mRNA_L-elsbetiae_contig814.17136.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig814.17136.1
Unique NamemRNA_L-elsbetiae_contig814.17136.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig814.17136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig814contigL-elsbetiae_contig814:2409..2970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size489
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.2607815-CDS-L-elsbetiae_contig814:2408..28971622816898.2607815-CDS-L-elsbetiae_contig814:2408..2897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig814 2409..2897 +
1691683896.3337514-CDS-L-elsbetiae_contig814:2408..28971691683896.3337514-CDS-L-elsbetiae_contig814:2408..2897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig814 2409..2897 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.271092-UTR-L-elsbetiae_contig814:2897..29701622816898.271092-UTR-L-elsbetiae_contig814:2897..2970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig814 2898..2970 +
1691683896.3454583-UTR-L-elsbetiae_contig814:2897..29701691683896.3454583-UTR-L-elsbetiae_contig814:2897..2970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig814 2898..2970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig814.17136.1prot_L-elsbetiae_contig814.17136.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig814 2409..2897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig814.17136.1

>prot_L-elsbetiae_contig814.17136.1 ID=prot_L-elsbetiae_contig814.17136.1|Name=mRNA_L-elsbetiae_contig814.17136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MFRCGNKIGTRDAPGRAIYIQTKETHKASQEKPPLFTLLHAVATWIKCVQ
PSNVTTANCVCACVCVLWSTSNPLLLQTSSVSDIHTTAVGKLLPEIKHLY
VPHPASRKNRKQLAQAEPYHNQPFRIIDHIMLPWIHVVGGHHENPGLHAK
QSRLNYCIAGHA*
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mRNA from alignment at L-elsbetiae_contig814:2409..2970+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig814.17136.1 ID=mRNA_L-elsbetiae_contig814.17136.1|Name=mRNA_L-elsbetiae_contig814.17136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=562bp|location=Sequence derived from alignment at L-elsbetiae_contig814:2409..2970+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCAGATGTGGAAATAAAATTGGTACGCGCGATGCCCCAGGCAGAGC
AATCTATATACAAACCAAGGAAACACACAAGGCCTCGCAGGAGAAACCCC
CCCTGTTCACGTTACTTCATGCCGTGGCTACGTGGATTAAGTGTGTGCAG
CCATCAAACGTAACGACAGCGAATTGTGTGTGTGCGTGTGTGTGTGTGTT
GTGGAGCACATCAAACCCTCTCTTGCTTCAAACTTCTAGCGTGTCGGACA
TACACACAACTGCGGTTGGAAAGCTCCTCCCCGAGATAAAACATCTGTAT
GTACCCCACCCAGCAAGCAGAAAAAATCGAAAACAGCTTGCCCAGGCTGA
ACCATACCACAATCAGCCCTTCCGCATCATAGACCACATAATGCTGCCGT
GGATACACGTTGTTGGTGGGCATCATGAAAACCCCGGTTTGCATGCAAAA
CAATCACGACTCAACTACTGTATCGCGGGTCATGCGTAATGCCCTGAACG
GTACGATAGGCTTCCAGCAGCAGGGCCCTAAATCTGAAAAAAGTGGCTGT
GGGGGATTTTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig814:2409..2970+

>mRNA_L-elsbetiae_contig814.17136.1 ID=mRNA_L-elsbetiae_contig814.17136.1|Name=mRNA_L-elsbetiae_contig814.17136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig814:2409..2970+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCAGATGTGGAAATAAAATTGGTACGCGCGATGCCCCAGGCAGAGC
AATCTATATACAAACCAAGGAAACACACAAGGCCTCGCAGGAGAAACCCC
CCCTGTTCACGTTACTTCATGCCGTGGCTACGTGGATTAAGTGTGTGCAG
CCATCAAACGTAACGACAGCGAATTGTGTGTGTGCGTGTGTGTGTGTGTT
GTGGAGCACATCAAACCCTCTCTTGCTTCAAACTTCTAGCGTGTCGGACA
TACACACAACTGCGGTTGGAAAGCTCCTCCCCGAGATAAAACATCTGTAT
GTACCCCACCCAGCAAGCAGAAAAAATCGAAAACAGCTTGCCCAGGCTGA
ACCATACCACAATCAGCCCTTCCGCATCATAGACCACATAATGCTGCCGT
GGATACACGTTGTTGGTGGGCATCATGAAAACCCCGGTTTGCATGCAAAA
CAATCACGACTCAACTACTGTATCGCGGGTCATGCGTAAATGTTCAGATG
TGGAAATAAAATTGGTACGCGCGATGCCCCAGGCAGAGCAATCTATATAC
AAACCAAGGAAACACACAAGGCCTCGCAGGAGAAACCCCCCCTGTTCACG
TTACTTCATGCCGTGGCTACGTGGATTAAGTGTGTGCAGCCATCAAACGT
AACGACAGCGAATTGTGTGTGTGCGTGTGTGTGTGTGTTGTGGAGCACAT
CAAACCCTCTCTTGCTTCAAACTTCTAGCGTGTCGGACATACACACAACT
GCGGTTGGAAAGCTCCTCCCCGAGATAAAACATCTGTATGTACCCCACCC
AGCAAGCAGAAAAAATCGAAAACAGCTTGCCCAGGCTGAACCATACCACA
ATCAGCCCTTCCGCATCATAGACCACATAATGCTGCCGTGGATACACGTT
GTTGGTGGGCATCATGAAAACCCCGGTTTGCATGCAAAACAATCACGACT
CAACTACTGTATCGCGGGTCATGCGTAA
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