mRNA_L-elsbetiae_contig816.17154.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig816.17154.1
Unique NamemRNA_L-elsbetiae_contig816.17154.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig816.17154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig816contigL-elsbetiae_contig816:2581..3818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size569
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.1072485-CDS-L-elsbetiae_contig816:2580..29431622816900.1072485-CDS-L-elsbetiae_contig816:2580..2943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig816 2581..2943 +
1691683897.7592034-CDS-L-elsbetiae_contig816:2580..29431691683897.7592034-CDS-L-elsbetiae_contig816:2580..2943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig816 2581..2943 +
1622816900.1184027-CDS-L-elsbetiae_contig816:3612..38161622816900.1184027-CDS-L-elsbetiae_contig816:3612..3816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig816 3613..3816 +
1691683897.7704377-CDS-L-elsbetiae_contig816:3612..38161691683897.7704377-CDS-L-elsbetiae_contig816:3612..3816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig816 3613..3816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig816.17154.1prot_L-elsbetiae_contig816.17154.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig816 2581..3816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig816.17154.1

>prot_L-elsbetiae_contig816.17154.1 ID=prot_L-elsbetiae_contig816.17154.1|Name=mRNA_L-elsbetiae_contig816.17154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=189bp
GPSQDRRRLLERQTSCAPGRRPSQQAFFFTVWSPFSALCSQENHGALFLL
APPGYVVGGPTAMVARGNGATTSTATRRRRGLPRLLSAGWALLLLALSAA
PRSCSAKGLRAADQGSAAASLGSPSMLLDAGGGESNDHRGFEAQVLRGAD
DNERRTKGQDDRQISGLGWRPRGRQRQEDGSGANDSGTA
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mRNA from alignment at L-elsbetiae_contig816:2581..3818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig816.17154.1 ID=mRNA_L-elsbetiae_contig816.17154.1|Name=mRNA_L-elsbetiae_contig816.17154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1238bp|location=Sequence derived from alignment at L-elsbetiae_contig816:2581..3818+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCCATCGCAAGATCGACGGCGCCTTCTTGAAAGGCAGACTTCCTGCGC
ACCTGGGAGACGCCCTAGCCAGCAGGCGTTTTTTTTCACGGTCTGGTCTC
CCTTCTCCGCCCTCTGCTCGCAAGAGAATCACGGCGCGCTCTTTTTGTTG
GCTCCTCCAGGCTACGTAGTCGGGGGCCCTACAGCTATGGTGGCCCGTGG
AAATGGTGCCACCACCAGCACGGCGACGCGCCGCCGGCGGGGCCTGCCGC
GGCTGCTCAGTGCTGGCTGGGCGCTGCTCCTGCTGGCGCTGTCGGCGGCC
CCACGCTCTTGCTCCGCCAAGGGTTTGAGGGCAGCTGATCAAGGTTCCGC
CGCCGCATCGCTGGTGAGTACCGTGCAGATGGCGCCACCACTTAACGAAC
CCCTTATGTTTCCCGAGGGTCTGTTCTTGTTTCTTGTGTGGGGCATATTT
AGTTAAATAGTAGGTTCAGTGTATTAGGTTCTTATCGAGGTACTCAAGGC
GGCTCAAGTTCTTCTGCAATCTGCGAGCTTAAAGCAACAACTCCCGTGGG
GAGGGGGGGGGGGGGGGGGGGGGGCGGGAAGCGGGGGGTGGGTGGGGGCC
CCGGGTGTGGGAAACGGGGAACGGGTTTCGGGGCGTAAACCAGGGGGGGG
GGNNNNNNNNNNGTGTATGGTTGTTTTTTCGGTGGACGCAAGGCTGCGAA
TTTTTTCCGCCAATCCGGGAGCTAAACAAAACCTCGCCGGGGGGGGGGGG
GGGGGGGGGCTGCTCGGAAGCGTGCGATGGTTCGAGCCTCCGATTGATGG
AACCAGGGAACTGGCTTCAGGGCGTTAACGCAGCGGCTGGGGCAAATCTA
CGTTTCTATCTCCGCTGTGTATCGCCGCGGGCCCTGCCTGCCTGCATCTT
TTTCTCAACCCTTACCCTACCCCCCCCCCCCGGGGGGCGGCGTCGTTGCG
AAACGTCTCCACTCTTTTTTGTTAATTGGGCCTCCTTGCCCGCATCTTTG
CTTCTGTTTGCACGCGGCGATTTCGGATGCAGGGCTCGCCCTCCATGCTG
CTAGATGCAGGCGGCGGAGAGTCAAACGACCACCGAGGGTTTGAGGCGCA
AGTGCTCCGCGGGGCCGACGATAACGAGCGCCGAACCAAGGGCCAAGACG
ACCGCCAGATAAGTGGGCTAGGTTGGCGGCCGCGCGGGCGGCAGCGCCAA
GAGGATGGCAGCGGAGCTAATGACAGCGGCACTGCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig816:2581..3818+

>mRNA_L-elsbetiae_contig816.17154.1 ID=mRNA_L-elsbetiae_contig816.17154.1|Name=mRNA_L-elsbetiae_contig816.17154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1134bp|location=Sequence derived from alignment at L-elsbetiae_contig816:2581..3818+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCCATCGCAAGATCGACGGCGCCTTCTTGAAAGGCAGACTTCCTGCGC
ACCTGGGAGACGCCCTAGCCAGCAGGCGTTTTTTTTCACGGTCTGGTCTC
CCTTCTCCGCCCTCTGCTCGCAAGAGAATCACGGCGCGCTCTTTTTGTTG
GCTCCTCCAGGCTACGTAGTCGGGGGCCCTACAGCTATGGTGGCCCGTGG
AAATGGTGCCACCACCAGCACGGCGACGCGCCGCCGGCGGGGCCTGCCGC
GGCTGCTCAGTGCTGGCTGGGCGCTGCTCCTGCTGGCGCTGTCGGCGGCC
CCACGCTCTTGCTCCGCCAAGGGTTTGAGGGCAGCTGATCAAGGTTCCGC
CGCCGCATCGCTGGGTCCATCGCAAGATCGACGGCGCCTTCTTGAAAGGC
AGACTTCCTGCGCACCTGGGAGACGCCCTAGCCAGCAGGCGTTTTTTTTC
ACGGTCTGGTCTCCCTTCTCCGCCCTCTGCTCGCAAGAGAATCACGGCGC
GCTCTTTTTGTTGGCTCCTCCAGGCTACGTAGTCGGGGGCCCTACAGCTA
TGGTGGCCCGTGGAAATGGTGCCACCACCAGCACGGCGACGCGCCGCCGG
CGGGGCCTGCCGCGGCTGCTCAGTGCTGGCTGGGCGCTGCTCCTGCTGGC
GCTGTCGGCGGCCCCACGCTCTTGCTCCGCCAAGGGTTTGAGGGCAGCTG
ATCAAGGTTCCGCCGCCGCATCGCTGGGCTCGCCCTCCATGCTGCTAGAT
GCAGGCGGCGGAGAGTCAAACGACCACCGAGGGTTTGAGGCGCAAGTGCT
CCGCGGGGCCGACGATAACGAGCGCCGAACCAAGGGCCAAGACGACCGCC
AGATAAGTGGGCTAGGTTGGCGGCCGCGCGGGCGGCAGCGCCAAGAGGAT
GGCAGCGGAGCTAATGACAGCGGCACTGCGGGCTCGCCCTCCATGCTGCT
AGATGCAGGCGGCGGAGAGTCAAACGACCACCGAGGGTTTGAGGCGCAAG
TGCTCCGCGGGGCCGACGATAACGAGCGCCGAACCAAGGGCCAAGACGAC
CGCCAGATAAGTGGGCTAGGTTGGCGGCCGCGCGGGCGGCAGCGCCAAGA
GGATGGCAGCGGAGCTAATGACAGCGGCACTGCG
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