mRNA_L-elsbetiae_contig8157.17152.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8157.17152.1
Unique NamemRNA_L-elsbetiae_contig8157.17152.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig8157.17152.1 vs. uniprot
Match: A0A6H5KYH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH2_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.540e-9
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  228 KSLEALKRCDNDPHVITAVARRFWADR 308
            KSLEALKRCDNDPHVITAVARRFWADR
Sbjct:  341 KSLEALKRCDNDPHVITAVARRFWADR 367
[Close]
BLAST of mRNA_L-elsbetiae_contig8157.17152.1 vs. uniprot
Match: D7FHD2_ECTSI (PRP1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD2_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.720e-9
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:  228 KSLEALKRCDNDPHVITAVARRFWADR 308
            KSLEALKRCDNDPHVITAVARRFWADR
Sbjct:  702 KSLEALKRCDNDPHVITAVARRFWADR 728
[Close]
BLAST of mRNA_L-elsbetiae_contig8157.17152.1 vs. uniprot
Match: A0A835YM25_9STRA (PRP1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM25_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.530e-6
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 3 
Query:  186 FTPNLFSAPNVWA-GKSLEALKRCDNDPHVITAVARRFWADR 308
            +   +  AP     GKS+EALKRCDNDPHVITAVAR F  DR
Sbjct:  687 WAEEILCAPRAQQKGKSVEALKRCDNDPHVITAVARLFEKDR 728
[Close]
BLAST of mRNA_L-elsbetiae_contig8157.17152.1 vs. uniprot
Match: L8GYC6_ACACA (PRP1 splicing factor, Nterminal/tetratricopeptide repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYC6_ACACA)

HSP 1 Score: 52.4 bits (124), Expect = 1.230e-5
Identity = 26/47 (55.32%), Postives = 28/47 (59.57%), Query Frame = 3 
Query:  189 TPNLFSAPNVWA-------GKSLEALKRCDNDPHVITAVARRFWADR 308
            T  L  A  VW         KS++ALKRCDNDPHVI AVA  FW DR
Sbjct:  815 TGGLLWAQAVWMEPRPKQKSKSVDALKRCDNDPHVIVAVATVFWQDR 861
[Close]
BLAST of mRNA_L-elsbetiae_contig8157.17152.1 vs. uniprot
Match: A0A150G7Y9_GONPE (PRP1_N domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G7Y9_GONPE)

HSP 1 Score: 51.6 bits (122), Expect = 2.300e-5
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 3 
Query:  228 KSLEALKRCDNDPHVITAVARRFWADR 308
            K+ +ALKRCDNDPHV+ AVA+ FWADR
Sbjct:  799 KATDALKRCDNDPHVVAAVAQLFWADR 825
[Close]
BLAST of mRNA_L-elsbetiae_contig8157.17152.1 vs. uniprot
Match: A0A8J4B9W1_9CHLO (PRP1_N domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4B9W1_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 2.300e-5
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 3 
Query:  228 KSLEALKRCDNDPHVITAVARRFWADR 308
            K+ +ALKRCDNDPHV+ AVA+ FWADR
Sbjct:  835 KATDALKRCDNDPHVVAAVAQLFWADR 861
[Close]
BLAST of mRNA_L-elsbetiae_contig8157.17152.1 vs. uniprot
Match: A0A438KFT4_VITVI (Protein STABILIZED 1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438KFT4_VITVI)

HSP 1 Score: 50.1 bits (118), Expect = 2.740e-5
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 3 
Query:  228 KSLEALKRCDNDPHVITAVARRFWADR 308
            KSL+ALK+CD+DPHVI AVA+ FW DR
Sbjct:   39 KSLDALKKCDHDPHVIAAVAKLFWHDR 65
[Close]
BLAST of mRNA_L-elsbetiae_contig8157.17152.1 vs. uniprot
Match: A0A2P6NJY6_9EUKA (PRP1_N domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NJY6_9EUKA)

HSP 1 Score: 51.2 bits (121), Expect = 3.150e-5
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 3 
Query:  210 PNVWAGKSLEALKRCDNDPHVITAVARRFWADR 308
            P     KS++ALKRCDNDP VI AVA+ FWADR
Sbjct:  856 PKQRRAKSVDALKRCDNDPFVIVAVAKVFWADR 888
[Close]
BLAST of mRNA_L-elsbetiae_contig8157.17152.1 vs. uniprot
Match: A0A8J6CDX8_DIALT (PRP1_N domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDX8_DIALT)

HSP 1 Score: 50.8 bits (120), Expect = 4.280e-5
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 3 
Query:  228 KSLEALKRCDNDPHVITAVARRFWADR 308
            KS +ALKRCDNDPHVI AV+R FW DR
Sbjct:  804 KSSDALKRCDNDPHVILAVSRLFWRDR 830
[Close]
BLAST of mRNA_L-elsbetiae_contig8157.17152.1 vs. uniprot
Match: A0A383VG26_TETOB (PRP1_N domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VG26_TETOB)

HSP 1 Score: 50.4 bits (119), Expect = 5.810e-5
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 3 
Query:  228 KSLEALKRCDNDPHVITAVARRFWADR 308
            K+ +A+KRCDNDPHVI AVA  FWADR
Sbjct:  704 KAADAMKRCDNDPHVIAAVASLFWADR 730
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8157.17152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KYH2_9PHAE3.540e-9100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHD2_ECTSI3.720e-9100.00PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YM25_9STRA3.530e-661.90PRP1_N domain-containing protein n=1 Tax=Tribonema... [more]
L8GYC6_ACACA1.230e-555.32PRP1 splicing factor, Nterminal/tetratricopeptide ... [more]
A0A150G7Y9_GONPE2.300e-574.07PRP1_N domain-containing protein n=1 Tax=Gonium pe... [more]
A0A8J4B9W1_9CHLO2.300e-574.07PRP1_N domain-containing protein n=3 Tax=Volvox Ta... [more]
A0A438KFT4_VITVI2.740e-574.07Protein STABILIZED 1 n=1 Tax=Vitis vinifera TaxID=... [more]
A0A2P6NJY6_9EUKA3.150e-566.67PRP1_N domain-containing protein n=1 Tax=Planoprot... [more]
A0A8J6CDX8_DIALT4.280e-577.78PRP1_N domain-containing protein n=1 Tax=Diacronem... [more]
A0A383VG26_TETOB5.810e-574.07PRP1_N domain-containing protein n=2 Tax=Scenedesm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8157contigL-elsbetiae_contig8157:1714..2021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D7FHD2
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsKOG0495@1,KOG0495@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size309
Cds size147
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.0144057-UTR-L-elsbetiae_contig8157:1713..18741622816900.0144057-UTR-L-elsbetiae_contig8157:1713..1874Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8157 1714..1874 +
1691683897.721517-UTR-L-elsbetiae_contig8157:1713..18741691683897.721517-UTR-L-elsbetiae_contig8157:1713..1874Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8157 1714..1874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.028704-CDS-L-elsbetiae_contig8157:1874..20211622816900.028704-CDS-L-elsbetiae_contig8157:1874..2021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8157 1875..2021 +
1691683897.7354355-CDS-L-elsbetiae_contig8157:1874..20211691683897.7354355-CDS-L-elsbetiae_contig8157:1874..2021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8157 1875..2021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8157.17152.1prot_L-elsbetiae_contig8157.17152.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8157 1875..2021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8157.17152.1

>prot_L-elsbetiae_contig8157.17152.1 ID=prot_L-elsbetiae_contig8157.17152.1|Name=mRNA_L-elsbetiae_contig8157.17152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=49bp
MRCNSRGGFTPNLFSAPNVWAGKSLEALKRCDNDPHVITAVARRFWADR
back to top

mRNA from alignment at L-elsbetiae_contig8157:1714..2021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8157.17152.1 ID=mRNA_L-elsbetiae_contig8157.17152.1|Name=mRNA_L-elsbetiae_contig8157.17152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=308bp|location=Sequence derived from alignment at L-elsbetiae_contig8157:1714..2021+ (Laminarionema elsbetiae ELsaHSoW15)
CTATTATACACGCAACAGGTAGTCACACGGCGAAGCAAACGATCTGTGGT
GGTTGCCATGTTCGTTGAGGGTCGGCCCCCTTCCCGCGTATTTTTGTGCT
AAATATTAATAATGCAATTGCGCTGCACAAGCACCGCGCCACCACACCAA
AAAACGCAACAATGCGGTGTAACTCGCGGGGGGGGTTCACGCCCAATTTA
TTTTCGGCCCCCAACGTTTGGGCAGGCAAGTCCTTGGAGGCGTTGAAGCG
GTGCGACAACGACCCGCACGTCATCACCGCCGTCGCGCGGCGCTTCTGGG
CGGACCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig8157:1714..2021+

>mRNA_L-elsbetiae_contig8157.17152.1 ID=mRNA_L-elsbetiae_contig8157.17152.1|Name=mRNA_L-elsbetiae_contig8157.17152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=294bp|location=Sequence derived from alignment at L-elsbetiae_contig8157:1714..2021+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGTGTAACTCGCGGGGGGGGTTCACGCCCAATTTATTTTCGGCCCC
CAACGTTTGGGCAGGCAAGTCCTTGGAGGCGTTGAAGCGGTGCGACAACG
ACCCGCACGTCATCACCGCCGTCGCGCGGCGCTTCTGGGCGGACCGGATG
CGGTGTAACTCGCGGGGGGGGTTCACGCCCAATTTATTTTCGGCCCCCAA
CGTTTGGGCAGGCAAGTCCTTGGAGGCGTTGAAGCGGTGCGACAACGACC
CGCACGTCATCACCGCCGTCGCGCGGCGCTTCTGGGCGGACCGG
back to top