mRNA_L-elsbetiae_contig8146.17144.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8146.17144.1
Unique NamemRNA_L-elsbetiae_contig8146.17144.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8146.17144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8146contigL-elsbetiae_contig8146:744..1238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size355
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8146.17144.1prot_L-elsbetiae_contig8146.17144.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8146 825..1192 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816899.1725729-UTR-L-elsbetiae_contig8146:743..8241622816899.1725729-UTR-L-elsbetiae_contig8146:743..824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8146 744..824 -
1691683897.0589197-UTR-L-elsbetiae_contig8146:743..8241691683897.0589197-UTR-L-elsbetiae_contig8146:743..824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8146 744..824 -
1622816899.2062006-UTR-L-elsbetiae_contig8146:1192..12381622816899.2062006-UTR-L-elsbetiae_contig8146:1192..1238Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8146 1193..1238 -
1691683897.0837157-UTR-L-elsbetiae_contig8146:1192..12381691683897.0837157-UTR-L-elsbetiae_contig8146:1192..1238Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8146 1193..1238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816899.1827364-CDS-L-elsbetiae_contig8146:824..10501622816899.1827364-CDS-L-elsbetiae_contig8146:824..1050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8146 825..1050 -
1691683897.0676396-CDS-L-elsbetiae_contig8146:824..10501691683897.0676396-CDS-L-elsbetiae_contig8146:824..1050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8146 825..1050 -
1622816899.194631-CDS-L-elsbetiae_contig8146:1190..11921622816899.194631-CDS-L-elsbetiae_contig8146:1190..1192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8146 1191..1192 -
1691683897.0754404-CDS-L-elsbetiae_contig8146:1190..11921691683897.0754404-CDS-L-elsbetiae_contig8146:1190..1192Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8146 1191..1192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8146.17144.1

>prot_L-elsbetiae_contig8146.17144.1 ID=prot_L-elsbetiae_contig8146.17144.1|Name=mRNA_L-elsbetiae_contig8146.17144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
MGGGGGRYLYPVWVPGTRTHTRQGERSLPVKKHRSSLGSPRALDRNHHSG
WELHTYVEHGNTYSYMLEIIMVLVD*
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mRNA from alignment at L-elsbetiae_contig8146:744..1238-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8146.17144.1 ID=mRNA_L-elsbetiae_contig8146.17144.1|Name=mRNA_L-elsbetiae_contig8146.17144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=495bp|location=Sequence derived from alignment at L-elsbetiae_contig8146:744..1238- (Laminarionema elsbetiae ELsaHSoW15)
GGGGGGCTCACACACGACTGTTATCGGCGAAGATGCACATAGGTACATGT
GTCGGGGGGGGGGGGGGGATCTATACCCTGTTTGGGTCCCAGGAACCAAC
ACACACACCCNNNNNNNNNNGGGCCGGGGGGTTGGGGGGCGGGTGTGTCC
CGCGGGAGGGTTGCACGTGGACCCGCGGGTGGGGGGAGGGGGGGGGGGGG
GGGGAGATATCTATACCCTGTTTGGGTTCCAGGAACACGCACACACACCC
GACAAGGTGAACGAAGTTTACCAGTAAAGAAACATCGCTCAAGCCTGGGA
TCTCCTCGTGCCCTCGACCGGAATCATCATAGCGGATGGGAACTACATAC
ATACGTAGAGCATGGAAATACATACTCCTACATGCTCGAAATAATCATGG
TACTTGTGGACTAGACTAGAAAGCTAATGTGAGAAACAACAACAACAACA
ACAACAACAACGCAAAGGGCGAAAAGGCACGAAACTCCCTTCCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8146:744..1238-

>mRNA_L-elsbetiae_contig8146.17144.1 ID=mRNA_L-elsbetiae_contig8146.17144.1|Name=mRNA_L-elsbetiae_contig8146.17144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig8146:744..1238- (Laminarionema elsbetiae ELsaHSoW15)
ATATGGGGGGGGGGGGGGGGAGATATCTATACCCTGTTTGGGTTCCAGGA
ACACGCACACACACCCGACAAGGTGAACGAAGTTTACCAGTAAAGAAACA
TCGCTCAAGCCTGGGATCTCCTCGTGCCCTCGACCGGAATCATCATAGCG
GATGGGAACTACATACATACGTAGAGCATGGAAATACATACTCCTACATG
CTCGAAATAATCATGGTACTTGTGGACTAGGGGGGGGGGGGGGGGGAGAT
ATCTATACCCTGTTTGGGTTCCAGGAACACGCACACACACCCGACAAGGT
GAACGAAGTTTACCAGTAAAGAAACATCGCTCAAGCCTGGGATCTCCTCG
TGCCCTCGACCGGAATCATCATAGCGGATGGGAACTACATACATACGTAG
AGCATGGAAATACATACTCCTACATGCTCGAAATAATCATGGTACTTGTG
GACTAG
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