mRNA_L-elsbetiae_contig816.17158.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig816.17158.1
Unique NamemRNA_L-elsbetiae_contig816.17158.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig816.17158.1 vs. uniprot
Match: D8LIL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL1_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 4.640e-49
Identity = 84/89 (94.38%), Postives = 87/89 (97.75%), Query Frame = 1
Query:    1 QDKENLKMMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDREDAQFKEEKNLLVSTLSQLQLDDAGS 267
            QDKENLKMMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDR+DAQFKEEK LLVSTLS LQL++AGS
Sbjct:   15 QDKENLKMMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDRDDAQFKEEKKLLVSTLSLLQLENAGS 103          
BLAST of mRNA_L-elsbetiae_contig816.17158.1 vs. uniprot
Match: A0A6H5JQH7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH7_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 3.740e-34
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 1
Query:   46 KSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDREDAQFKEEKNLLVSTLSQLQLDD 258
            KSPNIQYEAFHVFKVFVANPKKP EVTKILVNNKAKLIAYLENFHNDR+DAQFKEEK LLVSTLS LQL+D
Sbjct:  254 KSPNIQYEAFHVFKVFVANPKKPPEVTKILVNNKAKLIAYLENFHNDRDDAQFKEEKKLLVSTLSLLQLED 324          
BLAST of mRNA_L-elsbetiae_contig816.17158.1 vs. uniprot
Match: G4YX18_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YX18_PHYSP)

HSP 1 Score: 122 bits (305), Expect = 5.660e-32
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = 1
Query:    4 DKENLKMMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDREDAQFKEEKNLLVSTLSQLQLDDAGS 267
            +KENLKMMMNLLRD S NIQ+EAFHVFKVFVANPKKP  +++ILVNN+ KLIAYL+NF N +ED QF EEK LL+ TL  L++ +A S
Sbjct:  108 EKENLKMMMNLLRDTSANIQFEAFHVFKVFVANPKKPEAISQILVNNREKLIAYLKNFQNSKEDPQFIEEKALLIRTLEGLKVGEAAS 195          
BLAST of mRNA_L-elsbetiae_contig816.17158.1 vs. uniprot
Match: A0A1W0A6Q8_9STRA (Calcium-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6Q8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.750e-32
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    7 KENLKMMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDREDAQFKEEKNLLVSTLSQLQL---DDAGS 267
            +ENLKMMMNLLRD S NIQ+EAFHVFKVFVANPKKP E+T+IL+ NK KLIAYLE F N++ED QF EEKNLL+ TLS L+L   DD G+
Sbjct:  249 RENLKMMMNLLRDPSVNIQFEAFHVFKVFVANPKKPNEITQILLTNKDKLIAYLEKFQNEKEDEQFVEEKNLLIRTLSTLELRKEDDEGT 338          
BLAST of mRNA_L-elsbetiae_contig816.17158.1 vs. uniprot
Match: A0A836CD73_9STRA (Mo25-like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD73_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.270e-31
Identity = 60/82 (73.17%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    4 DKENLKMMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDREDAQFKEEKNLLVSTLSQLQ 249
            +++NLK MM LLRDKSPNIQYEAFHVFKVFVANPKKP E+T+ILV N+AKLI YLENFHND++D QF++EK LL++TL  L+
Sbjct:  240 NRDNLKKMMMLLRDKSPNIQYEAFHVFKVFVANPKKPPEITRILVANRAKLITYLENFHNDKDDEQFRDEKALLITTLEALE 321          
BLAST of mRNA_L-elsbetiae_contig816.17158.1 vs. uniprot
Match: A0A3L6V1E9_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A3L6V1E9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 6.310e-31
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    7 KENLKMMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDREDAQFKEEKNLLVSTLSQLQL 252
            ++NLKMMMNLLRD S NIQ+EAFHVFKVFVANPKKP EVT+IL+NNK KLIAYLE F ND++D+QF EEK LL+ TL  L+L
Sbjct:  224 RDNLKMMMNLLRDTSANIQFEAFHVFKVFVANPKKPNEVTQILLNNKDKLIAYLEKFQNDKDDSQFVEEKALLIRTLGTLEL 305          
BLAST of mRNA_L-elsbetiae_contig816.17158.1 vs. uniprot
Match: A0A067CHG8_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHG8_SAPPC)

HSP 1 Score: 122 bits (307), Expect = 6.920e-31
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    7 KENLKMMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDREDAQFKEEKNLLVSTLSQLQL 252
            +ENLKMMMNLLRD S NIQ+EAFHVFKVFVANPKKP E+T+IL+ NK KLIAYLE F N++ED QF EEK+LL+ TLS L+L
Sbjct:  249 RENLKMMMNLLRDTSVNIQFEAFHVFKVFVANPKKPNEITQILLTNKEKLIAYLEKFQNEKEDEQFVEEKSLLIRTLSTLEL 330          
BLAST of mRNA_L-elsbetiae_contig816.17158.1 vs. uniprot
Match: A0A7S2V3C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3C4_9STRA)

HSP 1 Score: 122 bits (307), Expect = 9.490e-31
Identity = 59/85 (69.41%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    7 KENLKMMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDREDAQFKEEKNLLVSTLSQLQLDDA 261
            +ENLK++MNLLRD S NIQ+EAFHVFKVFVANPKKP E+ +ILV NK KL+AYLENFH +RED QF EEK LL++TL+ L++  A
Sbjct:  275 RENLKVIMNLLRDTSANIQFEAFHVFKVFVANPKKPPEIVRILVTNKTKLVAYLENFHTEREDNQFAEEKQLLITTLASLEMPPA 359          
BLAST of mRNA_L-elsbetiae_contig816.17158.1 vs. uniprot
Match: H3G895_PHYRM (Uncharacterized protein n=45 Tax=Peronosporaceae TaxID=4777 RepID=H3G895_PHYRM)

HSP 1 Score: 121 bits (304), Expect = 1.910e-30
Identity = 61/88 (69.32%), Postives = 74/88 (84.09%), Query Frame = 1
Query:    4 DKENLKMMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDREDAQFKEEKNLLVSTLSQLQLDDAGS 267
            +KENLKMMMNLLRD S NIQ+EAFHVFKVFVANPKKP  +++ILVNN+ KLIAYL+NF N++ED QF EEK LL+ TL  L++ +A S
Sbjct:  247 EKENLKMMMNLLRDTSANIQFEAFHVFKVFVANPKKPEAISQILVNNREKLIAYLKNFQNNKEDPQFIEEKALLIRTLEGLKIGEAVS 334          
BLAST of mRNA_L-elsbetiae_contig816.17158.1 vs. uniprot
Match: A0A485KMR1_9STRA (Aste57867_9258 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMR1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.630e-30
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    7 KENLKMMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLENFHNDREDAQFKEEKNLLVSTLSQLQL 252
            ++NLKMMMNLLRD S NIQ+EAFHVFKVFVANPKKP E+T+IL+NNK KLIAYLE F N++E+ QF EEK LL+ TLS L+L
Sbjct:  249 RDNLKMMMNLLRDTSANIQFEAFHVFKVFVANPKKPNEITQILLNNKDKLIAYLEKFQNEKEEEQFVEEKALLIRTLSTLEL 330          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig816.17158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIL1_ECTSI4.640e-4994.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQH7_9PHAE3.740e-3492.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
G4YX18_PHYSP5.660e-3269.32Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A1W0A6Q8_9STRA5.750e-3272.22Calcium-binding protein n=1 Tax=Thraustotheca clav... [more]
A0A836CD73_9STRA1.270e-3173.17Mo25-like-domain-containing protein n=1 Tax=Tribon... [more]
A0A3L6V1E9_9STRA6.310e-3174.39Uncharacterized protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A067CHG8_SAPPC6.920e-3174.39Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A7S2V3C4_9STRA9.490e-3169.41Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
H3G895_PHYRM1.910e-3069.32Uncharacterized protein n=45 Tax=Peronosporaceae T... [more]
A0A485KMR1_9STRA2.630e-3073.17Aste57867_9258 protein n=1 Tax=Aphanomyces stellat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig816contigL-elsbetiae_contig816:27251..30447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue3e-35
Seed eggNOG ortholog2880.D8LIL1
Preferred nameCAB39L
KEGG koko:K08272
KEGG Pathwayko04150,ko04152,map04150,map04152
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000131,GO:0000920,GO:0001700,GO:0001775,GO:0001932,GO:0001934,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004672,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005815,GO:0005816,GO:0005829,GO:0005856,GO:0005886,GO:0005933,GO:0005937,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006970,GO:0006971,GO:0007049,GO:0007050,GO:0007114,GO:0007117,GO:0007118,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007405,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0008360,GO:0009628,GO:0009790,GO:0009792,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010799,GO:0010800,GO:0010959,GO:0012505,GO:0015630,GO:0016020,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017145,GO:0018105,GO:0018193,GO:0018209,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019954,GO:0022008,GO:0022402,GO:0022414,GO:0022603,GO:0022604,GO:0022898,GO:0023014,GO:0023052,GO:0030141,GO:0030154,GO:0030234,GO:0030295,GO:0030427,GO:0030436,GO:0030447,GO:0030448,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032147,GO:0032153,GO:0032268,GO:0032270,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032501,GO:0032502,GO:0032505,GO:0032878,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033554,GO:0033674,GO:0034613,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0034774,GO:0035556,GO:0035839,GO:0036211,GO:0036230,GO:0036445,GO:0040007,GO:0042119,GO:0042325,GO:0042327,GO:0042995,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043266,GO:0043267,GO:0043269,GO:0043271,GO:0043299,GO:0043312,GO:0043332,GO:0043412,GO:0043539,GO:0043549,GO:0043934,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044732,GO:0045055,GO:0045165,GO:0045321,GO:0045786,GO:0045859,GO:0045860,GO:0045937,GO:0046872,GO:0046903,GO:0048103,GO:0048315,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051286,GO:0051301,GO:0051338,GO:0051347,GO:0051641,GO:0051716,GO:0051726,GO:0055057,GO:0055059,GO:0060205,GO:0060255,GO:0060341,GO:0060583,GO:0061351,GO:0061695,GO:0061794,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071214,GO:0071470,GO:0071476,GO:0071574,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0071958,GO:0072089,GO:0072697,GO:0072741,GO:0080090,GO:0097708,GO:0098722,GO:0098772,GO:0099503,GO:0101002,GO:0104004,GO:0120025,GO:0120038,GO:0140096,GO:1901016,GO:1901017,GO:1901379,GO:1901380,GO:1901564,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1904062,GO:1904063,GO:1904813,GO:1990234,GO:1990778,GO:2000099,GO:2000100,GO:2000112,GO:2000769,GO:2001141
EggNOG free text desc.positive regulation of peptidyl-threonine phosphorylation
EggNOG OGsKOG1566@1,KOG1566@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-18_003190.1
Exons3
Model size453
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig816.17158.1prot_L-elsbetiae_contig816.17158.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig816 27251..30426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.572837-CDS-L-elsbetiae_contig816:27250..275141622816900.572837-CDS-L-elsbetiae_contig816:27250..27514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig816 27251..27514 -
1691683898.0964935-CDS-L-elsbetiae_contig816:27250..275141691683898.0964935-CDS-L-elsbetiae_contig816:27250..27514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig816 27251..27514 -
1622816900.5842173-CDS-L-elsbetiae_contig816:28481..285831622816900.5842173-CDS-L-elsbetiae_contig816:28481..28583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig816 28482..28583 -
1691683898.110588-CDS-L-elsbetiae_contig816:28481..285831691683898.110588-CDS-L-elsbetiae_contig816:28481..28583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig816 28482..28583 -
1622816900.5951533-CDS-L-elsbetiae_contig816:30360..304261622816900.5951533-CDS-L-elsbetiae_contig816:30360..30426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig816 30361..30426 -
1691683898.1226137-CDS-L-elsbetiae_contig816:30360..304261691683898.1226137-CDS-L-elsbetiae_contig816:30360..30426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig816 30361..30426 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.6054106-UTR-L-elsbetiae_contig816:30426..304471622816900.6054106-UTR-L-elsbetiae_contig816:30426..30447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig816 30427..30447 -
1691683898.1372921-UTR-L-elsbetiae_contig816:30426..304471691683898.1372921-UTR-L-elsbetiae_contig816:30426..30447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig816 30427..30447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig816.17158.1

>prot_L-elsbetiae_contig816.17158.1 ID=prot_L-elsbetiae_contig816.17158.1|Name=mRNA_L-elsbetiae_contig816.17158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MMMNLLRDKSPNIQYEAFHVFKVFVANPKKPREVTKILVNNKAKLIAYLE
NFHNDREDAQFKEEKNLLVSTLSQLQLDDAGSSSGGGGGSHHHRSSSSAS
ASGASGSSSTGGAGAEGAPAAARQQQEHHRRSSSTSSKPSAER*
back to top

mRNA from alignment at L-elsbetiae_contig816:27251..30447-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig816.17158.1 ID=mRNA_L-elsbetiae_contig816.17158.1|Name=mRNA_L-elsbetiae_contig816.17158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3197bp|location=Sequence derived from alignment at L-elsbetiae_contig816:27251..30447- (Laminarionema elsbetiae ELsaHSoW15)
CAGGACAAGGAGAACCTCAAGATGATGATGAACCTCCTGAGAGACAAATC CCCCAACATACAGTACGAGGCGTTCCACGTCTTCAAGGTGCGTGCGTGCG CCCTGGCGTTGTTGCTGCGTGTTTGCGCTGCTCTTATTAACTCTCACTTC CTCAGCAACTTCGCAGGAGAGCACAGTAGTAAGTAGTGTGCCCGCAAAAA CAAATCCCCCCCCTGTGTGTTATCGGGTGGTATTTTCTTGTTCAACGTTG ATGCATGGGATACGTGAATGATGTCAAGAAGGACCTTCCTTTGCTGTCAG CTTTCGCGTTCCACCTCTTATTTATCATATTTAGTGACACGTTTCAGGCA TAATTCAGCACATCAAGCTGGGTTTGTTCCCGAAAATTACAAGTTCTTGA AAAAGAAATCAGGAAATCAAAGAAAGAAGGTCCTCGCATTAGAAACCGGA CTCCGGACTCCATGGTGAACTACCGTAGGTGACATAAGATAAGACACCCC CTGGACCGATTTTCAAAGATCAAGTACTCCACAGCAAGCAGAGCGTCAGT CCCGAAAAGGGTGGCGTTGGAAAAATCTCATCGTCGAGAGCTGTCCGGAA ATGTGGCGTTTGTGGTTAGAATGGTATTCGTTGCGGAGTAACCAAGCTTT CAACATCGGTCCAGGGGGTGTCTTATCTTATGTCACCTACGGTACTGGTA ACACTTCAGTAACACAGCAGTGATGTATTATTGGTCCGGCCGAATAGGAT AACACCCAACATATTAGAAAAGTTCGAACCTCCCCTGCACGACTCTGCCG GGTGAACCAGCTAATATTCCGGGGAAAAGCCCACCGTAAGCTCTTGTCTT TTGTTTTCGACGCTTGACTTAAGGCAGAATCAAATGAGCACGAGACCCAC GGGAGTGTTGTATTTAGTGTGCCGTGTTGCGAAAGCTTTTCTTAGACAGG CCACGCGAGTGCTGCCGTTTTCTTGCTTTCGGTAGGTACATCTCGGGCTT CGTTTTAGGTACCATGGTACCATATGTGTTTTCCTCTGGGCAAAGTGTTT TGCTTGTAGAAGGAAGGACGAGGGTGTTTTCATGGCCGTTTGACGAATAA CGTATCGTCTTGGTTTGCTCTTCTGTGTGTCAAACGGAGTGCTGTACCCA GAAAATGTGGAGTCGCTGCAGAGATTTGGTGGCCTTCGTAGCTGACCACG TCCCCGCCGTCATAAAGCAGACCCCAGAACAGACCACAAAGCCCACAAAA CAAAACAGCAGTGCACAGTCGCAGGAGGGGTCCAACCCCCCCCCCCTCCT TTTTGACCCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGAGGAAGGGGGAC CAGTGGGGCAGACGACAAATATGCCACTGATGGGAGGGAAAAAAACAAAA AAAATCGACGCCGGCGGTGAAGAAATACCTAGTTGACAGGCCGGACGCAG GCCGCTACCATTTAGCAGAACATTTTTCTTGAAAAAGTATCATACGCCCG CCCTACGAGAGCACACTGAGCCCCTGAGGGGTCTTCCTTCTACCGCCCCA TGGTTGCAGAAATCAAGCATACCGTAATCATGCGGATTATCGCACCCCCG TGTTGGCGTTTGTTGTGGAGAAATACGCTATAGAAAAACGCCAACACGGG GGTGCGATAACCCGCATGATCACGGTAACATGATATACTCCGTAAATGTT GTTTTCTTCACATTAGCTCGTATAGTCGAGGTTGCTAATCCCCAAAAATA TATATACTTGAAGCAACTCTCACGGCCCGTGGTGAAAAAAAGTGCTGCTG GAGCCACCAGAAGATGTGACGACCGCTGGCTTCGTTGTGCGCCCGCCCGC CTTGCCTGTTGCAGGTGTTCGTGGCGAACCCCAAAAAGCCAAGAGAAGTG ACCAAGATCCTCGTCAACAACAAGGCGAAGCTCATCGCCTACCTGGAGAA CTTCCACAATGACAGGGTAAGCGCGGGCACGGGGCCGCCCGATTTTCGCG TGTACGGGACCCCTCGAAGAATCGATTGGTCATTCCCCGCGCCTCACGCG AAGAATGGAGGGAAACACGCCTTCGAAGCATGTGAAAAGGAGTGTTCAAA CGATGAGGCGAATGCATTGAAGCTTTTGGTGTTCAGAGCGCGAGGATCTG GGTGATTGATTTCTCCATGTCCCCAAGGTTCTGCACATGTGTATGCCCCC CCCCCACGGCTGGTGATGGTTGCGTTATCCATTGCTTACCCTTACCGCAC GGCGCGTGTCGATGAGAGCGGCGGGCTCCGGACTGTAGGACCGTTTTATA TCATCCGGGGAGTTGTCTACTTGACATTCTTTCGCTTTGTGTTGTGGCCT TTTTGGATTAGTGTTTTTTGTGTAGTTGGGGGAGGATAGTTTAACTTTTT AAAAATAAACAATGAATCAAAGATGGAACCTACCCCACACTAGAGCAAGG ACTCGATATGGGGTTTAAACAGTATTCCATACAGAGACGTAATATTTGGC GAAGCGAGCAGAAAAACAACCTAAAATATCAGAAGAGTTCAACCAACATC TCCCCTGCAAAGATTTGCGAGGTCGGCCAACAATTATTCAGGCGGGTAGA GCCCGCCGTGATGCCGTAATGTTGTCATCTACTTCAAAATAGGAACACAT CGCATTGTTAAACTAAATCAAAATGCTGGTTTAATATATGTGGGTTACTG CTTTTGAGGAGAAAATACAATATTAGTGGTAACCTTTGCGCAAGTTAGAC TGCTGTGACCACGATGAGAATCGACCGCATCATGCGTTGGATAAGTACGG ACAGATAAAGGTACTTGCTGAATGCGGGGATAAGAAGGTTCTTTAACGTG ACGACGAGACAAATACCAAGACCAACAACAACACCCCTTCCGCTTCCGTG GCGGGGCCCCTTGATTGGCACGCGGTTGAACAGGAGGACGCGCAGTTCAA GGAGGAGAAGAACCTTCTGGTAAGCACGCTGTCTCAGCTCCAGCTTGACG ACGCCGGGAGCAGCAGCGGCGGTGGCGGTGGGTCGCATCACCACCGCTCG TCGTCCTCAGCGTCAGCGTCGGGGGCATCGGGTAGCAGCAGCACGGGGGG GGCAGGGGCGGAGGGGGCTCCGGCGGCGGCAAGACAACAACAAGAACACC ACCGGAGAAGCTCGTCCACCTCTTCGAAGCCGAGCGCGGAGAGATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig816:27251..30447-

>mRNA_L-elsbetiae_contig816.17158.1 ID=mRNA_L-elsbetiae_contig816.17158.1|Name=mRNA_L-elsbetiae_contig816.17158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig816:27251..30447- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGATGAACCTCCTGAGAGACAAATCCCCCAACATACAGTACGAGGC
GTTCCACGTCTTCAAGATGATGATGAACCTCCTGAGAGACAAATCCCCCA
ACATACAGTACGAGGCGTTCCACGTCTTCAAGGTGTTCGTGGCGAACCCC
AAAAAGCCAAGAGAAGTGACCAAGATCCTCGTCAACAACAAGGCGAAGCT
CATCGCCTACCTGGAGAACTTCCACAATGACAGGGTGTTCGTGGCGAACC
CCAAAAAGCCAAGAGAAGTGACCAAGATCCTCGTCAACAACAAGGCGAAG
CTCATCGCCTACCTGGAGAACTTCCACAATGACAGGGAGGACGCGCAGTT
CAAGGAGGAGAAGAACCTTCTGGTAAGCACGCTGTCTCAGCTCCAGCTTG
ACGACGCCGGGAGCAGCAGCGGCGGTGGCGGTGGGTCGCATCACCACCGC
TCGTCGTCCTCAGCGTCAGCGTCGGGGGCATCGGGTAGCAGCAGCACGGG
GGGGGCAGGGGCGGAGGGGGCTCCGGCGGCGGCAAGACAACAACAAGAAC
ACCACCGGAGAAGCTCGTCCACCTCTTCGAAGCCGAGCGCGGAGAGATGA
GAGGACGCGCAGTTCAAGGAGGAGAAGAACCTTCTGGTAAGCACGCTGTC
TCAGCTCCAGCTTGACGACGCCGGGAGCAGCAGCGGCGGTGGCGGTGGGT
CGCATCACCACCGCTCGTCGTCCTCAGCGTCAGCGTCGGGGGCATCGGGT
AGCAGCAGCACGGGGGGGGCAGGGGCGGAGGGGGCTCCGGCGGCGGCAAG
ACAACAACAAGAACACCACCGGAGAAGCTCGTCCACCTCTTCGAAGCCGA
GCGCGGAGAGATGA
back to top