mRNA_L-elsbetiae_contig8154.17149.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig8154.17149.1
Unique Name	mRNA_L-elsbetiae_contig8154.17149.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 5.510e-72
Identity = 132/229 (57.64%), Postives = 173/229 (75.55%), Query Frame = 3

Query:  420 LSGLVFGLGLVVEAMMVSVCWTQKSLEGLIKTLKFLELVGTNMFALTNLAICVNLALIVLSHRTLTRVKSVSTPPLLFVLLTISTIMAALTVPFGDRVVILGTSFWLSHDTQVGRDWLVVSLFLVGFIAGVCMLAMMTWLLLFRMKEIKECWDLHVRIRYYFGLSVIGTAVNLSLGINGLVFVFVNPDG-RLLAWSWIFRWVHMVLDTIVLYGVLREREMDERGDDDRS 1103
            LSGLV+GL  VVE MMV+VCWT+  L G IK +KF+E V +NM A+T+LAICVNLALIV SHRTLTRV+SVS+P LL +LL IS  + ++TVP  + V ++GT FW+ +  Q   D +VVS+F + F+ G+CM  ++ WLLLFRMKE+KECW +  RIRYYF L+++GTAVN+ +GI   VFV  + D  RL  WSW+ R++H+ LDT VLYGVLRE++MDERG + RS
Sbjct:   58 LSGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISIGITSVTVPLWETVYVIGTGFWIVNSDQGSYDAVVVSIFFLEFMVGICMFVILAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLREKDMDERGGNARS 286

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BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 3.300e-69
Identity = 128/235 (54.47%), Postives = 173/235 (73.62%), Query Frame = 3

Query:  417 VLSGLVFGLGLVVEAMMVSVCWTQKSLEGLIKTLKFLELVGTNMFALTNLAICVNLALIVLSHRTLTRVKSVSTPPLLFVLLTISTIMAALTVPFGDRVVILGTSFWLSHDTQVGRDWLVVSLFLVGFIAGVCMLAMMTWLLLFRMKEIKECWDLHVRIRYYFGLSVIGTAVNLSLGINGLVFVFVN-PDGRLLAWSWIFRWVHMVLDTIVLYGVLREREMDERGDDDRSLGVTS 1118
            V +G+++ L  +VE MMV+VCW  K+LE LIKT+KF+EL  ++M ALT+LAICVNLALIV SHRTL RV+SVS+P LL ++L IS  M A TVP  + V+++GTSFW+ +  Q   D +VVS+F + FI G+CM  ++ WLLLFR+KE+KECW +H RIRYY  L+V+GT ++LS+GI   VFV       RL  W+W+FR++H+ LDT VLYGVLRE++MDER  + R   + S
Sbjct:    8 VTTGIIWSLCWLVEDMMVTVCWAGKNLEDLIKTVKFVELASSHMLALTHLAICVNLALIVSSHRTLKRVQSVSSPGLLTLMLAISMGMTAATVPLWETVIVVGTSFWIVNSDQGKYDAVVVSIFFLEFIVGLCMFVIVAWLLLFRLKEVKECWRIHARIRYYLCLTVLGTGISLSIGICSTVFVLGGLKQTRLAIWAWVFRYIHIALDTFVLYGVLREKDMDERVGNARPSDINS 242

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BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 8.060e-67
Identity = 120/222 (54.05%), Postives = 159/222 (71.62%), Query Frame = 3

Query:  456 EAMMVSVCWTQKSLEGLIKTLKFLELVGTNMFALTNLAICVNLALIVLSHRTLTRVKSVSTPPLLFVLLTISTIMAALTVPFGDRVVILGTSFWLSHDTQVGRDWLVVSLFLVGFIAGVCMLAMMTWLLLFRMKEIKECWDLHVRIRYYFGLSVIGTAVNLSLGINGLVFVF-VNPDGRLLAWSWIFRWVHMVLDTIVLYGVLREREMDERGDDDRSLGVTS 1118
            +  M+SVCW  + LEG IK LK+LE   +NM A+TNLAIC+NLAL+V SHRTL+RV SVSTP L+ + L IS + AA +VPF    V+ GT+FW+++  +   DW++VS+ ++ F+ G+CM  +++WL+ FRM+ IKECW LH RIRYYF L+VIGTAVNL+LGI+G  +VF  N    LL+ +W FR+ H+ LDTIVLYGVL  R MDE G    S   TS
Sbjct:    5 QGTMISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVNSVSTPALVLLFLAISVVAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFIIVSWLMAFRMRAIKECWKLHARIRYYFVLTVIGTAVNLALGISGFSYVFRANAGEYLLSLTWAFRYAHVALDTIVLYGVLGTRHMDEGGGSAASTSGTS 226

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BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot
Match: A0A6H5JWL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL8_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 4.070e-65
Identity = 120/239 (50.21%), Postives = 167/239 (69.87%), Query Frame = 3

Query:  423 SGLVFGLGLVVEAMMVSVCWTQKSLEGLIKTLKFLELVGTNMFALTNLAICVNLALIVLSHRTLTRVKSVSTPPLLFVLLTISTIMAALTVPFGDRVVILGTSFWLSHDTQVGRDWLVVSLFLVGFIAGVCMLAMMTWLLLFRMKEIKECWDLHVRIRYYFGLSVIGTAVNLSLGINGLVFVFVNPDGRL-LAWSWIFRWVHMVLDTIVLYGVLREREMDERGDDDRSLGVTSGQPAAG 1136
            SG +  L L+ E +MVS C+   +L GLIKT+ F+ +  +NM A TNL IC+NLALIV SHRT+TRVK+VS+P +LF++L +S  +AA TVP  +  V+LGT FW ++   V  D++++S++++ F+ G+CML ++ WL +FRM EIKECW  H RIRYYF L++ GTAVNL LGI G  +VF +    L   WSW+FR++H+  DT+VLYG LRE  +DER + DRS     G  A+G
Sbjct:    9 SGTLVCLALMTEDVMVSACYAATNLVGLIKTINFVMMTSSNMLAATNLGICINLALIVSSHRTMTRVKTVSSPRVLFIMLLVSASLAAATVPLWETTVVLGTHFWFTNSDPVKNDFIIMSIYIIEFLVGICMLVIVFWLAMFRMTEIKECWRFHSRIRYYFCLTLFGTAVNLGLGICGAAYVFGDRKEPLPQIWSWLFRYIHISFDTLVLYGALREGSIDERAEADRSSQDGHGHNASG 247

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BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 2.200e-57
Identity = 105/200 (52.50%), Postives = 140/200 (70.00%), Query Frame = 3

Query:  465 MVSVCWTQKSLEGLIKTLKFLELVGTNMFALTNLAICVNLALIVLSHRTLTRVKSVSTPPLLFVLLTISTIMAALTVPFGDRVVILGTSFWLSHDTQVGRDWLVVSLFLVGFIAGVCMLAMMTWLLLFRMKEIKECWDLHVRIRYYFGLSVIGTAVNLSLGINGLVFVFVNPDGRLL-AWSWIFRWVHMVLDTIVLYGVL 1061
            MV VCW   ++ G +K LKFLELV +NM A+TNLAIC NLAL+++SHRTL RVKS S+P L+F+ L +S  +A    PF    V+ GT F + ++ Q   DWL VS F + F+ G+CM  ++ WLLLFR+ E+KECW +H RIRYYFGL++IGT VNL+LG+ G ++V    +  LL   +W FR +H+ LDT VLYGVL
Sbjct:    1 MVLVCWAGSNVTGFVKALKFLELVASNMLAITNLAICANLALVIMSHRTLARVKSFSSPSLVFLSLAVSIAVAVAAAPFWQTTVVSGTGFAVRNEDQRSGDWLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFRHIHIALDTFVLYGVL 200

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BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot
Match: D8LNN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN2_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 1.790e-54
Identity = 96/174 (55.17%), Postives = 132/174 (75.86%), Query Frame = 3

Query:  465 MVSVCWTQKSLEGLIKTLKFLELVGTNMFALTNLAICVNLALIVLSHRTLTRVKSVSTPPLLFVLLTISTIMAALTVPFGDRVVILGTSFWLSHDTQVGRDWLVVSLFLVGFIAGVCMLAMMTWLLLFRMKEIKECWDLHVRIRYYFGLSVIGTAVNLSLGINGLVFVFVNPDG 986
            M+SVCW  + LEG IK LK+LE   +NM A+TNLAIC+NLAL+V SHRTL+RVKSVSTP L+ + L IS I AA +VPF    V+ GT+FW+++  +   DW++VS+ ++ F+ G+CM  +++WL+ FRM+ IKECW +H RIRYYF L++I TAVNL+LGI+GL +VF +  G
Sbjct:    1 MISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVKSVSTPALVLLFLAISVIAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFVIVSWLMAFRMQAIKECWKIHARIRYYFVLTLIATAVNLALGISGLSYVFRDNAG 174

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BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 5.720e-54
Identity = 104/183 (56.83%), Postives = 134/183 (73.22%), Query Frame = 3

Query:  420 LSGLVFGLGLVVEAMMVSVCWTQKSLEGLIKTLKFLELVGTNMFALTNLAICVNLALIVLSHRTLTRVKSVSTPPLLFVLLTISTIMAALTVPFGDRVVILGTSFWLSHDTQVGRDWLVVSLFLVGFIAGVCMLAMMTWLLLFRMKEIKECWDLHVRIRYYFGLSVIGTAVNLSLGINGLVFV 968
            LSGL+  L  + EA MVSVCW   SL  LIKTLKF EL  +NM A+TNLAICVNLALIV+SHRTL+RV+S STP L+ V L +S  +AA++VPF   +V+ GT+FW+    Q   DW+VV+ F V F  G+CML ++ WL++FR  EIK+ W +H RIRYYFGL++I T VNL+LGI G ++V
Sbjct:   84 LSGLLHQLVFMTEATMVSVCWAGDSLTKLIKTLKFFELAASNMLAITNLAICVNLALIVMSHRTLSRVRSASTPALILVFLALSLGVAAISVPFWTEMVVSGTAFWVQTHEQAAHDWIVVAGFFVEFFVGICMLVIVVWLVIFRRTEIKQSWKMHARIRYYFGLTLIATGVNLALGICGTIYV 266

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BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 7.220e-54
Identity = 106/224 (47.32%), Postives = 152/224 (67.86%), Query Frame = 3

Query:  465 MVSVCWTQKSLEGLIKTLKFLELVGTNMFALTNLAICVNLALIVLSHRTLTRVKSVSTPPLLFVLLTISTIMAALTVPFGDRVVILGTSFWLSHDTQVGRDWLVVSLFLVGFIAGVCMLAMMTWLLLFRMKEIKECWDLHVRIRYYFGLSVIGTAVNLSLGINGLVFVFVNPDGRLLA-WSWIFRWVHMVLDTIVLYGVLREREMDERGDDDRSLGVTSGQPAA 1133
            M+SVCW  ++L   IKTLKFLEL  +NM A+TNLAICVNL+LIV+S R  + VKS+ST  L+ + L +S  +AA+ VPF    V+ GT FW   + +   +++++S F+V F+ G+CM  +++WLLLFRM EIKECW +H  +RYYFGL+++GT  NL+LG+ G ++V  +    LL  +SW FR V + LDTIVL+ VL  + +DER +   + G +   P A
Sbjct:    1 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVKSISTHKLVLLFLALSAGLAAIAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDERAETPPTDGASPAPPPA 224

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BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot
Match: A0A6H5KRY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY2_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 5.880e-48
Identity = 95/175 (54.29%), Postives = 123/175 (70.29%), Query Frame = 3

Query:  465 MVSVCWTQKSLEGLIKTLKFLELVGTNMFALTNLAICVNLALIVLSHRTLTRVKSVSTPPLLFVLLTISTIMAALTVPFGDRVVILGTSFWLSHDTQVGRDWLVVSLFLVGFIAGVCMLAMMTWLLLFRMKEIKECWDLHVRIRYYFGLSVIGTAVNLSLGINGLVFVFVNPDGR 989
            M+SVCW   +L  LIK LKFLEL   NM A+TNLAICVNLAL+V+SHRTL+RV S+S+P ++++ L ++   AA  VP    +++ GT F    + +   DW VVS FL  FI G+CM+A++ WLLLFRMKEIKECW +H RIRYYFGL++I T VNL LGI G V++      R
Sbjct:    1 MISVCWAGGNLSNLIKFLKFLELASANMLAVTNLAICVNLALVVMSHRTLSRVSSLSSPRVIWLSLVLAVGGAAAAVPSWKTIILTGTYFSPYSEDKQDLDWSVVSRFLFEFIVGICMIAIVAWLLLFRMKEIKECWKVHTRIRYYFGLTLIATGVNLVLGIFGTVYIVGEGQRR 175

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BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 4.230e-45
Identity = 90/177 (50.85%), Postives = 121/177 (68.36%), Query Frame = 3

Query:  456 EAMMVSVCWTQKSLEGLIKTLKFLELVGTNMFALTNLAICVNLALIVLSHRTLTR-VKSVSTPPLLFVLLTISTIMAALTVPFGDRVVILGTSFWLSHDTQVGRDWLVVSLFLVGFIAGVCMLAMMTWLLLFRMKEIKECWDLHVRIRYYFGLSVIGTAVNLSLGINGLVFVFVNPD 983
            +A M+SVCWT  +L  LIKT KFLEL   NM A+TNLAIC+NLAL+V+SH      V S+S+P L+ V L IS   AA   PF + +++ GT F+   + Q G DW+ +S F + F  G+CM  ++ WLLLFRM EIKECW +H RIRYYFGL++I T VNL LGI G++++  + +
Sbjct:    2 QATMISVCWTGANLIKLIKTFKFLELASVNMLAMTNLAICMNLALVVMSHGDQQPGVNSLSSPLLIVVSLVISIGAAAAAAPFWEFIILSGTGFFPETENQRGSDWITISRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKMHARIRYYFGLTLIATGVNLILGICGVIYLIGDRE 178

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig8154.17149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
D7FTK5_ECTSI	5.510e-72	57.64	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FTK4_ECTSI	3.300e-69	54.47	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K8K6_9PHAE	8.060e-67	54.05	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JWL8_9PHAE	4.070e-65	50.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNN1_ECTSI	2.200e-57	52.50	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D8LNN2_ECTSI	1.790e-54	55.17	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LNM4_ECTSI	5.720e-54	56.83	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LNP0_ECTSI	7.220e-54	47.32	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5KRY2_9PHAE	5.880e-48	54.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNM5_ECTSI	4.230e-45	50.85	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig8154	contig	L-elsbetiae_contig8154:1850..8118 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Exons	4
Model size	2830
Cds size	834
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig8154.17149.1	prot_L-elsbetiae_contig8154.17149.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig8154 2233..6505 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816899.8178895-UTR-L-elsbetiae_contig8154:1849..2232	1622816899.8178895-UTR-L-elsbetiae_contig8154:1849..2232	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig8154 1850..2232 +
1691683897.601784-UTR-L-elsbetiae_contig8154:1849..2232	1691683897.601784-UTR-L-elsbetiae_contig8154:1849..2232	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig8154 1850..2232 +
1622816899.8807962-UTR-L-elsbetiae_contig8154:6505..8118	1622816899.8807962-UTR-L-elsbetiae_contig8154:6505..8118	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig8154 6506..8118 +
1691683897.6661575-UTR-L-elsbetiae_contig8154:6505..8118	1691683897.6661575-UTR-L-elsbetiae_contig8154:6505..8118	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig8154 6506..8118 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816899.828392-CDS-L-elsbetiae_contig8154:2232..2448	1622816899.828392-CDS-L-elsbetiae_contig8154:2232..2448	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8154 2233..2448 +
1691683897.6141024-CDS-L-elsbetiae_contig8154:2232..2448	1691683897.6141024-CDS-L-elsbetiae_contig8154:2232..2448	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8154 2233..2448 +
1622816899.8423858-CDS-L-elsbetiae_contig8154:3614..3770	1622816899.8423858-CDS-L-elsbetiae_contig8154:3614..3770	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8154 3615..3770 +
1691683897.6315632-CDS-L-elsbetiae_contig8154:3614..3770	1691683897.6315632-CDS-L-elsbetiae_contig8154:3614..3770	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8154 3615..3770 +
1622816899.8557572-CDS-L-elsbetiae_contig8154:5164..5391	1622816899.8557572-CDS-L-elsbetiae_contig8154:5164..5391	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8154 5165..5391 +
1691683897.643958-CDS-L-elsbetiae_contig8154:5164..5391	1691683897.643958-CDS-L-elsbetiae_contig8154:5164..5391	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8154 5165..5391 +
1622816899.8683438-CDS-L-elsbetiae_contig8154:6270..6505	1622816899.8683438-CDS-L-elsbetiae_contig8154:6270..6505	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8154 6271..6505 +
1691683897.6552527-CDS-L-elsbetiae_contig8154:6270..6505	1691683897.6552527-CDS-L-elsbetiae_contig8154:6270..6505	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig8154 6271..6505 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig8154:1850..8118+
coding sequence from alignment at L-elsbetiae_contig8154:1850..8118+

protein sequence of mRNA_L-elsbetiae_contig8154.17149.1

>prot_L-elsbetiae_contig8154.17149.1 ID=prot_L-elsbetiae_contig8154.17149.1|Name=mRNA_L-elsbetiae_contig8154.17149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=278bp
MTEPAVTLRILVLSGLVFGLGLVVEAMMVSVCWTQKSLEGLIKTLKFLEL
VGTNMFALTNLAICVNLALIVLSHRTLTRVKSVSTPPLLFVLLTISTIMA
ALTVPFGDRVVILGTSFWLSHDTQVGRDWLVVSLFLVGFIAGVCMLAMMT
WLLLFRMKEIKECWDLHVRIRYYFGLSVIGTAVNLSLGINGLVFVFVNPD
GRLLAWSWIFRWVHMVLDTIVLYGVLREREMDERGDDDRSLGVTSGQPAA
GRSGRGGSGATNNSTGKSASSPAPPRF*

mRNA from alignment at L-elsbetiae_contig8154:1850..8118+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig8154.17149.1 ID=mRNA_L-elsbetiae_contig8154.17149.1|Name=mRNA_L-elsbetiae_contig8154.17149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6269bp|location=Sequence derived from alignment at L-elsbetiae_contig8154:1850..8118+ (Laminarionema elsbetiae ELsaHSoW15)
GCACAAAGAAAAAAAAACTGAAAAAAAAATTGTTTTTTTGGAAAGAAAAA
GGGATGTTTGAGGCAGAAATCGAACTCCGGGCGCAGTCACGTACCGCCAG
CTCCATTTTTTCTGCAATGTTTCCAAATCCGACTTATATTGCGGATCAGA
GAGTATTTATTATAGAGACTACTGCTGTGTGATGTGTGTGCATAGAACAG
CCCCGCTCGCCGCTGGGTGAGCGAACCAGCAGCTGCTTCTTGCGCAGCGT
TTCCCTACTGGTCTGGTACGCTACATACACAGATCGCGGCTGCAGGGAAT
CATTTTCGGGCAGTTTCAAGTTTGCCTAATTCCAAAAATCGTTGTCCCCC
CTTTCCCCTTCTCTAACCTTGGCGACCGCAACCATGACGGAACCGGCTGT
GACACTACGCATACTTGTGCTCAGCGGATTGGTGTTCGGGTTGGGCTTGG
TGGTGGAAGCTATGATGGTCAGCGTTTGCTGGACGCAAAAATCGTTGGAG
GGCCTGATCAAGACATTGAAATTTTTGGAGCTGGTGGGGACTAACATGTT
TGCTCTCACGAACCTCGCCATCTGCGTCAACCTTGCCCTCATCGTCCTGG
TGAGCAACGAAAGACCAACAGTACCTATTGGGTCCGCCATTTGCACCCAC
CCTTGACCAACCCCCTTAATGCATGCTGAAATGGACCGACGTACGACATT
AGTCTAGCTGTACAGTATTCAGGGAAGGCCTAGCTACATAGATACCTATC
TTAATTGTGTGCTGCTTTATTGGACTTTATTGGACTGAGACTTGCCACGC
AATTGAGTCCAGTCTTATTTCTTGGTCACAGCCTTAGTCAACGCGAGTGC
TGTCCACGCGATTTGCGGTGTTTTGGGTATTTTCATTTGCCGGCGTGATA
TGTTTTTCTTACACGGTAGACTAGTCTATACTGCCTCGCGAAACCTCCAT
CGTTAACTGCTCTGCCACGAGCTCTCGCGCTTTGTTGGAGTACAAGGGCC
GTGCGTAGTCTACATATGCATGTACACGCTGGATGCTGAATCTGCTTTTG
ACGAACGTTAATAAAAGCACGATTACCACTCACTCCCTCCGTTATGATCA
CCTTCTTCTGTAAGATATAGCGACGCTTGACACCACCGCCCAACTTTTTC
TGCTGCTGCTGTGGGACGCAAAACCGCTCTCCGCGTGGGCTTATACATAC
TCCGGAGTAAACTATTCTACCGTAGGTGACATAAGATAAGATACCCCCTG
GACCGATTTTCAAAGCTCAAGAACTCCTCAGCAAGCAGATCGTCAGTTCC
GAAAAGAGCGGCGTTGGAAAGATCTCGTTGAAAGCTTTCCGAAAATGTGG
CGTTTGTGGTTAGAATCGTATTCGTTGCGGAGTAACCAAGCTTTCAATAT
CGGTCCAGGGGGTGTCTTATCTTATGTCACCTACGGCGGTACCTACACTT
CGTGCACACTTAAGTGTACTGTACCGGGCATTACATGGGATGTGCGCTTT
GGAACGTGCAGATGCAACTCGAACGGCAGTGGTGTGGTGCCCTCTTCTTC
CTCTTGATGCCCACCACGAAGCGTCACCATCACACCTATCTATGTATCTA
GAGTCTACACACGCAAACAGTCACATCTCCGCCGTATTGTTTACTCTACT
CTTAGATACTCCTTTTTCCCGCCGCGCGGTTCATTTCGGTACTACCCATG
TGCTGCCTGTTGCCTACTGACGGTGCCTCCCTGGGGCGATGACGGCATGA
TATGACCGTATCCAGTCTCATCGGACGCTGACCCGCGTCAAGAGCGTCAG
CACGCCCCCGCTGCTGTTTGTGCTCCTGACGATCTCCACGATCATGGCGG
CTCTCACGGTTCCGTTTGGGGACAGAGTCGTCATACTCGGCACTAGCTTT
TGGTTGTCACACGATACCCAGGTATGGATGGATGGATGCACTGCTTTTTT
ATAATGAATGTGTACAAATAAATGTCAGCAGTCTACGAAGAAGCCGTTCC
AGAGGGATTAGATATTGCTGTTGTAGGCATACTATGTACATTTGTATTGC
GCTGTGTTCACGCGTGTCGTAGCATGTCATGTGAAGCTAGCCAGCTCTTC
GTATTGACTCTGTCCTCGGGCAGCGCACCGCCTACTGTTGAACGCATGCG
TGTACCGTAGGTGACACAAGATACCACACCCCCTGGACCGATTTTTAGAG
CTCCGTTACTCCGTAACGAAGAAGGTGCCGGCACCAAATGAATCATTTTC
GGACAGCCCTCGGCTAGATCTTTCCAACGCACCCCCTTTGGGCATTGACA
CTCTTCTTGCTGGAGAGGAATCGAGCTTTGAAAATCTGTCCAGGGGGTGT
GGTATCTTGTGTCACCTACGGTAAGCCCCCCTCGTCTGGTAGAGTTTAGA
CACACACTTTCAAGTCCCAGAAAGGTGAACGACAGATTATGACGAAGCTT
CCGAGTTTTTTTATTATTGTGATCTAGATTTCGGCGTTCAACGATGCATA
CCAGCATCAAAGGCAAGCGCGACTGTCTTCGTTTCAAGTCTCGTGCTTGT
TCGTTTTTTTTTTCTATTTTTTTTCTATTTTTTTTTTCCAGTGCTCGATA
AGCTAGCTCCCTGTCACGAGGACATCTTGCCAGAGTACTGAACCGTGGTG
ACGCAGAAGGGTTCCTTTCCCAAGGCCCCCACTCCCCCCGTCTGCGGTGC
TTGCCTTTATTTTTTTGTCGCGAGACGTGTTCAGTCGTCCCTTTCCCTCG
TCGACGGTGAGGTCGAAGTTCGTTTTATCCTTCCCCTATCTATGTAGTGG
GCGTTCGGGGATGGAGGGGGTCACAGGCTTGTCCGCTACTACGTACGTGA
TCGTTTCAAGAAACGCCATATTTTGTGCCGTGGTTGGGAGGCATATGTTG
TGTGCCTATGTAGCCTCGCCATATGAACGAACTGCTGCACGTGGCCGACT
TTTTAAGGGTCTTCGCGGCTAAGCTGCACGCAGAGAAAAGGACGGCTGAA
CCCTTCTCGCGACAAAAATCTTAGGCAAACACGGCAGACGGGGGAAGTGG
GGGCCTTGTGGAAAGGGACCCTTCTGTGTGACCACGGTTCAGTACTCTGG
CAAGATGTCCTCGTGACAGGGAGCTAGCTCATCGAGCACTGGAAATAAAT
GTGAAGAAGAACAAACAACAGTACATGTCGCTCTCCACGCTTTCCTTGCC
TCGACACACGTCATGCCGTGACTTCCTCATCAAAATCTTAGAGTGTCTCT
TGACTATTTATCTCTCTGTCCTACACCTGCGTACCCCCTCTTGCGGTCAT
GGCCAATCAATGCAGGTCGGCCGGGACTGGCTCGTAGTCTCACTGTTCCT
GGTCGGCTTCATCGCCGGGGTCTGCATGCTCGCCATGATGACCTGGCTGC
TGCTGTTTCGGATGAAGGAGATCAAGGAGTGCTGGGATCTACACGTCCGC
ATTCGCTATTACTTCGGCCTCTCAGTTATTGGCACGGCCGTGAACCTGAG
CCTTGGCATCAACGGCTTGGTCTTCGTCTTCGTGAATCCGGAGTAAGTGG
ACGGGCCAGGTGTGCTGTTCTGTTTATTTTAGTCGGGAATTGTGGAGAGG
GGCAGCACAAGAGAAGATGCGAAAGATAACCGTGGTCTACACAGTGCTGC
TATCGTGGGTTTAGGGATTTGATAAAACCTATTTCCTTGTATGTGCATAT
TTGTTCGCGGCACTAGAGAGCTCCAGAGCGAAGTTTTTGGCTTTCGAAGA
TCGAGTTCGTGGGAAATGCCGAAGAACCAAAAAGCCCATCGCTTGTTGTC
GAACCCTGAGTAAGAGGTCGCCGGTTTTTCGTGATTCAGGGTGCATGATG
GCTCGCTCCTTCTCCCGAGAACAGCCTCAGATATGATGCAAAGCATCTCC
TTCTCTCAGAATACAGAATGCAGAACGGCCGTGCTGGCGCGTGCTCGACT
TTCCCAGTGGCTATATCTATCTATCGCATTGACTGGCATCGTCTCGGGAA
AGCAAGCAAGCCTGCCTTTAACCTGCTTGGCCCTTCCTCGGAAGCAAAAC
AAGTTGTTAAAGAAGACTACTTGTTCGGCCGGCATGTACATGTATGTAGA
AGTATGTATGTATGTATGTATGTATGTGGTTGGAGGCGAAAAGGCACGCG
AAGGCACACCACTGACGAAAGCCATACATATAAGAAGTGGCGTTCTCTTG
CTGTGCCTGTGTGCTGCTTCCAGCATGCGGGGGGGGGGGGCAGTAAAAGA
GTGTGCTCGCCGGCGCGTAGACGCAACGCCAAGATGATGTGGCGCGCTGG
AACTCTTGACCCATGCACTGCTTCTGGTGTTCGTTAATCCCCGCCGTGTT
TGCCCCCGCCCCCGCTGTACGTGTCCCGCTCCGCTCGCCGCGCGTATTCG
ACCACGATGACGTCACGAAAGTGGGCGTCTACTGGCCTGGAGCTGGATCT
TCAGGTGGGTCCACATGGTTTTGGACACCATCGTCTTGTACGGCGTGCTC
CGAGAGAGGGAAATGGACGAACGCGGCGACGACGACCGGTCGCTTGGTGT
GACTTCCGGACAACCCGCGGCCGGGAGGAGCGGGCGTGGAGGATCTGGAG
CGACCAACAACAGCACGGGCAAGTCCGCGAGTTCGCCGGCCCCCCCACGG
TTTTAGCCGGCGTTCGCTTTCGCATCACATTTCACCCGGGTCACTATAGA
GAGTCTGGCCCCACCGACGTGTGCTCACTGTTATTCAGGGCTAAATACGC
GTTGAGCAGCCTGCTGCTGCCTGTAATGTCCAGCTTTACGGGAAAAACTA
GCCCAGGAGAACCGCCCCCGGCTTCGGTGGTACAACCCCGTATTGGGGGT
GGTATTTCGGGTATTTCATGAAACGTACGGGTTGATACCACGCGAAGGTG
TGGAAGGGAGACGAGTGCTTGGATGGTATTTGCGCGAATAGGACATACTA
CTTTGTTTGGAAGGGAGGTATGTATGGATGTGCTTGGATGGTATTTGCGC
GCGAATGGGATATACTACTTCGCTCGCAAGAGGACGTTGTGAGCGATAGC
TCTTGCTGAGGGTAATTCGTGGGGTTGGCTATCGTAACCATTGTGAAATC
GCAAGTGAGCAGCCTCCATATGGGGGGGGCGAAAGAGAAGCATTGGACGC
CTACATACGATGCTTCGTGGTGAATGTTGGTGTAGGTGTTTTTCCGTGGT
GATGTTTAGGTGTTCGGGTGCGGGTTCAACATCGTCTGTAGTGCAGGATT
TCACAGCAATAAATCTCTGGTTTTATCTTCACGAGGGGGGGTGTAAGGCG
GTGTCATTGTCAGTTGTTCGTTGAGTATAGGGAGGTAGGTGAGCGAAATA
CGACCACGTGCCAGCCAATACTCGTAAGGCTTGCCAGGATAGGTGTACGG
CCCTTGTGTGCATGTCAGGTGGGGTCTTGGTGTCAGAGTTTCGTCCTGTT
TAGGTATATATTTTTACTCTTCTTTATGTTTAGACTACTTTTTTTTGTGG
CGGTACACTACTCGCATTGGGTGTTGTCGAGTCTTCGTGGTTGTTTCACC
CGTCTCTTTGCTGCCTGCCACTGTATGAAGTTAGTTTAAAGTAGGCGAAT
TTTGGAATTTGTTGGTACTTTGTATGCATGCATGTATCTAACCTATAGTC
GAGTTTCATCGTGCGGATAGATGCGACTGGTGAGTATGCACGGGGATTAA
TCGGAGAAGGGGGATGTTTTGTCGGTGAGAGGTACCGAACACGCACGGAC
GTACGTACACGTGGCTCTTTGGCGGTTACAAAGTACGGAACATTGAGGTT
GTTGTTTTACGCGCGGCGTCGATACAGTGAACTCCTATACTTGTATACAC
CAGGAGCTCGTACAGCGACCTAAGTAGGCCTAAATCCGGTACACCAACCT
AGCCTGGGGTGTGGGTTAGGGTATAGGGTGGTTGGGGTGTGGGTTAGGCC
TACAAGCGCCGTGGTGTAGCGAGAGGGCCGGAAACCTAGCGTAGGCCTTG
TTTTCGCGTCTACCTCCAAGTGCAACCTAGGTTTATTACTCCGCTGGTGT
AAAAGCTATACACCAGGGCTTGTGGATGCACGCGAGCCGGTTGTTTTTAA
TTGGTATCTAGGCTAGATCTGTTACGAATTGCATTTTTCCTTAAGGGGGT
GCTGACAACGGTGGTTAAGCAGTTTCATACTAAAATCAAGATAATAAGGC
CGAGTATAACGAAAACCAACTTCCCGTCGAAAGTTAAGCAGTTTCGGGCA
TGGAATCACTAGAGCTAAC

Coding sequence (CDS) from alignment at L-elsbetiae_contig8154:1850..8118+

>mRNA_L-elsbetiae_contig8154.17149.1 ID=mRNA_L-elsbetiae_contig8154.17149.1|Name=mRNA_L-elsbetiae_contig8154.17149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1668bp|location=Sequence derived from alignment at L-elsbetiae_contig8154:1850..8118+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGAACCGGCTGTGACACTACGCATACTTGTGCTCAGCGGATTGGT
GTTCGGGTTGGGCTTGGTGGTGGAAGCTATGATGGTCAGCGTTTGCTGGA
CGCAAAAATCGTTGGAGGGCCTGATCAAGACATTGAAATTTTTGGAGCTG
GTGGGGACTAACATGTTTGCTCTCACGAACCTCGCCATCTGCGTCAACCT
TGCCCTCATCGTCCTGATGACGGAACCGGCTGTGACACTACGCATACTTG
TGCTCAGCGGATTGGTGTTCGGGTTGGGCTTGGTGGTGGAAGCTATGATG
GTCAGCGTTTGCTGGACGCAAAAATCGTTGGAGGGCCTGATCAAGACATT
GAAATTTTTGGAGCTGGTGGGGACTAACATGTTTGCTCTCACGAACCTCG
CCATCTGCGTCAACCTTGCCCTCATCGTCCTGTCTCATCGGACGCTGACC
CGCGTCAAGAGCGTCAGCACGCCCCCGCTGCTGTTTGTGCTCCTGACGAT
CTCCACGATCATGGCGGCTCTCACGGTTCCGTTTGGGGACAGAGTCGTCA
TACTCGGCACTAGCTTTTGGTTGTCACACGATACCCAGTCTCATCGGACG
CTGACCCGCGTCAAGAGCGTCAGCACGCCCCCGCTGCTGTTTGTGCTCCT
GACGATCTCCACGATCATGGCGGCTCTCACGGTTCCGTTTGGGGACAGAG
TCGTCATACTCGGCACTAGCTTTTGGTTGTCACACGATACCCAGGTCGGC
CGGGACTGGCTCGTAGTCTCACTGTTCCTGGTCGGCTTCATCGCCGGGGT
CTGCATGCTCGCCATGATGACCTGGCTGCTGCTGTTTCGGATGAAGGAGA
TCAAGGAGTGCTGGGATCTACACGTCCGCATTCGCTATTACTTCGGCCTC
TCAGTTATTGGCACGGCCGTGAACCTGAGCCTTGGCATCAACGGCTTGGT
CTTCGTCTTCGTGAATCCGGAGTCGGCCGGGACTGGCTCGTAGTCTCACT
GTTCCTGGTCGGCTTCATCGCCGGGGTCTGCATGCTCGCCATGATGACCT
GGCTGCTGCTGTTTCGGATGAAGGAGATCAAGGAGTGCTGGGATCTACAC
GTCCGCATTCGCTATTACTTCGGCCTCTCAGTTATTGGCACGGCCGTGAA
CCTGAGCCTTGGCATCAACGGCTTGGTCTTCGTCTTCGTGAATCCGGATG
GGCGTCTACTGGCCTGGAGCTGGATCTTCAGGTGGGTCCACATGGTTTTG
GACACCATCGTCTTGTACGGCGTGCTCCGAGAGAGGGAAATGGACGAACG
CGGCGACGACGACCGGTCGCTTGGTGTGACTTCCGGACAACCCGCGGCCG
GGAGGAGCGGGCGTGGAGGATCTGGAGCGACCAACAACAGCACGGGCAAG
TCCGCGAGTTCGCCGGCCCCCCCACGGTTTTAGTGGGCGTCTACTGGCCT
GGAGCTGGATCTTCAGGTGGGTCCACATGGTTTTGGACACCATCGTCTTG
TACGGCGTGCTCCGAGAGAGGGAAATGGACGAACGCGGCGACGACGACCG
GTCGCTTGGTGTGACTTCCGGACAACCCGCGGCCGGGAGGAGCGGGCGTG
GAGGATCTGGAGCGACCAACAACAGCACGGGCAAGTCCGCGAGTTCGCCG
GCCCCCCCACGGTTTTAG