mRNA_L-elsbetiae_contig814.17135.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig814.17135.1
Unique NamemRNA_L-elsbetiae_contig814.17135.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig814.17135.1 vs. uniprot
Match: D7FHL9_ECTSI (Mitochondrial import inner membrane translocase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL9_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 2.260e-31
Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = 2 
Query:    2 QAAMQVEQQKAQMQAIVSRLSDLAFTKCVQKPSAALSSSEESCINATVFKYFDTSEFVLGRLMKSQQGGG 211
            QAAMQ+EQQKAQMQAIVSRL+DLAFTKC+QKPS++LSSSE+SCINATV KYFDTSEFVLGRLMKSQQGGG
Sbjct:   54 QAAMQIEQQKAQMQAIVSRLTDLAFTKCIQKPSSSLSSSEQSCINATVLKYFDTSEFVLGRLMKSQQGGG 123
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BLAST of mRNA_L-elsbetiae_contig814.17135.1 vs. uniprot
Match: K8YZ78_NANGC (Mitochondrial import inner membrane translocase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZ78_NANGC)

HSP 1 Score: 81.3 bits (199), Expect = 4.560e-15
Identity = 38/65 (58.46%), Postives = 53/65 (81.54%), Query Frame = 2 
Query:   20 EQQKAQMQAIVSRLSDLAFTKCVQKPSAALSSSEESCINATVFKYFDTSEFVLGRLMKSQQGGGG 214
            EQQKA +Q++++RL+++AF  C+ KP+++LSS E+SCI ATV KY DTSEFVLGR+ +S Q G G
Sbjct:   64 EQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQG 128
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BLAST of mRNA_L-elsbetiae_contig814.17135.1 vs. uniprot
Match: W7TJX5_9STRA (Mitochondrial protein translocase family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJX5_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.100e-14
Identity = 38/65 (58.46%), Postives = 53/65 (81.54%), Query Frame = 2 
Query:   20 EQQKAQMQAIVSRLSDLAFTKCVQKPSAALSSSEESCINATVFKYFDTSEFVLGRLMKSQQGGGG 214
            EQQKA +Q++++RL+++AF  C+ KP+++LSS E+SCI ATV KY DTSEFVLGR+ +S Q G G
Sbjct:  100 EQQKALVQSVIARLTEMAFETCITKPASSLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQG 164
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BLAST of mRNA_L-elsbetiae_contig814.17135.1 vs. uniprot
Match: A0A6S9DQ42_HETAK (Mitochondrial import inner membrane translocase subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9DQ42_HETAK)

HSP 1 Score: 79.7 bits (195), Expect = 1.340e-14
Identity = 39/67 (58.21%), Postives = 55/67 (82.09%), Query Frame = 2 
Query:    2 QAAMQVEQQKAQMQAIVSRLSDLAFTKCVQKPSAALSSSEESCINATVFKYFDTSEFVLGRLMKSQQ 202
            Q  +Q EQQ+A +Q +V++L+++A  KCV KPS++LSSSE++CI++ V KY DTSEFVLGR+MK QQ
Sbjct:   57 QELVQQEQQRALIQTVVAKLTEIAHDKCVGKPSSSLSSSEQACIHSVVSKYLDTSEFVLGRMMKQQQ 123
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BLAST of mRNA_L-elsbetiae_contig814.17135.1 vs. uniprot
Match: A0A061S2G3_9CHLO (Mitochondrial import inner membrane translocase subunit n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S2G3_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 4.160e-9
Identity = 30/69 (43.48%), Postives = 52/69 (75.36%), Query Frame = 2 
Query:   11 MQVEQQKAQMQAIVSRLSDLAFTKCVQKPSAALSSSEESCINATVFKYFDTSEFVLGRLM-KSQQGGGG 214
            +Q+EQ+KA++Q +VS+L+++AF KC+  P  ++S+SE++C+  TV ++FD+SEFVL     K++   GG
Sbjct:   16 LQIEQEKAKLQEMVSKLANVAFDKCIGYPGRSMSNSEQNCVANTVARFFDSSEFVLQYFQSKARSSDGG 84
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BLAST of mRNA_L-elsbetiae_contig814.17135.1 vs. uniprot
Match: A0A7R9UGB7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGB7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.240e-9
Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 2 
Query:   20 EQQKAQMQAIVSRLSDLAFTKCVQKPSAALSSSEESCINATVFKYFDTSEFVLGRLMK 193
            E+QKA++QA++  L++LAF +C+ KP ++L S E SCI + V KY DT+EFVL R+ +
Sbjct:   90 ERQKAELQAVIGALTELAFEQCISKPGSSLGSGERSCIESVVGKYLDTNEFVLMRMTR 147
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BLAST of mRNA_L-elsbetiae_contig814.17135.1 vs. uniprot
Match: A0A8J2T0W3_9STRA (Mitochondrial import inner membrane translocase subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0W3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.830e-8
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 2 
Query:    2 QAAMQVEQQKAQMQAIVSRLSDLAFTKCVQK-PSAALSSSEESCINATVFKYFDTSEFVLGRLMKSQQ 202
            Q A+  EQQ+A +Q ++++L++++F  C+QK P + LS+ E +CI+  V KY DTSEFVLGR  K  Q
Sbjct:   65 QRAVVAEQQRALVQQVIAKLTEVSFDTCLQKKPDSTLSAGERACIHTVVGKYLDTSEFVLGRSTKKAQ 132
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BLAST of mRNA_L-elsbetiae_contig814.17135.1 vs. uniprot
Match: A0A7S1UNE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UNE0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.130e-8
Identity = 30/60 (50.00%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:   26 QKAQMQAIVSRLSDLAFTKCVQ-KPSAALSSSEESCINATVFKYFDTSEFVLGRLMKSQQ 202
            Q+  +Q +++ LSD AF +C+  KPS +LS  E +CI+ATV K+ DT+EF++GRL K QQ
Sbjct:   62 QQIMVQTVITDLSDTAFAQCITGKPSDSLSGKESACIHATVNKWMDTNEFMMGRLAKKQQ 121
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BLAST of mRNA_L-elsbetiae_contig814.17135.1 vs. uniprot
Match: A0A7S4M3J4_9EUKA (Mitochondrial import inner membrane translocase subunit n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M3J4_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 7.530e-8
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 2 
Query:    2 QAAMQVEQQKAQMQAIVSRLSDLAFTKCVQKPSAALSSSEESCINATVFKYFDTSEFVLGRLMKSQQGGG 211
            Q+ M+ E QKA +QA +S+L++  F KC+ KP A L ++E +CI     +Y D+S FV+ R+M  +  GG
Sbjct:   30 QSFMETENQKAVIQAAISKLTETCFDKCISKPGAKLDATEANCIANCAGRYLDSSVFVVNRMMAKRGAGG 99
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BLAST of mRNA_L-elsbetiae_contig814.17135.1 vs. uniprot
Match: A0A7J7IIB5_9RHOD (Mitochondrial import inner membrane translocase subunit n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IIB5_9RHOD)

HSP 1 Score: 60.5 bits (145), Expect = 7.940e-8
Identity = 27/60 (45.00%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:   20 EQQKAQMQAIVSRLSDLAFTKCVQKPSAALSSSEESCINATVFKYFDTSEFVLGRLMKSQ 199
            E QKA +QA++++L++L + KCVQKP + LSSSE  C++    ++ DTS F++ R++K Q
Sbjct:   56 ENQKAAVQAVIAKLTELCWDKCVQKPGSKLSSSEAECLSNCAERFLDTSLFIMQRMVKKQ 115
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig814.17135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FHL9_ECTSI2.260e-3190.00Mitochondrial import inner membrane translocase su... [more]
K8YZ78_NANGC4.560e-1558.46Mitochondrial import inner membrane translocase su... [more]
W7TJX5_9STRA1.100e-1458.46Mitochondrial protein translocase family n=1 Tax=N... [more]
A0A6S9DQ42_HETAK1.340e-1458.21Mitochondrial import inner membrane translocase su... [more]
A0A061S2G3_9CHLO4.160e-943.48Mitochondrial import inner membrane translocase su... [more]
A0A7R9UGB7_9STRA4.240e-950.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J2T0W3_9STRA2.830e-847.06Mitochondrial import inner membrane translocase su... [more]
A0A7S1UNE0_9STRA5.130e-850.00Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S4M3J4_9EUKA7.530e-841.43Mitochondrial import inner membrane translocase su... [more]
A0A7J7IIB5_9RHOD7.940e-845.00Mitochondrial import inner membrane translocase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig814contigL-elsbetiae_contig814:908..2023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1e-25
Seed eggNOG ortholog2880.D7FHL9
Preferred nameTIMM8B
KEGG koko:K01209,ko:K17780
KEGG TC3.A.8.1
KEGG ReactionR01762
KEGG Pathwayko00520,map00520
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008324,GO:0008565,GO:0009987,GO:0015031,GO:0015075,GO:0015318,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0034220,GO:0034613,GO:0042719,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046873,GO:0046907,GO:0046914,GO:0050877,GO:0050954,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0061024,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098655,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
EggNOG free text desc.protein transport
EggNOG OGsKOG3489@1,KOG3489@2759
EC3.2.1.55
COG Functional cat.O
CAZyGH51
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Ec32 ortholog descriptionMitochondrial protein import TIM8.13 complex subunit, Tim13 homolog
Ec32 orthologEc-24_004050.1
Exons1
Model size1116
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig814.17135.1prot_L-elsbetiae_contig814.17135.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig814 918..1127 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.2989452-UTR-L-elsbetiae_contig814:907..9171622816898.2989452-UTR-L-elsbetiae_contig814:907..917Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig814 908..917 +
1691683896.3619187-UTR-L-elsbetiae_contig814:907..9171691683896.3619187-UTR-L-elsbetiae_contig814:907..917Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig814 908..917 +
1622816898.3238738-UTR-L-elsbetiae_contig814:1127..20231622816898.3238738-UTR-L-elsbetiae_contig814:1127..2023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig814 1128..2023 +
1691683896.4042118-UTR-L-elsbetiae_contig814:1127..20231691683896.4042118-UTR-L-elsbetiae_contig814:1127..2023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig814 1128..2023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.311164-CDS-L-elsbetiae_contig814:917..11271622816898.311164-CDS-L-elsbetiae_contig814:917..1127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig814 918..1127 +
1691683896.3898187-CDS-L-elsbetiae_contig814:917..11271691683896.3898187-CDS-L-elsbetiae_contig814:917..1127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig814 918..1127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig814.17135.1

>prot_L-elsbetiae_contig814.17135.1 ID=prot_L-elsbetiae_contig814.17135.1|Name=mRNA_L-elsbetiae_contig814.17135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=70bp
MQVEQQKAQMQAIVSRLSDLAFTKCVQKPSAALSSSEESCINATVFKYFD
TSEFVLGRLMKSQQGGGGM*
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mRNA from alignment at L-elsbetiae_contig814:908..2023+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig814.17135.1 ID=mRNA_L-elsbetiae_contig814.17135.1|Name=mRNA_L-elsbetiae_contig814.17135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1116bp|location=Sequence derived from alignment at L-elsbetiae_contig814:908..2023+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGGCGGCGATGCAAGTTGAGCAGCAGAAGGCCCAGATGCAGGCGATCG
TGTCCCGGCTTTCGGACCTAGCCTTCACCAAGTGCGTGCAGAAGCCGTCC
GCGGCACTCTCCAGCTCGGAGGAGAGCTGCATCAACGCCACGGTGTTCAA
GTACTTCGACACCAGCGAGTTTGTCTTGGGGCGGCTGATGAAGTCCCAGC
AGGGAGGGGGCGGAATGTAGTCGGGGGTACATACATAATTGTCTAGCTCG
CGTGCCTTTTATGTAGCTTTTCTCTTTTTTGTCTTCTTTTCAACCTGTTT
TTTTTGGTCTACAACATTGATGAGCTCGGAGAAGTCCAAGCCGGAGCCTT
GCACGGGCTCTCTGTAGCTGCCTCTGCCCAGGGGGGGTACCGCAGTATTG
TCGCGTAGATAGGTACATACCTCGTTCATGGAAGCCGCTCGGCGGCAGCC
TGGTCTGTTGGACAGCAGCGGTGCAAGGCATTCGTTGCTCTCTTATCTGC
TTGTTTAGCGTTTTGTAGCTTTCAGCCTGTGGCTGAAGACCAGCCCTGGT
TGAGTTTGAAGTATTTGCTGCATATGTATGTGCCGGCCATGCGCTGGTTC
AAGGTCAAGTCACCTGTTTTACCACCGTTCTTCTCCCTTTTTGTTCAGCA
TGGATGACTGACTGCTGTGTGAATCCCTCCCTGTGGTTTTTGTTTGTCCA
GTGCTTTGCCGGCGTGCCGCGCGCCGACGGGGTAAGCACACATTTTTTTT
TTCCCTTCCCATTATTGGCGTATTCGTCGTCTGCCCCACTGGGCCCCTTC
ACCACGACCTGGCTAGACGACCTAACCGGGGTTAGCTACACAGGAGGGGG
GGGGGTGGACCCCCTCTCGCGTTGCCTGCCTGCGTGATGGTTTTATCGCG
ATGCTGTACAGCCTTTGCCTCTTGCCTCGAGGCTGGCAGTAAGTCGATTT
CGGGCTGCGGCGAGGGTGCGAATAATCTGAATCCAGCAGGCTCGCGGTGT
ATTGTGATACATACATGCATTCTGTGTGACCATGGTTCAGTACTCTGGCA
AAAGATCAAAGATGCCCTCGTGGCAAGGAGCCCATCATCGAGCACTGGAA
ATAAATGTGAAGAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig814:908..2023+

>mRNA_L-elsbetiae_contig814.17135.1 ID=mRNA_L-elsbetiae_contig814.17135.1|Name=mRNA_L-elsbetiae_contig814.17135.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig814:908..2023+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAGTTGAGCAGCAGAAGGCCCAGATGCAGGCGATCGTGTCCCGGCT
TTCGGACCTAGCCTTCACCAAGTGCGTGCAGAAGCCGTCCGCGGCACTCT
CCAGCTCGGAGGAGAGCTGCATCAACGCCACGGTGTTCAAGTACTTCGAC
ACCAGCGAGTTTGTCTTGGGGCGGCTGATGAAGTCCCAGCAGGGAGGGGG
CGGAATGTAGATGCAAGTTGAGCAGCAGAAGGCCCAGATGCAGGCGATCG
TGTCCCGGCTTTCGGACCTAGCCTTCACCAAGTGCGTGCAGAAGCCGTCC
GCGGCACTCTCCAGCTCGGAGGAGAGCTGCATCAACGCCACGGTGTTCAA
GTACTTCGACACCAGCGAGTTTGTCTTGGGGCGGCTGATGAAGTCCCAGC
AGGGAGGGGGCGGAATGTAG
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