTGTTTTTGTTTCTTGTTGC
TTCTCACATTAGCTCTCTCTTTACCGTAAGTGACACAAGATACCACACCC
CCTGGACAGATTTTCAAAGCTCGATTCCTCCCCCGCAAGAAGAGTGCCAG
TGCCAAAAAGGGTGGCGTTGGAAAGATCTAGTCAAGGGCTGTCCGAATAT
GTGCCGTTTGGTGCTGGCACCTTCTTCGTTACGGAGTAATGAAGCTCTAA
AATTCAGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAGTCCCAAA
ACATCCCATATATCTTGCCCAGGTACTCATGAAGGATCCAACAAGGTCCC
TACTTCCTGAGACCTTAAATGGATGTCCTTCGATACTCCACACTTGTATA
TGTACCATATGCAAAAATCAGCCCGCGGGGCGGCTTTTGTTCAAACTTGC
GTTTTGCTGTTCGAGGGGGATGCGTGTAGTCTGCGGAGCTTCTGGTTGGT
AAATGCTGACCGCAATCGCCCTATCCCCTTCCCCCCACGTCCTTTCCCCC
CTCCCTCACTTCGCGTTGATTCCCTGAAATTGCGGGGGGGGGGTCGGCAA
TCATCGAAACTGCTCCATCTGTGACTATTAAGACATAAATACCACCGAGA
ATATGTTACGACGCCTGGGCAAGCGGTGGGGATTCGTGGCGGTGGTTGCG
GCGATCTCGGCAGGCGGAGCAGGGCTTGTTGAGGCAAGCACGTCGGTCGA
CCTGGGCGATCTGTACCCGGGGTGCCGGGGAGTATTGGAGCACATAGGTG
AGTGGGGACGGGATGGGATGATGCAGCTGGTTAAAAATGCATCTGTATGC
CGTGTAGGCGATACAAGGTACCACACACCCCCTCGACCGAATTTTAGAGC
TCCCTTATTACTCCGTAACGGAGAGGGCGCCAGCACCAAACGACACATTT
TCGGAAAGCCTTCCACTAGATCTTTCCAACGCCACCCACCCCCTTTCGGC
ACCTGCACTCTTCTTGCCGCTGGGGAGGAATCGAGCTCTGAAGATCTGTC
CAGGGGGTGTGGTATCCTGTTTCACCTATGTACGGCATCCCACATGCTTA
TTTTCGACGGCTACAGTATGTATTGAACAAAAAGGTATTGTGTTTTTCCT
GTCGCTTTTTATGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTGTTTTATAAAAGGGATGGTTTATCCCCCTCCCGGGAAC
AAAAAATTTATGTCGCTATCACGTGTNNNNNNNNNNGTGTTGGGACAGAA
AGTTTTGTTTGTTGTTGTGGTGTTTTTTTTTGTTTTTTTTTTTTTTTTTT
TTTTTTTTTATGCAAATTTAGCGTGGTTGTCGACGAAGGAAAGGGACGGC
TGAACCCTTCCCGCGAGACAAAAAGCTTAGGCAGCAAGCACCGTAGACGG
GGGGAGTGGGGACCTTGGGGAAGGGAACCCTTCTGTGTGACCACGGTTCA
GTTCTCTGGCAAGATGTCCTCGTGACAGGGAGCCAGCCCATCGGGCACTG
GAAATAATTGTGAAAATAAATAAATATATAGAAGTATATATATATGGTTG
GGACACGAAATATCGGTGCACGGAAGACTATAATAGTATGCCACTGGCTA
TTCACATCAATACTAACTGACGTGGTGTATCCTCGGAGTCCCAAGAGGCA
GGCACCGCAGGAGGGGGTCCACCCCCCCCCCCCCTGTGTGACCCCAGTTG
GGTCGTCTAGCTAGTCATAGTGGAGGAAGGGGGGGGCCAGGCCAGTGGGG
CAAAAAACGAAAAAGCCTACCAATAATGGGAAGAAAGGAGTAATCCAGTA
ATCCTTGGAGTCCGTGAGACTCACGTTGTCTCCGAAAAAGGATCATGAAC
GAGGTCGCCATACCGAGACACGGGAAAGAGCCACGAGCAGTAGTAAAAGT
GGCCCTCAAACGGGACAAGTACGTCACGTACCCCCCACCACGTACATGGC
ACGAGAAAACAAAAACGGCAACAAACTGGTATTTTATTCGCATGCGAAAA
GTCTCGCAAGAGGAGATAAAAGAGAAAAGAGTGCACCAAAAGCCCCCCCA
ATCACTCCCAACCGCTGTTCGCACATCGTCGTGTCCGGCGCGAAAAGTTT
GATACTCCCATCATGTAGGTATGTATGTATTAACCAACCCTGCTTGTATA
GGACTAAAACAGATCACCAGCAAGAGGATGCAGTCGCTTGGTATGCAATG
CTCCTTGCTGGCTGGCTGGCCGGGGGGGGGGGTCGGCGCTTGTGGTTCAG
GAGCAAGCAAACTGGTGTACAAATAAATATCGACTGACGCGGATCCCCCA
CCAACTTCGGAAAAACAGAAACGCGTGCTCTCTTTCCGTCTCTCTCTCAA
ACTCTCTAGAGCTGTGTGTCTCTGCGCGTATATATTTACCTACGGTTACT
TACCTACGGTGCCCCTCCCCCCCCCCCCCCCCCCCAAAGGGGCGGGCACC
GCGCCAGGGGCGGGGGCGGGACCCACAACCGGGAGGGGGGGGGGGGCGGC
GGGGGGGGGGAGGNNNNNNNNNNGTTTGTTCTCATCTGCCTCAATTTTTT
TCCTTCCGTTTTCTACCTCACGCTCCCCCCCCCCCCCCCCCCCCTCCTCG
AAGGCGACGGCTACTGCGACAGGTACGGGGACGACACCAACAACGTCGAG
GAGTGCGGGTTCGACGGAGGGGACTGCTGCATCTGCACGTGCGTGAGCAC
CGACTACCCCTGCCCAGACGACGCCCGCGCCTACCGCTGCAACGACACGT
CGGCCGAGTGCTTCGGAGACCCCATCCCAACGCCCAGCCCCGCATCAGGA
GAAACCGAGGTCACGGCCGACGACAGCTCGGCCTCTCTCTCCGGGATCGC
CTCGTCCACCGCCGCCGCCGCGGGCGCGCTCGTCGCGACGGTCCTCTGCG
GGGGCTTCGTGGTTGCGGTGGGGTGGTAGGTAGTAATACAGTAGAGAGAG
AGAGAAAGAGAAGGGTTTGTGGTAGTATGGGAAAAACAAAAAAAAATGGT
ACCTATGTACTACCAGTCAGTACCAGCGAGCGGGCGCACGCGCGTTTTTT
GTTTTTAATTTGTAGACAGCCCTTGATTTTTTGTGGAGTGGTTTCGCGCC
GCCCTCGACGGCGGTAGTGTGGGTGAGTGCCGAGCTGCTGTAGGCCGGTG
TGGGACGGCCTGCGATCTTTTCGGCCGAGCGTACGTACGTGAGCACGAAA
CTCACGCGAAGCAGGCGGCCCGGCCCGGCTCGGTCCGCCGGCCCAGCCTG
CGCTTGGAATCGTTTCGTTTGGTCCCGTGCTTATCCTCCTCCGCCCCGCC
GCGGGCGCGTTCGCGATTGGCAGATGGGGACGGACGGGTGTGGCGGCGAG
GTTTAAAGACAACGCGGCTTTTCGTGTGTGTGTGTGTGTGTTTGTGTGTG
CTTGGGGAGTTGGGTTGGTGTGTTGCTCTGCTGGTGTCTCGTGTGTGCAG
CGCGCGGGGGGTCAGCTGTGTTGCCTTTCTCGGCCAGCGGGGAGGTGTTG
ATTGGTTTGTTATATTGACACGGCGGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8164:2256..8733-

>mRNA_L-elsbetiae_contig8164.17161.1 ID=mRNA_L-elsbetiae_contig8164.17161.1|Name=mRNA_L-elsbetiae_contig8164.17161.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig8164:2256..8733- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTACGACGCCTGGGCAAGCGGTGGGGATTCGTGGCGGTGGTTGCGGC
GATCTCGGCAGGCGGAGCAGGGCTTGTTGAGGCAAGCACGTCGGTCGACC
TGGGCGATCTGTACCCGGGGTGCCGGGGAGTATTGGAGCACATAGATGTT
ACGACGCCTGGGCAAGCGGTGGGGATTCGTGGCGGTGGTTGCGGCGATCT
CGGCAGGCGGAGCAGGGCTTGTTGAGGCAAGCACGTCGGTCGACCTGGGC
GATCTGTACCCGGGGTGCCGGGGAGTATTGGAGCACATAGGCGACGGCTA
CTGCGACAGGTACGGGGACGACACCAACAACGTCGAGGAGTGCGGGTTCG
ACGGAGGGGACTGCTGCATCTGCACGTGCGTGAGCACCGACTACCCCTGC
CCAGACGACGCCCGCGCCTACCGCTGCAACGACACGTCGGCCGAGTGCTT
CGGAGACCCCATCCCAACGCCCAGCCCCGCATCAGGAGAAACCGAGGTCA
CGGCCGACGACAGCTCGGCCTCTCTCTCCGGGATCGCCTCGTCCACCGCC
GCCGCCGCGGGCGCGCTCGTCGCGACGGTCCTCTGCGGGGGCTTCGTGGT
TGCGGTGGGGTGGTAGGCGACGGCTACTGCGACAGGTACGGGGACGACAC
CAACAACGTCGAGGAGTGCGGGTTCGACGGAGGGGACTGCTGCATCTGCA
CGTGCGTGAGCACCGACTACCCCTGCCCAGACGACGCCCGCGCCTACCGC
TGCAACGACACGTCGGCCGAGTGCTTCGGAGACCCCATCCCAACGCCCAG
CCCCGCATCAGGAGAAACCGAGGTCACGGCCGACGACAGCTCGGCCTCTC
TCTCCGGGATCGCCTCGTCCACCGCCGCCGCCGCGGGCGCGCTCGTCGCG
ACGGTCCTCTGCGGGGGCTTCGTGGTTGCGGTGGGGTGGTAG
back to top