mRNA_L-elsbetiae_contig8141.17139.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8141.17139.1
Unique NamemRNA_L-elsbetiae_contig8141.17139.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig8141.17139.1 vs. uniprot
Match: D7FP44_ECTSI (Sirohydrochlorin ferrochelatase, putative chloroplast n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP44_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.850e-50
Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 1
Query:    1 QAAHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPELMNAAAKRHPEVPWVVSEPLGLQELMPRVMHAAVSESVEGGAWQRG 276
            +AAHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIP LM AAAKRHP V WVVSEPLGLQELMPRVMHAAVSESV GGAW+ G
Sbjct:  122 EAAHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPALMVAAAKRHPGVGWVVSEPLGLQELMPRVMHAAVSESVAGGAWRHG 213          
BLAST of mRNA_L-elsbetiae_contig8141.17139.1 vs. uniprot
Match: A0A836CEJ2_9STRA (CbiX-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ2_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.980e-37
Identity = 63/92 (68.48%), Postives = 77/92 (83.70%), Query Frame = 1
Query:    1 QAAHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPELMNAAAKRHPEVPWVVSEPLGLQELMPRVMHAAVSESVEGGAWQRG 276
            + AHMELAEP+IE+AFD+CVAAGA+ VVLHPFFLSPGRHV+SDIPEL+ AAA RHP V W VSEPLGL  LMP++M+ AV+ +++   WQ G
Sbjct:   27 EVAHMELAEPTIEQAFDKCVAAGAKAVVLHPFFLSPGRHVSSDIPELLAAAASRHPGVKWKVSEPLGLAPLMPQLMNDAVAAALQEPEWQGG 118          
BLAST of mRNA_L-elsbetiae_contig8141.17139.1 vs. uniprot
Match: A0A7G9NWY9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium zrk34 TaxID=2723666 RepID=A0A7G9NWY9_9BACT)

HSP 1 Score: 101 bits (251), Expect = 3.680e-25
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    7 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPELMNAAAKRHPEVPWVVSEPLGLQELMPRVMHAAV 240
            AHMELAEP+IE+AFDRCV  GA+ VV HPFFL PG+H   DIP L  AAA +HP + W+V+ P+G+ E MP VM+ A+
Sbjct:   47 AHMELAEPTIEQAFDRCVQRGAKVVVCHPFFLLPGKHWNQDIPNLTAAAAGKHPGIRWMVTAPIGMNEKMPLVMNDAI 124          
BLAST of mRNA_L-elsbetiae_contig8141.17139.1 vs. uniprot
Match: A0A5Q4H7Y2_9PLAN (Sirohydrochlorin cobaltochelatase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A5Q4H7Y2_9PLAN)

HSP 1 Score: 100 bits (248), Expect = 1.040e-24
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPELMNAAAKRHPEVPWVVSEPLGLQELMPRVMHAAVSESVE 255
            AHMELAEPSI  AFD CVA GA+ VVLHP+FL PG+H + DIP L   AA +HP++P++V+ PLGL  LM  +M   ++  +E
Sbjct:   46 AHMELAEPSIATAFDHCVARGAEMVVLHPYFLLPGKHWSEDIPALARQAASKHPKIPFMVTAPLGLHPLMAEIMQQRIARCLE 128          
BLAST of mRNA_L-elsbetiae_contig8141.17139.1 vs. uniprot
Match: A0A518BYE9_9BACT (Sirohydrochlorin cobaltochelatase n=1 Tax=Mucisphaera calidilacus TaxID=2527982 RepID=A0A518BYE9_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 3.300e-24
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    7 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPELMNAAAKRHPEVPWVVSEPLGLQELMPRVMHAAV 240
            AHMELAEPSI  AFDRCV  GA +V++ P+FL PG+H   DIP+L   AAKRHP+VP+VV+ P+GL  +M +V+H+ +
Sbjct:   45 AHMELAEPSISTAFDRCVERGATRVLICPYFLLPGKHWDQDIPQLATEAAKRHPDVPFVVTAPIGLHPMMKQVIHSRI 122          
BLAST of mRNA_L-elsbetiae_contig8141.17139.1 vs. uniprot
Match: A0A518DNN6_9BACT (Sirohydrochlorin cobaltochelatase n=1 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518DNN6_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 1.220e-23
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    7 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPELMNAAAKRHPEVPWVVSEPLGLQELMPRVMHAAVSESV 252
            AHMELAEP+++ AFDRC+A GA+++V+HP+FL PG H   DIP L   AA R P+VP+VV+EPLGL  L+ +V+   ++ ++
Sbjct:   44 AHMELAEPTLQTAFDRCIARGAEQIVVHPYFLLPGNHSREDIPRLAAEAAARRPDVPYVVTEPLGLHPLLGQVIRDRIAAAL 125          
BLAST of mRNA_L-elsbetiae_contig8141.17139.1 vs. uniprot
Match: A0A350CGA9_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A350CGA9_9PLAN)

HSP 1 Score: 96.7 bits (239), Expect = 1.480e-23
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    7 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPELMNAAAKRHPEVPWVVSEPLGLQELMPRVMHAAVSESVE 255
            AHMELAEPSI++AFDRCVA GA+++V+ P+FLSPGRH T DIP L+  AA  HPEV W+V+ P GL + + +    AVSE ++
Sbjct:   45 AHMELAEPSIQQAFDRCVARGARRIVVFPWFLSPGRHWTEDIPGLVEQAAAVHPEVQWLVTPPFGLHQGLLQ----AVSERID 123          
BLAST of mRNA_L-elsbetiae_contig8141.17139.1 vs. uniprot
Match: A0A2E0AVX8_9BACT (Sirohydrochlorin cobaltochelatase n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0AVX8_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 1.640e-23
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    7 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPELMNAAAKRHPEVPWVVSEPLGLQELMPRVMHAAVSESVE 255
            AHMELAEP+I +AF+RCVA GA+ V++HP+FL PGRH   DIP L N AAKRH  + ++V+ PLG   LM +++ A + +  E
Sbjct:   21 AHMELAEPTINQAFERCVAQGAEVVIIHPYFLLPGRHWQQDIPRLANEAAKRHSGIRYLVTAPLGAHLLMSQIIQARIEQCTE 103          
BLAST of mRNA_L-elsbetiae_contig8141.17139.1 vs. uniprot
Match: A0A3M2BXR8_9BACT (Cobalamin biosynthesis protein CbiX n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3M2BXR8_9BACT)

HSP 1 Score: 96.7 bits (239), Expect = 2.870e-23
Identity = 48/76 (63.16%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    7 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPELMNAAAKRHPEVPWVVSEPLGLQELMPRVMHA 234
            AHMELAEPSI  AFDRCVA GA++VV+ P+FL PGRH T DIPEL   AA+RHP V ++V+ P+GL  LM  V+ A
Sbjct:   53 AHMELAEPSIATAFDRCVARGARRVVVLPYFLLPGRHWTDDIPELTRRAARRHPGVAYLVAAPIGLHPLMLEVLAA 128          
BLAST of mRNA_L-elsbetiae_contig8141.17139.1 vs. uniprot
Match: A0A6P4DL50_ARADU (sirohydrochlorin ferrochelatase, chloroplastic isoform X1 n=7 Tax=Arachis TaxID=3817 RepID=A0A6P4DL50_ARADU)

HSP 1 Score: 97.1 bits (240), Expect = 5.300e-23
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    7 AHMELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPELMNAAAKRHPEVPWVVSEPLGLQELMPRVMHAAVSESVE 255
            AHMELAEPSI +AF  CV  GAQ+VV+ PFFLSPGRH   DIP L + AAK HP V ++V+ PLGL EL+  VM+  +   ++
Sbjct:   95 AHMELAEPSIRDAFQSCVEQGAQRVVISPFFLSPGRHWNQDIPSLSSEAAKEHPGVSYIVTAPLGLHELLVDVMNDRIKHCLK 177          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8141.17139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP44_ECTSI1.850e-5091.30Sirohydrochlorin ferrochelatase, putative chloropl... [more]
A0A836CEJ2_9STRA5.980e-3768.48CbiX-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7G9NWY9_9BACT3.680e-2560.26Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A5Q4H7Y2_9PLAN1.040e-2455.42Sirohydrochlorin cobaltochelatase n=1 Tax=Planctom... [more]
A0A518BYE9_9BACT3.300e-2457.69Sirohydrochlorin cobaltochelatase n=1 Tax=Mucispha... [more]
A0A518DNN6_9BACT1.220e-2352.44Sirohydrochlorin cobaltochelatase n=1 Tax=Lignipir... [more]
A0A350CGA9_9PLAN1.480e-2357.83Uncharacterized protein n=2 Tax=Planctomycetia Tax... [more]
A0A2E0AVX8_9BACT1.640e-2353.01Sirohydrochlorin cobaltochelatase n=2 Tax=Planctom... [more]
A0A3M2BXR8_9BACT2.870e-2363.16Cobalamin biosynthesis protein CbiX n=1 Tax=Acidob... [more]
A0A6P4DL50_ARADU5.300e-2356.63sirohydrochlorin ferrochelatase, chloroplastic iso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8141contigL-elsbetiae_contig8141:1616..1927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.2
Seed ortholog evalue1.3e-37
Seed eggNOG ortholog2880.D7FP44
KEGG rclassRC01012
KEGG koko:K03794
KEGG ReactionR02864
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004325,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016829,GO:0018130,GO:0019354,GO:0019438,GO:0033013,GO:0033014,GO:0034641,GO:0042168,GO:0042440,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046148,GO:0046156,GO:0046483,GO:0048037,GO:0050896,GO:0051186,GO:0051188,GO:0051266,GO:0051536,GO:0051540,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.sirohydrochlorin cobaltochelatase activity
EggNOG OGs2RXIW@2759,COG2138@1
EC4.99.1.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionsirohydrochlorin ferrochelatase, putative chloroplast precursor
Ec32 orthologEc-10_002430.1
Exons1
Model size312
Cds size300
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.6506898-UTR-L-elsbetiae_contig8141:1615..16271622816898.6506898-UTR-L-elsbetiae_contig8141:1615..1627Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8141 1616..1627 +
1691683896.6742418-UTR-L-elsbetiae_contig8141:1615..16271691683896.6742418-UTR-L-elsbetiae_contig8141:1615..1627Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8141 1616..1627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.665301-CDS-L-elsbetiae_contig8141:1627..19271622816898.665301-CDS-L-elsbetiae_contig8141:1627..1927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8141 1628..1927 +
1691683896.6874957-CDS-L-elsbetiae_contig8141:1627..19271691683896.6874957-CDS-L-elsbetiae_contig8141:1627..1927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8141 1628..1927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8141.17139.1prot_L-elsbetiae_contig8141.17139.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8141 1628..1927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8141.17139.1

>prot_L-elsbetiae_contig8141.17139.1 ID=prot_L-elsbetiae_contig8141.17139.1|Name=mRNA_L-elsbetiae_contig8141.17139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MELAEPSIEEAFDRCVAAGAQKVVLHPFFLSPGRHVTSDIPELMNAAAKR
HPEVPWVVSEPLGLQELMPRVMHAAVSESVEGGAWQRGDTSDGSDSSGK*
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mRNA from alignment at L-elsbetiae_contig8141:1616..1927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8141.17139.1 ID=mRNA_L-elsbetiae_contig8141.17139.1|Name=mRNA_L-elsbetiae_contig8141.17139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig8141:1616..1927+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGCACATATGGAGCTCGCGGAGCCGAGCATCGAGGAAGCTTTCGA CCGCTGCGTGGCCGCGGGGGCGCAGAAGGTAGTCCTGCACCCGTTCTTCT TGAGCCCCGGCCGACACGTGACCTCCGACATCCCGGAGCTCATGAACGCG GCCGCGAAGCGACACCCGGAGGTACCCTGGGTCGTGTCGGAGCCGCTGGG CCTCCAGGAGCTCATGCCGCGAGTGATGCACGCCGCCGTGTCCGAGTCGG TCGAGGGCGGAGCGTGGCAGCGCGGTGACACCAGTGATGGCAGCGACAGC AGTGGAAAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8141:1616..1927+

>mRNA_L-elsbetiae_contig8141.17139.1 ID=mRNA_L-elsbetiae_contig8141.17139.1|Name=mRNA_L-elsbetiae_contig8141.17139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig8141:1616..1927+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCTCGCGGAGCCGAGCATCGAGGAAGCTTTCGACCGCTGCGTGGC
CGCGGGGGCGCAGAAGGTAGTCCTGCACCCGTTCTTCTTGAGCCCCGGCC
GACACGTGACCTCCGACATCCCGGAGCTCATGAACGCGGCCGCGAAGCGA
CACCCGGAGGTACCCTGGGTCGTGTCGGAGCCGCTGGGCCTCCAGGAGCT
CATGCCGCGAGTGATGCACGCCGCCGTGTCCGAGTCGGTCGAGGGCGGAG
CGTGGCAGCGCGGTGACACCAGTGATGGCAGCGACAGCAGTGGAAAGTAG
ATGGAGCTCGCGGAGCCGAGCATCGAGGAAGCTTTCGACCGCTGCGTGGC
CGCGGGGGCGCAGAAGGTAGTCCTGCACCCGTTCTTCTTGAGCCCCGGCC
GACACGTGACCTCCGACATCCCGGAGCTCATGAACGCGGCCGCGAAGCGA
CACCCGGAGGTACCCTGGGTCGTGTCGGAGCCGCTGGGCCTCCAGGAGCT
CATGCCGCGAGTGATGCACGCCGCCGTGTCCGAGTCGGTCGAGGGCGGAG
CGTGGCAGCGCGGTGACACCAGTGATGGCAGCGACAGCAGTGGAAAGTAG
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