mRNA_L-elsbetiae_contig8147.17145.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8147.17145.1
Unique NamemRNA_L-elsbetiae_contig8147.17145.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8147.17145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8147contigL-elsbetiae_contig8147:5496..6024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size529
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8147.17145.1prot_L-elsbetiae_contig8147.17145.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8147 5563..5994 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816899.236871-UTR-L-elsbetiae_contig8147:5495..55621622816899.236871-UTR-L-elsbetiae_contig8147:5495..5562Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8147 5496..5562 +
1691683897.0967946-UTR-L-elsbetiae_contig8147:5495..55621691683897.0967946-UTR-L-elsbetiae_contig8147:5495..5562Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8147 5496..5562 +
1622816899.2655907-UTR-L-elsbetiae_contig8147:5994..60241622816899.2655907-UTR-L-elsbetiae_contig8147:5994..6024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8147 5995..6024 +
1691683897.1180625-UTR-L-elsbetiae_contig8147:5994..60241691683897.1180625-UTR-L-elsbetiae_contig8147:5994..6024Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8147 5995..6024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816899.252248-CDS-L-elsbetiae_contig8147:5562..59941622816899.252248-CDS-L-elsbetiae_contig8147:5562..5994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8147 5563..5994 +
1691683897.10717-CDS-L-elsbetiae_contig8147:5562..59941691683897.10717-CDS-L-elsbetiae_contig8147:5562..5994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8147 5563..5994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8147.17145.1

>prot_L-elsbetiae_contig8147.17145.1 ID=prot_L-elsbetiae_contig8147.17145.1|Name=mRNA_L-elsbetiae_contig8147.17145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MNQPGHGVCDVAFIRSSHFQHLLRSVPVVPIHSLCTVGDTRYHTPWAGFR
SSIPPQQEECQCRKGWRWKDLVQGCPKMCRLVLATSSLQGNGPLKVGTGG
VVSCVAHGMYAWDLTVLCLSRGLLAAAEFFFSFFFRGVNTVCS*
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mRNA from alignment at L-elsbetiae_contig8147:5496..6024+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8147.17145.1 ID=mRNA_L-elsbetiae_contig8147.17145.1|Name=mRNA_L-elsbetiae_contig8147.17145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=529bp|location=Sequence derived from alignment at L-elsbetiae_contig8147:5496..6024+ (Laminarionema elsbetiae ELsaHSoW15)
TGTTGCTCAAAAAGTACACCTTGGTTATTCGTGCATTATTGAAAAACTGG
TGGCACCCCGTGCATGCATGAACCAGCCGGGGCACGGTGTGTGCGATGTT
GCGTTCATTCGGAGCAGCCACTTTCAGCACCTGTTGAGAAGCGTACCTGT
GGTACCCATACATAGCCTATGTACCGTAGGTGACACAAGATACCACACCC
CCTGGGCAGGTTTTCGAAGCTCGATTCCTCCCCAGCAAGAAGAGTGCCAG
TGCCGAAAGGGGTGGCGCTGGAAAGATCTAGTCCAGGGCTGTCCGAAAAT
GTGCCGTTTGGTGCTGGCAACCTCTTCGTTACAGGGTAATGGACCTCTAA
AAGTCGGTACAGGGGGTGTGGTATCTTGTGTAGCCCACGGTATGTATGCA
TGGGACTTAACTGTGTTGTGTTTGTCGCGGGGTTTGCTTGCCGCCGCAGA
ATTTTTTTTTTCTTTTTTCTTTCGTGGTGTCAACACGGTATGTAGCTAGT
CACTGTTTGTTTTGCGCACGAAGGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8147:5496..6024+

>mRNA_L-elsbetiae_contig8147.17145.1 ID=mRNA_L-elsbetiae_contig8147.17145.1|Name=mRNA_L-elsbetiae_contig8147.17145.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig8147:5496..6024+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCAGCCGGGGCACGGTGTGTGCGATGTTGCGTTCATTCGGAGCAG
CCACTTTCAGCACCTGTTGAGAAGCGTACCTGTGGTACCCATACATAGCC
TATGTACCGTAGGTGACACAAGATACCACACCCCCTGGGCAGGTTTTCGA
AGCTCGATTCCTCCCCAGCAAGAAGAGTGCCAGTGCCGAAAGGGGTGGCG
CTGGAAAGATCTAGTCCAGGGCTGTCCGAAAATGTGCCGTTTGGTGCTGG
CAACCTCTTCGTTACAGGGTAATGGACCTCTAAAAGTCGGTACAGGGGGT
GTGGTATCTTGTGTAGCCCACGGTATGTATGCATGGGACTTAACTGTGTT
GTGTTTGTCGCGGGGTTTGCTTGCCGCCGCAGAATTTTTTTTTTCTTTTT
TCTTTCGTGGTGTCAACACGGTATGTAGCTAGATGAACCAGCCGGGGCAC
GGTGTGTGCGATGTTGCGTTCATTCGGAGCAGCCACTTTCAGCACCTGTT
GAGAAGCGTACCTGTGGTACCCATACATAGCCTATGTACCGTAGGTGACA
CAAGATACCACACCCCCTGGGCAGGTTTTCGAAGCTCGATTCCTCCCCAG
CAAGAAGAGTGCCAGTGCCGAAAGGGGTGGCGCTGGAAAGATCTAGTCCA
GGGCTGTCCGAAAATGTGCCGTTTGGTGCTGGCAACCTCTTCGTTACAGG
GTAATGGACCTCTAAAAGTCGGTACAGGGGGTGTGGTATCTTGTGTAGCC
CACGGTATGTATGCATGGGACTTAACTGTGTTGTGTTTGTCGCGGGGTTT
GCTTGCCGCCGCAGAATTTTTTTTTTCTTTTTTCTTTCGTGGTGTCAACA
CGGTATGTAGCTAG
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